mRNA_L-elsbetiae_contig14711.3423.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14711.3423.1
Unique NamemRNA_L-elsbetiae_contig14711.3423.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14711.3423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14711contigL-elsbetiae_contig14711:1954..2892 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size940
Cds size870
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.9197013-UTR-L-elsbetiae_contig14711:1953..20221622815591.9197013-UTR-L-elsbetiae_contig14711:1953..2022Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14711 1954..2022 +
1691682978.484892-UTR-L-elsbetiae_contig14711:1953..20221691682978.484892-UTR-L-elsbetiae_contig14711:1953..2022Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14711 1954..2022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.9333236-CDS-L-elsbetiae_contig14711:2022..28921622815591.9333236-CDS-L-elsbetiae_contig14711:2022..2892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14711 2023..2892 +
1691682978.497372-CDS-L-elsbetiae_contig14711:2022..28921691682978.497372-CDS-L-elsbetiae_contig14711:2022..2892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14711 2023..2892 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14711.3423.1prot_L-elsbetiae_contig14711.3423.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14711 2023..2892 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14711.3423.1

>prot_L-elsbetiae_contig14711.3423.1 ID=prot_L-elsbetiae_contig14711.3423.1|Name=mRNA_L-elsbetiae_contig14711.3423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=290bp
MAPQAGRVEVKQRVDVKPWTGKTAKDGSIFTDFMIFQSSVLAWLQNEGLG
DVLDYPEIRVGEKRVDMGSLYDTYGDERVEKSLKVWHFLIRNVQDPVMLH
LMIACASPHIAWGVLINHYYSERKNEERERIESEWLTLKQGETEKALTYL
ARAEALRWSLAMFNVQYTEKMANRHVAGGLNDSYAAAKSSLAIAPDLTRK
NLEEVLRLPENERTRTERGGSMETGHAFAAVAVERSDGGARALAVAREGA
GRGAGYGNYFCVLHGQNPSHNTMGCCKLGRDFEDFLAGKR
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mRNA from alignment at L-elsbetiae_contig14711:1954..2892+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14711.3423.1 ID=mRNA_L-elsbetiae_contig14711.3423.1|Name=mRNA_L-elsbetiae_contig14711.3423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=939bp|location=Sequence derived from alignment at L-elsbetiae_contig14711:1954..2892+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGTGCAGCCGCTCAAACTAGGAGTTATGAGGGGGATCTGATCAACCTT
CACAGCGGCTATAGCGGGGATGGCTCCCCAAGCAGGCAGAGTGGAAGTGA
AGCAGCGAGTAGATGTGAAGCCTTGGACCGGTAAGACTGCGAAGGATGGT
AGCATTTTTACTGATTTCATGATTTTCCAATCTTCGGTCCTCGCTTGGTT
GCAGAACGAAGGTCTGGGGGATGTTTTGGATTATCCAGAGATTCGCGTCG
GAGAAAAGAGGGTAGACATGGGAAGCCTGTATGACACGTACGGAGATGAG
AGAGTAGAGAAGTCTTTGAAGGTGTGGCATTTTCTGATTAGAAATGTGCA
GGATCCCGTGATGCTTCACCTGATGATAGCATGTGCCTCGCCGCATATTG
CATGGGGTGTACTTATAAATCACTATTATTCTGAAAGGAAGAACGAAGAG
AGAGAAAGGATCGAGTCAGAATGGCTAACTTTGAAGCAGGGAGAGACGGA
GAAAGCGTTGACGTACTTGGCTAGAGCAGAAGCGTTGCGGTGGAGCCTTG
CGATGTTTAACGTTCAGTATACTGAGAAGATGGCAAACCGCCACGTTGCT
GGGGGTTTAAATGACTCATATGCTGCTGCGAAATCCTCCCTTGCCATTGC
CCCTGACTTGACGAGAAAAAACCTCGAAGAGGTGCTTAGGTTGCCCGAGA
ACGAGCGCACCCGTACCGAAAGGGGAGGGAGCATGGAGACGGGCCACGCG
TTCGCTGCCGTTGCAGTGGAGAGGAGCGACGGCGGGGCACGGGCACTTGC
TGTGGCACGAGAGGGAGCTGGGAGGGGAGCTGGGTACGGCAACTACTTCT
GCGTCCTGCATGGGCAGAACCCATCTCATAACACCATGGGATGCTGCAAG
CTCGGACGCGACTTCGAGGACTTCCTGGCCGGAAAAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14711:1954..2892+

>mRNA_L-elsbetiae_contig14711.3423.1 ID=mRNA_L-elsbetiae_contig14711.3423.1|Name=mRNA_L-elsbetiae_contig14711.3423.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1740bp|location=Sequence derived from alignment at L-elsbetiae_contig14711:1954..2892+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTCCCCAAGCAGGCAGAGTGGAAGTGAAGCAGCGAGTAGATGTGAA
GCCTTGGACCGGTAAGACTGCGAAGGATGGTAGCATTTTTACTGATTTCA
TGATTTTCCAATCTTCGGTCCTCGCTTGGTTGCAGAACGAAGGTCTGGGG
GATGTTTTGGATTATCCAGAGATTCGCGTCGGAGAAAAGAGGGTAGACAT
GGGAAGCCTGTATGACACGTACGGAGATGAGAGAGTAGAGAAGTCTTTGA
AGGTGTGGCATTTTCTGATTAGAAATGTGCAGGATCCCGTGATGCTTCAC
CTGATGATAGCATGTGCCTCGCCGCATATTGCATGGGGTGTACTTATAAA
TCACTATTATTCTGAAAGGAAGAACGAAGAGAGAGAAAGGATCGAGTCAG
AATGGCTAACTTTGAAGCAGGGAGAGACGGAGAAAGCGTTGACGTACTTG
GCTAGAGCAGAAGCGTTGCGGTGGAGCCTTGCGATGTTTAACGTTCAGTA
TACTGAGAAGATGGCAAACCGCCACGTTGCTGGGGGTTTAAATGACTCAT
ATGCTGCTGCGAAATCCTCCCTTGCCATTGCCCCTGACTTGACGAGAAAA
AACCTCGAAGAGGTGCTTAGGTTGCCCGAGAACGAGCGCACCCGTACCGA
AAGGGGAGGGAGCATGGAGACGGGCCACGCGTTCGCTGCCGTTGCAGTGG
AGAGGAGCGACGGCGGGGCACGGGCACTTGCTGTGGCACGAGAGGGAGCT
GGGAGGGGAGCTGGGTACGGCAACTACTTCTGCGTCCTGCATGGGCAGAA
CCCATCTCATAACACCATGGGATGCTGCAAGCTCGGACGCGACTTCGAGG
ACTTCCTGGCCGGAAAAAGGATGGCTCCCCAAGCAGGCAGAGTGGAAGTG
AAGCAGCGAGTAGATGTGAAGCCTTGGACCGGTAAGACTGCGAAGGATGG
TAGCATTTTTACTGATTTCATGATTTTCCAATCTTCGGTCCTCGCTTGGT
TGCAGAACGAAGGTCTGGGGGATGTTTTGGATTATCCAGAGATTCGCGTC
GGAGAAAAGAGGGTAGACATGGGAAGCCTGTATGACACGTACGGAGATGA
GAGAGTAGAGAAGTCTTTGAAGGTGTGGCATTTTCTGATTAGAAATGTGC
AGGATCCCGTGATGCTTCACCTGATGATAGCATGTGCCTCGCCGCATATT
GCATGGGGTGTACTTATAAATCACTATTATTCTGAAAGGAAGAACGAAGA
GAGAGAAAGGATCGAGTCAGAATGGCTAACTTTGAAGCAGGGAGAGACGG
AGAAAGCGTTGACGTACTTGGCTAGAGCAGAAGCGTTGCGGTGGAGCCTT
GCGATGTTTAACGTTCAGTATACTGAGAAGATGGCAAACCGCCACGTTGC
TGGGGGTTTAAATGACTCATATGCTGCTGCGAAATCCTCCCTTGCCATTG
CCCCTGACTTGACGAGAAAAAACCTCGAAGAGGTGCTTAGGTTGCCCGAG
AACGAGCGCACCCGTACCGAAAGGGGAGGGAGCATGGAGACGGGCCACGC
GTTCGCTGCCGTTGCAGTGGAGAGGAGCGACGGCGGGGCACGGGCACTTG
CTGTGGCACGAGAGGGAGCTGGGAGGGGAGCTGGGTACGGCAACTACTTC
TGCGTCCTGCATGGGCAGAACCCATCTCATAACACCATGGGATGCTGCAA
GCTCGGACGCGACTTCGAGGACTTCCTGGCCGGAAAAAGG
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