mRNA_L-elsbetiae_contig1471.3422.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1471.3422.1
Unique NamemRNA_L-elsbetiae_contig1471.3422.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1471.3422.1 vs. uniprot
Match: D8LHB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB6_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 8.270e-32
Identity = 76/188 (40.43%), Postives = 110/188 (58.51%), Query Frame = 1 
Query:   67 LKVGERLTGVLLSDDTTSMFFVNPMDASVVFRH---KPPQGDSGTNGGKIPDW-GTLIHSSPRELAKVDRIRREVVEED--KKMLFRGGEEKKRGARETVLGWLPWGKTGRRQRRAREQAREHWGEVYLTMTDRGVLEGHMFGRRVLKCGGPSFFGWRKKRDDYQAWATTEGLGLKRDGAYYWGIKIQ 612
            LKVGE LTG L+S    S  F +  D ++VF     +PP+   G   G  P+   TL+ S P ++AK   IR E++ E+  ++     G+  KRGA  T+ GW+P+GK G  +RRARE A+ H GEV L +T+RG LEG + G RV +  GPS+FG+R K   Y+ W +  G+ + R+G   W I+ +
Sbjct:  142 LKVGEVLTGTLMSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETITTLVASDPGKVAKRSAIRAELLAEELHERTAQAEGKSGKRGALATIAGWMPFGKGGFLRRRAREHAKVHMGEVNLYVTNRGHLEGSVDGTRVARKSGPSWFGYRTKDPSYELWVSHSGVEITRNGMLDWSIEAE 329
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1471.3422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHB6_ECTSI8.270e-3240.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1471contigL-elsbetiae_contig1471:8610..10582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size982
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1471.3422.1prot_L-elsbetiae_contig1471.3422.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1471 8974..10519 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.8539333-UTR-L-elsbetiae_contig1471:8609..89731622815591.8539333-UTR-L-elsbetiae_contig1471:8609..8973Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1471 8610..8973 -
1691682978.4403512-UTR-L-elsbetiae_contig1471:8609..89731691682978.4403512-UTR-L-elsbetiae_contig1471:8609..8973Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1471 8610..8973 -
1622815591.8857734-UTR-L-elsbetiae_contig1471:10519..105821622815591.8857734-UTR-L-elsbetiae_contig1471:10519..10582Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1471 10520..10582 -
1691682978.4727337-UTR-L-elsbetiae_contig1471:10519..105821691682978.4727337-UTR-L-elsbetiae_contig1471:10519..10582Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1471 10520..10582 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.8649936-CDS-L-elsbetiae_contig1471:8973..91321622815591.8649936-CDS-L-elsbetiae_contig1471:8973..9132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1471 8974..9132 -
1691682978.4521987-CDS-L-elsbetiae_contig1471:8973..91321691682978.4521987-CDS-L-elsbetiae_contig1471:8973..9132Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1471 8974..9132 -
1622815591.8752377-CDS-L-elsbetiae_contig1471:10123..105191622815591.8752377-CDS-L-elsbetiae_contig1471:10123..10519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1471 10124..10519 -
1691682978.4624014-CDS-L-elsbetiae_contig1471:10123..105191691682978.4624014-CDS-L-elsbetiae_contig1471:10123..10519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1471 10124..10519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1471.3422.1

>prot_L-elsbetiae_contig1471.3422.1 ID=prot_L-elsbetiae_contig1471.3422.1|Name=mRNA_L-elsbetiae_contig1471.3422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
MLKVGERLTGVLLSDDTTSMFFVNPMDASVVFRHKPPQGDSGTNGGKIPD
WGTLIHSSPRELAKVDRIRREVVEEDKKMLFRGGEEKKRGARETVLGWLP
WGKTGRRQRRAREQAREHWGEVYLTMTDRGVLEGHMFGRRVLKCGGPSFF
GWRKKRDDYQAWATTEGLGLKRDGAYYWGIKIQT*
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mRNA from alignment at L-elsbetiae_contig1471:8610..10582-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1471.3422.1 ID=mRNA_L-elsbetiae_contig1471.3422.1|Name=mRNA_L-elsbetiae_contig1471.3422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1973bp|location=Sequence derived from alignment at L-elsbetiae_contig1471:8610..10582- (Laminarionema elsbetiae ELsaHSoW15)
AGCCTCGGCCGTGACTACTACCAGTTTCCACCTCCGGAGGGGCTGTTTCA
TTCCGAGGAACCAATGCTGAAAGTCGGGGAGAGGCTCACTGGCGTGCTCC
TGAGTGATGATACGACATCTATGTTTTTCGTGAACCCCATGGATGCTTCA
GTGGTATTCCGCCATAAGCCGCCCCAGGGAGACAGCGGTACCAACGGCGG
AAAGATACCTGATTGGGGAACGCTCATCCACTCGAGCCCCCGGGAGTTGG
CGAAAGTCGACCGCATTCGGCGAGAGGTCGTCGAGGAGGACAAGAAGATG
CTTTTCAGAGGCGGAGAGGAGAAGAAGAGAGGAGCACGAGAGACGGTCTT
GGGCTGGTTACCCTGGGGCAAGACCGGAAGGCGGCAGAGAAGAGCGAGGG
AACAAGCGAGGGAGCATTGGGGAGAGGTGTACCTCACGATGACGGACCGC
GGCGTGCTGGTAAGCATTTCTTTTCCCCCGCTTGTCGTGGTTGTGTATAA
AGAAGGCTAAAACAAACAGCAGTATTAGATGCGCCGATCGGCAGAAATAA
GACAGGGTGTAACATAGGGTTAAGGATGGACAACGTAGTTGAAGTTGCGG
GGAGTAGACTGCTGGTTCTGATTTATTCCTCCTTGAAACCAGTACAATAA
GAACACATGTTTGGCACCGCAATTTTTATGGGTGTCGGGATCCGTTGGAC
TGTCTTGAGCACCATTTTCTTGAAGGGTAACATCCTGGCCATCTTCACGT
GTCTGCTGTTTGAGCTGGGTTCGCAAGGCGTGTGTGCCTTTGTTGTTCAG
CAAAGCCCGACCAGATTGACGGAAAAGTGGACGTTTTGAGACGGTTTGAA
AACACAAAGTTCTCCAGATCGAAAGCTCTTGGGCACCGCTCCGGCTGTGC
TCTGACTTTGTTCCTCCAAGGTTTTTAGAAGGGGTGCTCAGCCGAAGACC
ATGTATCCAAAGACCTCGAGCGCTCCATGGCCGACCCTCGTTGCTGTCTA
CCCCAGTGTGCATGCCCTCACTTTTGCGGACACACAAAAATGTAGTTTGC
TCGGTGCAGACTAGGAAACGAACGGTCGACCGTGGTGCATATTGCTCTCT
GCTCTGCTACCAAGGAAGAGCTACCTCACGATAGTCAACCCCAAGGAAGT
TGGTGTCAGTTCTCACGTCAAAGCGCAGAAATCGATTTTGCGGTGAGAGA
GGGCAGCTGGAGAGAGATCTACCGCATTTTCTGTGGGAGATGGCAGAAAA
GAACCGCTATCAAAAAAATACGTGTCGCTTCGGGCTCTCTCCTGGAATCT
CTACCCGGAAGATTTCAAAGCTGTGCTGCGTGGTCCATCCTTAACACGCA
ATTGCTCGACCCCGGCCAAGTCGTTGTGAATTAAAAACTAAAATATGATA
CCTCAAAACTAACAATACCCCATCGCCTACTTGCTGTCCCAACATCACAG
GAGGGGCACATGTTTGGCCGGAGGGTGCTCAAATGTGGAGGGCCATCGTT
TTTCGGTTGGAGAAAGAAGAGAGATGATTACCAGGCTTGGGCCACCACCG
AGGGTCTAGGGTTGAAGCGAGATGGGGCCTACTACTGGGGGATCAAGATC
CAAACGTGATGCGCTGTGCGTGATGCGTGTAGATTTCTTTAGTTGTTATT
GTTTCCCGTTGGGGAGTAGGAGAGAGTAGGAGAGTCAGGAGCGGGGGTCA
GGAGGATAAGTCAGGAGGAAATGGCGAGAGAAGGACAAGTCGATGGCATG
CAAGCTTGTCGGGTTTGTATTTGCGTGTTTCGCGCCGCTTTTTGTTATGA
ATGGAGAGGAGATGCTTTGTAGGCGTGTAGGCTGCCCGGCAGCTTTGGAA
ATGGGGGCGAAGGTGGCGTGAGTTGCTGTGCGTGTGTGCGCTCTTTGGTG
ATTGAGAGAGAAAAAGCGGCTGTTGAGTGTTCGTTTGCGTGTTCCGCTAC
GTTTATACTTCTACACAGTCTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1471:8610..10582-

>mRNA_L-elsbetiae_contig1471.3422.1 ID=mRNA_L-elsbetiae_contig1471.3422.1|Name=mRNA_L-elsbetiae_contig1471.3422.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig1471:8610..10582- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGAAAGTCGGGGAGAGGCTCACTGGCGTGCTCCTGAGTGATGATAC
GACATCTATGTTTTTCGTGAACCCCATGGATGCTTCAGTGGTATTCCGCC
ATAAGCCGCCCCAGGGAGACAGCGGTACCAACGGCGGAAAGATACCTGAT
TGGGGAACGCTCATCCACTCGAGCCCCCGGGAGTTGGCGAAAGTCGACCG
CATTCGGCGAGAGGTCGTCGAGGAGGACAAGAAGATGCTTTTCAGAGGCG
GAGAGGAGAAGAAGAGAGGAGCACGAGAGACGGTCTTGGGCTGGTTACCC
TGGGGCAAGACCGGAAGGCGGCAGAGAAGAGCGAGGGAACAAGCGAGGGA
GCATTGGGGAGAGGTGTACCTCACGATGACGGACCGCGGCGTGCTGATGC
TGAAAGTCGGGGAGAGGCTCACTGGCGTGCTCCTGAGTGATGATACGACA
TCTATGTTTTTCGTGAACCCCATGGATGCTTCAGTGGTATTCCGCCATAA
GCCGCCCCAGGGAGACAGCGGTACCAACGGCGGAAAGATACCTGATTGGG
GAACGCTCATCCACTCGAGCCCCCGGGAGTTGGCGAAAGTCGACCGCATT
CGGCGAGAGGTCGTCGAGGAGGACAAGAAGATGCTTTTCAGAGGCGGAGA
GGAGAAGAAGAGAGGAGCACGAGAGACGGTCTTGGGCTGGTTACCCTGGG
GCAAGACCGGAAGGCGGCAGAGAAGAGCGAGGGAACAAGCGAGGGAGCAT
TGGGGAGAGGTGTACCTCACGATGACGGACCGCGGCGTGCTGGAGGGGCA
CATGTTTGGCCGGAGGGTGCTCAAATGTGGAGGGCCATCGTTTTTCGGTT
GGAGAAAGAAGAGAGATGATTACCAGGCTTGGGCCACCACCGAGGGTCTA
GGGTTGAAGCGAGATGGGGCCTACTACTGGGGGATCAAGATCCAAACGTG
AGAGGGGCACATGTTTGGCCGGAGGGTGCTCAAATGTGGAGGGCCATCGT
TTTTCGGTTGGAGAAAGAAGAGAGATGATTACCAGGCTTGGGCCACCACC
GAGGGTCTAGGGTTGAAGCGAGATGGGGCCTACTACTGGGGGATCAAGAT
CCAAACGTGA
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