mRNA_L-elsbetiae_contig147.3412.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig147.3412.1
Unique NamemRNA_L-elsbetiae_contig147.3412.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig147.3412.1 vs. uniprot
Match: A0A6H5L022_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L022_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 4.090e-42
Identity = 89/124 (71.77%), Postives = 105/124 (84.68%), Query Frame = 1 
Query:  133 RGASRGADTGL-RLGMMFGRGRAPPPQLSEEELAGMAKSREEANLKVKEFLEKRRAEKEDRKNAQLAQQRDKVANRIKAEKEDAEHKKVYIPRRLEEIEEEEARLQDRMSAFNSKIKDKEIKEL 501
            RG SR A T L RLGMMFGRGR PPP LSEE+LA MAKSREEAN K++ FLEKRRA+++ RK A+ A  R+KVANR+KAEKE+AEH KVYIP+RLEEIE E+A L+DRMSAFN+KIKDK+I +L
Sbjct:   54 RGQSRDATTVLTRLGMMFGRGRNPPPTLSEEDLATMAKSREEANQKIENFLEKRRADRKARKEAEQAXXREKVANRMKAEKEEAEHSKVYIPQRLEEIEREQAVLKDRMSAFNTKIKDKDIGDL 177
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BLAST of mRNA_L-elsbetiae_contig147.3412.1 vs. uniprot
Match: D7FRI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRI6_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 9.560e-30
Identity = 65/89 (73.03%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:  235 MAKSREEANLKVKEFLEKRRAEKEDRKNAQLAQQRDKVANRIKAEKEDAEHKKVYIPRRLEEIEEEEARLQDRMSAFNSKIKDKEIKEL 501
            MAKSREEAN K+  FLEKRRAE+E RK A+ A+QR+KVANR+KA+KE+AEH KVYIP+RLEEIE E+A L+DRMSAFN+KIKDK+I++L
Sbjct:    1 MAKSREEANHKIDNFLEKRRAEREARKEAEQAEQREKVANRMKAKKEEAEHNKVYIPQRLEEIEREQAVLKDRMSAFNTKIKDKDIEDL 89
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig147.3412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L022_9PHAE4.090e-4271.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRI6_ECTSI9.560e-3073.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig147contigL-elsbetiae_contig147:3101..5798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_000100.1
Exons3
Model size977
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig147.3412.1prot_L-elsbetiae_contig147.3412.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig147 3574..5624 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.0457668-UTR-L-elsbetiae_contig147:3100..35731622815591.0457668-UTR-L-elsbetiae_contig147:3100..3573Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig147 3101..3573 -
1691682977.9499986-UTR-L-elsbetiae_contig147:3100..35731691682977.9499986-UTR-L-elsbetiae_contig147:3100..3573Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig147 3101..3573 -
1622815591.0912263-UTR-L-elsbetiae_contig147:5624..57981622815591.0912263-UTR-L-elsbetiae_contig147:5624..5798Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig147 5625..5798 -
1691682978.0045228-UTR-L-elsbetiae_contig147:5624..57981691682978.0045228-UTR-L-elsbetiae_contig147:5624..5798Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig147 5625..5798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.057743-CDS-L-elsbetiae_contig147:3573..36991622815591.057743-CDS-L-elsbetiae_contig147:3573..3699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig147 3574..3699 -
1691682977.960386-CDS-L-elsbetiae_contig147:3573..36991691682977.960386-CDS-L-elsbetiae_contig147:3573..3699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig147 3574..3699 -
1622815591.0686383-CDS-L-elsbetiae_contig147:4383..45061622815591.0686383-CDS-L-elsbetiae_contig147:4383..4506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig147 4384..4506 -
1691682977.976058-CDS-L-elsbetiae_contig147:4383..45061691682977.976058-CDS-L-elsbetiae_contig147:4383..4506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig147 4384..4506 -
1622815591.0802088-CDS-L-elsbetiae_contig147:5543..56241622815591.0802088-CDS-L-elsbetiae_contig147:5543..5624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig147 5544..5624 -
1691682977.990612-CDS-L-elsbetiae_contig147:5543..56241691682977.990612-CDS-L-elsbetiae_contig147:5543..5624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig147 5544..5624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig147.3412.1

>prot_L-elsbetiae_contig147.3412.1 ID=prot_L-elsbetiae_contig147.3412.1|Name=mRNA_L-elsbetiae_contig147.3412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MMFGRGRAPPPQLSEEELAGMAKSREEANLKVKEFLEKRRAEKEDRKNAQ
LAQQRDKVANRIKAEKEDAEHKKVYIPRRLEEIEEEEARLQDRMSAFNSK
IKDKEIKEL*
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mRNA from alignment at L-elsbetiae_contig147:3101..5798-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig147.3412.1 ID=mRNA_L-elsbetiae_contig147.3412.1|Name=mRNA_L-elsbetiae_contig147.3412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2698bp|location=Sequence derived from alignment at L-elsbetiae_contig147:3101..5798- (Laminarionema elsbetiae ELsaHSoW15)
TTGGTATGTATTGCACTGCAGGCTTTCGTGCCTTCGCCGGGCTCTCTGCC
CAGTGCACGCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGGAGGAGGGAGGAGATGGCAAGGGGGCAGGGGGGCGTCGCGAGGC
GCAGACACGGGGTTGAGGCTAGGCATGATGTTCGGTCGCGGTCGGGCACC
ACCGCCGCAGCTTAGCGAGGAGGAGCTGGCCGGCATGGCCAAGTCCAGAG
AAGAGGTGCGTTGTGGTTGTGTGTTTGTCGCAGCAAGGAAGTACAAGTTG
TTTGGTATGGCCGCCTCCCCGACAAAACGACGACAGCAGCAATTCGGATG
CTGCTGCTGTTCTACACACATAGGTGCTGCCATCATTTTCCTCCCGACTG
TGTCCACAAACAGCAGTAGTACATCGTACAGGCATAATACATACGCGGCG
AGTGCTTTCGAAGCGAACAAAGTGTGAACAACGATTCCCCCGCTTGCATG
GTCTCTGCTTTACTCTCGCCCCCGGGAAGTTCTACTCTGCTCCTGCCTTT
TCGGGGGTACTACTGTATGTGTATATCTGTTCATGTGGCCAATAGTATAG
GCGAGCTTCCACGGGCAAGGCGCGGGTGATTGGCTTTATAGCCTTCAAAC
AAGGCGCTGCAAAGTTGTACGCACATGTCATTCAGCAGTGCTCTTTGGCA
ACTTGCTTGTTTTCGACGAGCCGATCACGTTCGAACTTGGCTCCAGTTGC
TCTCCAGAATCGGCCTATTATTTTCAAGAAGTGTTGTACAAATGTCAGCA
TGTGGTGAGAACCATCGGTCCAAGGGGACTACCTATTGTGGACAAACCCT
CCCTCACCGCCTCCGACATACAGGCAGTGGCATCTGTGTGTGTGTGTGTG
TGTGTGTTGTCTTCACATTAAAAACCGTTCCGATCTCTCTTTCCAGTACA
CCTCCATGAGTCCGTACTAATCCAGCACTGACGCGGTCGATTCCATTCCC
GTGGTCACAGGATAACTTAAACCCTATAAAAGGGTATAGACTACTAAAAA
ATAAAAGTAAATAGAAACGGACCCGTGGGGCGCACAAAGCACAAAACAAT
GTCCAACTTCTTTTTTGTTGTTTTCTGTTTGTCCGGTGATGGCCGAGGAG
CGTCACCTCAAACTGTCTGCTCGCTTGTCTGCTAACGTATGTATCTCTGC
TTGTGTCGCGATCTTTTGCGACCGGAACGGCTCCAACGTACAAGTACATA
TGTATGGTGTCTCGTCCCACTGGTATCTTGTGCGTTTGACAGGCCAATTT
GAAGGTGAAGGAATTTTTGGAGAAACGGAGGGCGGAAAAGGAGGACAGAA
AAAACGCCCAACTGGCCCAGCAAAGAGACAAGGTGGCCAACCGCATCAAG
GCCGAGAAGGAAGATGTAAGCCTGCCCCCCCCCCCCCCCCCCCCCCGGGC
AGGGGCGTTTCAGTGAACACAGAAAATTTTGTTTTCCTCCTTTATGCCCT
GTTTGTTTTNNNNNNNNNNGGAAGATGTAAGCCCGCCCCCCCCCCCCCCC
ATCTCGCGTGCTCGGAGTATTCAGCAGAAGCAGATAATTTTCATCTCCTC
CTGTGTGACCCCGGTTGGTTCTAGCTGTACAGACAAATGCACTGCAAAGT
GTAGTACCTCTAAGTACACCGCAAGGTGTAGTACACGTGTCCACTTGGGG
GGACTGTCGCCAAAATAAATGGGAAGGACACACACACACAGACACACACA
CAGAGACAAGGTGACTGGGTGCAGTCTGCTCAAAGACGAATTGCGTTGCG
AGGAAACAGCACTTCTGAGACAATGAAAGATTCCCTCGAAGATACAGATA
AATAGTATGAATAGTCGATGTTACGTACCTGACATCGGTACTAGCACCGC
ACGTGAAGGTTCCTCGAATAGAGCGCCACTCAAAAAGCTGTTTGTAGGCG
AAGGTCAGTCCCACCCGTATTTCGGTCTTGAACCTAGGTACTTACTAGCT
AGGTTGAACGCGTGTACGCACATCTCCTGCGTATGTGCCTACTTATTGTG
CTGGTTATCCTGTGCTGTTTTGGTTTCATGCTGTTTTGGTTTCCATCAGG
CCGAGCACAAGAAGGTGTACATCCCGCGACGTCTGGAGGAGATCGAAGAG
GAGGAGGCCAGGCTGCAAGACAGAATGTCCGCTTTCAACTCCAAGATCAA
GGACAAAGAGATCAAGGAGCTGTAGATCATGTAGATGGCGCCCTCTGTGG
CAGGCAAAAGCGCCACCTAAAGAAGAAGGAGATTGAAACTAAATGCTCAT
TCCTCATACATAGTCTAGATACGTACCATATGTTGGTCTCGTTTCCCCCG
CGACCGACTCGATCCGGTTGCTCGCAGTTTTGTTGCGGTGTCGGAATCGC
GATGTTGATGTCAAATCCCTCCGTTCTTCCTTTTTCGGAGAAGGTCGCTG
ATACCCCACTCCGTCCGTGTCCACGTTTCGCTTCCTTTTTTGGCGTCCAA
AAACTTGAGGCAGACATGCTCCACTGGCATGCGAGAGGTCTGAGGTGTGG
GGGTGTGGGTTAGAGTAGGATGGGGCAAAGCCTGCCGGCTACGTGAGGGC
GGCAAAATCGCACCCGAAGCCACCGTGCTGTTTGTTTCAAGCAGACCGGT
TCATGTGCTCCCAACTGATGTAGTCGAACAATGTTAAGGAGGGTGTAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig147:3101..5798-

>mRNA_L-elsbetiae_contig147.3412.1 ID=mRNA_L-elsbetiae_contig147.3412.1|Name=mRNA_L-elsbetiae_contig147.3412.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig147:3101..5798- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGTTCGGTCGCGGTCGGGCACCACCGCCGCAGCTTAGCGAGGAGGA
GCTGGCCGGCATGGCCAAGTCCAGAGAAGAGATGATGTTCGGTCGCGGTC
GGGCACCACCGCCGCAGCTTAGCGAGGAGGAGCTGGCCGGCATGGCCAAG
TCCAGAGAAGAGGCCAATTTGAAGGTGAAGGAATTTTTGGAGAAACGGAG
GGCGGAAAAGGAGGACAGAAAAAACGCCCAACTGGCCCAGCAAAGAGACA
AGGTGGCCAACCGCATCAAGGCCGAGAAGGAAGATGCCAATTTGAAGGTG
AAGGAATTTTTGGAGAAACGGAGGGCGGAAAAGGAGGACAGAAAAAACGC
CCAACTGGCCCAGCAAAGAGACAAGGTGGCCAACCGCATCAAGGCCGAGA
AGGAAGATGCCGAGCACAAGAAGGTGTACATCCCGCGACGTCTGGAGGAG
ATCGAAGAGGAGGAGGCCAGGCTGCAAGACAGAATGTCCGCTTTCAACTC
CAAGATCAAGGACAAAGAGATCAAGGAGCTGTAGGCCGAGCACAAGAAGG
TGTACATCCCGCGACGTCTGGAGGAGATCGAAGAGGAGGAGGCCAGGCTG
CAAGACAGAATGTCCGCTTTCAACTCCAAGATCAAGGACAAAGAGATCAA
GGAGCTGTAG
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