mRNA_L-elsbetiae_contig147.3415.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig147.3415.1
Unique NamemRNA_L-elsbetiae_contig147.3415.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig147.3415.1 vs. uniprot
Match: A0A6H5KKA9_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKA9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.520e-14
Identity = 51/107 (47.66%), Postives = 66/107 (61.68%), Query Frame = -2 
Query:  162 GEPGAAAAMERVSSSCMVSDLFAVKTEADVDAM---------------------EQDDDGDDSEIKIEEYEPTDPVFGFMVDDIMSNNFSVVSNRDVEGMSAGVAVS 419
            G+      M+RVSSSC VS +FAVKTEAD+D                       E+D + DD+ I  E+YEPTDPVFGFM+DDI+S+NF+VV +RD    +AGVAV+
Sbjct:  465 GDEEGRGTMKRVSSSCKVSAMFAVKTEADIDMPDHQDHQAPDLIEPQQLVVEEEEEDYEHDDAFIDAEDYEPTDPVFGFMIDDILSSNFNVVPSRD-SSSAAGVAVN 570
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig147.3415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKA9_9PHAE2.520e-1447.66CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig147contigL-elsbetiae_contig147:30045..30641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size598
Cds size414
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.9260085-UTR-L-elsbetiae_contig147:30044..302271622815590.9260085-UTR-L-elsbetiae_contig147:30044..30227Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig147 30045..30227 +
1691682977.886635-UTR-L-elsbetiae_contig147:30044..302271691682977.886635-UTR-L-elsbetiae_contig147:30044..30227Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig147 30045..30227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.9402328-CDS-L-elsbetiae_contig147:30227..306411622815590.9402328-CDS-L-elsbetiae_contig147:30227..30641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig147 30228..30641 +
1691682977.897351-CDS-L-elsbetiae_contig147:30227..306411691682977.897351-CDS-L-elsbetiae_contig147:30227..30641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig147 30228..30641 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig147.3415.1prot_L-elsbetiae_contig147.3415.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig147 30228..30641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig147.3415.1

>prot_L-elsbetiae_contig147.3415.1 ID=prot_L-elsbetiae_contig147.3415.1|Name=mRNA_L-elsbetiae_contig147.3415.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MPSTSLFETTLKLFDMMSSTMNPNTGSVGSYSSILISESSPSSSCSIAST
SASVFTAKRSDTIQLLLTLSIAAAAPGSPPGETDILSLSSDAALVLLPPS
SRSSSSSSATTSSAAATFSLAALAAAAAAFSQSDFGGD
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mRNA from alignment at L-elsbetiae_contig147:30045..30641+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig147.3415.1 ID=mRNA_L-elsbetiae_contig147.3415.1|Name=mRNA_L-elsbetiae_contig147.3415.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=597bp|location=Sequence derived from alignment at L-elsbetiae_contig147:30045..30641+ (Laminarionema elsbetiae ELsaHSoW15)
GCGTGACTTTCGATTTCATGCTGCAGATAAATTAAACCACATCAGACCAG
CGCCCCACAACAAGATAACACAACTACCGTTTCCTATGCCCGATCTATTC
CCTCTTCGCAACCTAAAACACTCGCGCTCCTCGCCCCCCCCGCCGCTGGC
CACGCCACTCAACTAACCGCAACTCCCGCTGACATGCCTTCCACGTCTCT
GTTCGAGACGACACTAAAGTTGTTCGACATGATGTCGTCGACCATGAACC
CGAACACGGGGTCGGTTGGCTCGTACTCCTCGATCTTGATCTCCGAGTCG
TCGCCGTCATCGTCTTGCTCCATCGCGTCAACATCCGCCTCGGTTTTCAC
CGCGAAAAGGTCCGACACCATACAGCTGCTGCTCACCCTCTCCATCGCCG
CCGCCGCGCCCGGTTCACCCCCGGGAGAGACCGACATCTTGTCGCTCTCG
TCAGACGCCGCGCTGGTGCTGCTGCCACCGTCGTCGAGGTCGTCCTCCTC
CTCCTCGGCGACAACCTCCTCCGCCGCCGCCACCTTCAGCCTTGCAGCCC
TGGCGGCCGCCGCCGCGGCCTTCTCGCAGAGCGACTTCGGCGGTGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig147:30045..30641+

>mRNA_L-elsbetiae_contig147.3415.1 ID=mRNA_L-elsbetiae_contig147.3415.1|Name=mRNA_L-elsbetiae_contig147.3415.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig147:30045..30641+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTTCCACGTCTCTGTTCGAGACGACACTAAAGTTGTTCGACATGAT
GTCGTCGACCATGAACCCGAACACGGGGTCGGTTGGCTCGTACTCCTCGA
TCTTGATCTCCGAGTCGTCGCCGTCATCGTCTTGCTCCATCGCGTCAACA
TCCGCCTCGGTTTTCACCGCGAAAAGGTCCGACACCATACAGCTGCTGCT
CACCCTCTCCATCGCCGCCGCCGCGCCCGGTTCACCCCCGGGAGAGACCG
ACATCTTGTCGCTCTCGTCAGACGCCGCGCTGGTGCTGCTGCCACCGTCG
TCGAGGTCGTCCTCCTCCTCCTCGGCGACAACCTCCTCCGCCGCCGCCAC
CTTCAGCCTTGCAGCCCTGGCGGCCGCCGCCGCGGCCTTCTCGCAGAGCG
ACTTCGGCGGTGATATGCCTTCCACGTCTCTGTTCGAGACGACACTAAAG
TTGTTCGACATGATGTCGTCGACCATGAACCCGAACACGGGGTCGGTTGG
CTCGTACTCCTCGATCTTGATCTCCGAGTCGTCGCCGTCATCGTCTTGCT
CCATCGCGTCAACATCCGCCTCGGTTTTCACCGCGAAAAGGTCCGACACC
ATACAGCTGCTGCTCACCCTCTCCATCGCCGCCGCCGCGCCCGGTTCACC
CCCGGGAGAGACCGACATCTTGTCGCTCTCGTCAGACGCCGCGCTGGTGC
TGCTGCCACCGTCGTCGAGGTCGTCCTCCTCCTCCTCGGCGACAACCTCC
TCCGCCGCCGCCACCTTCAGCCTTGCAGCCCTGGCGGCCGCCGCCGCGGC
CTTCTCGCAGAGCGACTTCGGCGGTGAT
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