mRNA_L-elsbetiae_contig14695.3409.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14695.3409.1
Unique NamemRNA_L-elsbetiae_contig14695.3409.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14695.3409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14695contigL-elsbetiae_contig14695:98..1589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size552
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.6505966-CDS-L-elsbetiae_contig14695:97..5081622815590.6505966-CDS-L-elsbetiae_contig14695:97..508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14695 98..508 +
1691682977.780893-CDS-L-elsbetiae_contig14695:97..5081691682977.780893-CDS-L-elsbetiae_contig14695:97..508Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14695 98..508 +
1622815590.6694815-CDS-L-elsbetiae_contig14695:1450..15881622815590.6694815-CDS-L-elsbetiae_contig14695:1450..1588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14695 1451..1588 +
1691682977.796273-CDS-L-elsbetiae_contig14695:1450..15881691682977.796273-CDS-L-elsbetiae_contig14695:1450..1588Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14695 1451..1588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14695.3409.1prot_L-elsbetiae_contig14695.3409.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14695 98..1588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14695.3409.1

>prot_L-elsbetiae_contig14695.3409.1 ID=prot_L-elsbetiae_contig14695.3409.1|Name=mRNA_L-elsbetiae_contig14695.3409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=183bp
LLCFCPLSKTRDQPQPRAELTRVYISTPSSGFIYSGCPSHRCTMPSYRCT
LSLDRLFSVQKQTLLALTPCSFPIIFPVSRGQQSSEASIAFYGRAKRTLV
MQITALSSVTMVYLVSTWVLHFTKFGMHTAIVLLSVKFLDGILGLCAVVH
FASPDRSTEAKRGARNVSPGTIVAEPSSHRPIS
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mRNA from alignment at L-elsbetiae_contig14695:98..1589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14695.3409.1 ID=mRNA_L-elsbetiae_contig14695.3409.1|Name=mRNA_L-elsbetiae_contig14695.3409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1492bp|location=Sequence derived from alignment at L-elsbetiae_contig14695:98..1589+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCTGTGTTTCTGCCCGTTATCTAAGACACGTGATCAACCACAGCCTCG
TGCTGAACTCACAAGGGTATACATCTCAACACCCTCTTCAGGGTTCATTT
ATTCAGGCTGCCCATCGCACAGGTGTACCATGCCATCGTACAGGTGCACA
TTGTCGCTAGACCGGCTCTTTTCCGTACAGAAGCAAACTTTGCTTGCACT
GACACCATGTTCGTTCCCAATTATTTTCCCCGTGTCGCGAGGACAGCAAT
CGTCAGAAGCATCGATAGCTTTCTACGGGAGAGCGAAGCGAACGCTCGTC
ATGCAGATTACGGCGCTCAGCTCTGTGACCATGGTGTATTTGGTGTCGAC
GTGGGTGCTCCATTTCACCAAGTTCGGGATGCACACGGCGATAGTCCTGT
TGTCGGTGAAGGTGAGTGGCAGACGCTGCAGAAATACTTCTTGGAGTTTG
CTTTTGGTTCGTCCTGTCTCATGAAAAGTCCGGATGGCGGCAGCAAGAAC
ATCCACGCCTACGACGAGGAACACAATACTCAGAGCAAGACGAATAGGTA
CTCGTTGAGAGGAGATTAGCACACAAAGCTAATCCCACCAAGATGCGGAG
TGCGTGGCAAGCGGAGTGCCGGATCAAAGTTTGCCGGTCATTCTTGATCA
TGGCCAGGTCAAAGGGAAAACTGTGGCCAAATGGAGATCGGAAGTAAGAC
GTGTGACAGAGGATGCGCGTGTGACAAAAGATGCGATCAGAGTGGGAGAC
GCCTAGACCATGAAAATGTCCGGAGCAAAAAATGAAGCAACGGGGGGAGA
GGTTGAACAGAAAGAACGACTGGTTTGCGAAACATGGCGAGCTGCGAAGA
TCACTCAGGGGTTACACGGGAAGCTACAGGAGGAGGAGAGAAGCAAGACC
AAACAACAATCTCAACAGTAGTAGTCTCGAAAGGGATGGTTGATCAAAGA
CAAAGTACGGAGGCGAGCAAAGTCGTCTCTCTGCTGGGGTGTAGAAAATC
GCCGCTGAATTCCCCCAACAAAGGAGATCGCCGGAAAATCAAATCATATG
TAAGCAACTATATGTAACGTCGGAAAGCTTCTCAAAGCCTCATATCTTGC
CGTGAAAGTCACCCAAGAGGGCTGGTTGCGATGGCCCTTTTCCTGCCGAC
CCGAAACGATGCGCGCTTTTGCATTGCGCTTCAGCCCCAGAACAAGTAAT
TGGAAGTAGGGGCAGGCGTGGATTTAGAGAGCAATTGACAATTCTGACGC
CATCAAGGCTTGCTCTGCTTCAGTGTGCTCAAGAAACGACATGACTCCTG
GCCCAGCTGATTGTTGTTTTGTTTCGTGCTCTACATCGCCACCCACACTT
CAGTTTTTGGACGGTATTCTGGGGCTGTGTGCGGTCGTCCACTTCGCGAG
CCCCGATCGTTCGACGGAGGCTAAGCGGGGTGCCAGAAATGTTTCTCCCG
GCACCATCGTCGCTGAACCATCATCACATCGGCCAATTTCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14695:98..1589+

>mRNA_L-elsbetiae_contig14695.3409.1 ID=mRNA_L-elsbetiae_contig14695.3409.1|Name=mRNA_L-elsbetiae_contig14695.3409.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig14695:98..1589+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCTGTGTTTCTGCCCGTTATCTAAGACACGTGATCAACCACAGCCTCG
TGCTGAACTCACAAGGGTATACATCTCAACACCCTCTTCAGGGTTCATTT
ATTCAGGCTGCCCATCGCACAGGTGTACCATGCCATCGTACAGGTGCACA
TTGTCGCTAGACCGGCTCTTTTCCGTACAGAAGCAAACTTTGCTTGCACT
GACACCATGTTCGTTCCCAATTATTTTCCCCGTGTCGCGAGGACAGCAAT
CGTCAGAAGCATCGATAGCTTTCTACGGGAGAGCGAAGCGAACGCTCGTC
ATGCAGATTACGGCGCTCAGCTCTGTGACCATGGTGTATTTGGTGTCGAC
GTGGGTGCTCCATTTCACCAAGTTCGGGATGCACACGGCGATAGTCCTGT
TGTCGGTGAAGCTCCTGTGTTTCTGCCCGTTATCTAAGACACGTGATCAA
CCACAGCCTCGTGCTGAACTCACAAGGGTATACATCTCAACACCCTCTTC
AGGGTTCATTTATTCAGGCTGCCCATCGCACAGGTGTACCATGCCATCGT
ACAGGTGCACATTGTCGCTAGACCGGCTCTTTTCCGTACAGAAGCAAACT
TTGCTTGCACTGACACCATGTTCGTTCCCAATTATTTTCCCCGTGTCGCG
AGGACAGCAATCGTCAGAAGCATCGATAGCTTTCTACGGGAGAGCGAAGC
GAACGCTCGTCATGCAGATTACGGCGCTCAGCTCTGTGACCATGGTGTAT
TTGGTGTCGACGTGGGTGCTCCATTTCACCAAGTTCGGGATGCACACGGC
GATAGTCCTGTTGTCGGTGAAGTTTTTGGACGGTATTCTGGGGCTGTGTG
CGGTCGTCCACTTCGCGAGCCCCGATCGTTCGACGGAGGCTAAGCGGGGT
GCCAGAAATGTTTCTCCCGGCACCATCGTCGCTGAACCATCATCACATCG
GCCAATTTCGTTTTTGGACGGTATTCTGGGGCTGTGTGCGGTCGTCCACT
TCGCGAGCCCCGATCGTTCGACGGAGGCTAAGCGGGGTGCCAGAAATGTT
TCTCCCGGCACCATCGTCGCTGAACCATCATCACATCGGCCAATTTCG
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