prot_L-elsbetiae_contig14684.3407.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig14684.3407.1
Unique Name	prot_L-elsbetiae_contig14684.3407.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	144

Homology

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BLAST of mRNA_L-elsbetiae_contig14684.3407.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 1.770e-46
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0

Query:   50 GWDDPAGVAQGRWAWGTEPPGEVQLNLAPRRRHGARTVPLVALLLLAAWLTVLAAALCLVVLPFLLGRLVFSLAHLPTHWTHDTASFAVGLTLLK 144
            GWDDPAGVAQGRWAWG EPPGEVQLNLAPRRRHGAR VPLVA+LLLAAW TVL AALCLVVLPFLLGRL+FSL HLP  WTHDTASFAVGLTLLK
Sbjct: 1072 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLK 1166

[Close]

BLAST of mRNA_L-elsbetiae_contig14684.3407.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.800e-46
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = 0

Query:   50 GWDDPAGVAQGRWAWGTEPPGEVQLNLAPRRRHGARTVPLVALLLLAAWLTVLAAALCLVVLPFLLGRLVFSLAHLPTHWTHDTASFAVGLTLLK 144
            GWDDPAGVAQGRWAWG EPPGEVQLNLAPRRRHGAR VPLVA+LLLAAW TVL AALCLVVLPFLLGRL+FSL HLP  WTHDTASFAVGLTLLK
Sbjct: 1156 GWDDPAGVAQGRWAWGAEPPGEVQLNLAPRRRHGARAVPLVAVLLLAAWATVLVAALCLVVLPFLLGRLLFSLIHLPRRWTHDTASFAVGLTLLK 1250

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig14684.3407.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig14684.3407.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LBR1_ECTSI	1.770e-46	90.53	RING-CH-type domain-containing protein n=1 Tax=Ect...	[more]
A0A6H5JWM1_9PHAE	1.800e-46	90.53	RING-CH-type domain-containing protein n=1 Tax=Ect...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 89..115
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..88
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 116..144
None	No IPR available	TMHMM	TMhelix		coord: 89..111

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig14684	contig	L-elsbetiae_contig14684:1695..3652 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig14684.3407.1	mRNA_L-elsbetiae_contig14684.3407.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig14684 1695..3653 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig14684.3407.1 ID=prot_L-elsbetiae_contig14684.3407.1|Name=mRNA_L-elsbetiae_contig14684.3407.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
VSHHGDGGGGGGGCRQWGAAVKAWWDGGEAGKDEEEGIIVGPPLRRPPPG
WDDPAGVAQGRWAWGTEPPGEVQLNLAPRRRHGARTVPLVALLLLAAWLT
VLAAALCLVVLPFLLGRLVFSLAHLPTHWTHDTASFAVGLTLLK