mRNA_L-elsbetiae_contig14678.3405.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14678.3405.1
Unique NamemRNA_L-elsbetiae_contig14678.3405.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14678.3405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14678contigL-elsbetiae_contig14678:3488..3969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size482
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.4335747-UTR-L-elsbetiae_contig14678:3487..36571622815590.4335747-UTR-L-elsbetiae_contig14678:3487..3657Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14678 3488..3657 +
1691682977.684884-UTR-L-elsbetiae_contig14678:3487..36571691682977.684884-UTR-L-elsbetiae_contig14678:3487..3657Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14678 3488..3657 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.4460897-CDS-L-elsbetiae_contig14678:3657..39691622815590.4460897-CDS-L-elsbetiae_contig14678:3657..3969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14678 3658..3969 +
1691682977.7003222-CDS-L-elsbetiae_contig14678:3657..39691691682977.7003222-CDS-L-elsbetiae_contig14678:3657..3969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14678 3658..3969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14678.3405.1prot_L-elsbetiae_contig14678.3405.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14678 3658..3969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14678.3405.1

>prot_L-elsbetiae_contig14678.3405.1 ID=prot_L-elsbetiae_contig14678.3405.1|Name=mRNA_L-elsbetiae_contig14678.3405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MWMVSRSVQEGDGSHRGGEAKQSEEERETKRSQGKQREAKRRSSTKKMKF
SITYRDFASCNSQNGIHFGNVAGHNMTCWWGVGKPHQNLTLRLFFHRIPR
WRAA
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mRNA from alignment at L-elsbetiae_contig14678:3488..3969+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14678.3405.1 ID=mRNA_L-elsbetiae_contig14678.3405.1|Name=mRNA_L-elsbetiae_contig14678.3405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=482bp|location=Sequence derived from alignment at L-elsbetiae_contig14678:3488..3969+ (Laminarionema elsbetiae ELsaHSoW15)
AACATAAAACACGTGAAAGCGATGACGGGGGCGAACTGTATCGCTAGAAG
CACGCTGCTTTTAGTGCCTGTCCGCCTGTTTGCGAACGACGGCGACGATA
ACGTTGTCGCGCTGACCTGGCTAACACTAAAACCTCGTCACTGTCGCTTC
CGTGCGCGTCTGATGCGGGGATGTGGATGGTGTCTAGAAGCGTTCAAGAG
GGAGACGGATCGCACCGTGGAGGCGAAGCAAAGCAAAGCGAAGAAGAGCG
TGAAACAAAGCGAAGCCAAGGGAAGCAAAGGGAAGCAAAGCGAAGAAGCA
GCACCAAGAAAATGAAATTCTCGATCACATACCGAGATTTCGCGTCCTGC
AACTCGCAAAACGGAATCCACTTTGGCAACGTCGCTGGGCATAACATGAC
CTGTTGGTGGGGGGTTGGGAAACCGCACCAGAACCTCACATTGCGCTTAT
TCTTCCACCGAATACCACGTTGGAGAGCAGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14678:3488..3969+

>mRNA_L-elsbetiae_contig14678.3405.1 ID=mRNA_L-elsbetiae_contig14678.3405.1|Name=mRNA_L-elsbetiae_contig14678.3405.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig14678:3488..3969+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGGATGGTGTCTAGAAGCGTTCAAGAGGGAGACGGATCGCACCGTGG
AGGCGAAGCAAAGCAAAGCGAAGAAGAGCGTGAAACAAAGCGAAGCCAAG
GGAAGCAAAGGGAAGCAAAGCGAAGAAGCAGCACCAAGAAAATGAAATTC
TCGATCACATACCGAGATTTCGCGTCCTGCAACTCGCAAAACGGAATCCA
CTTTGGCAACGTCGCTGGGCATAACATGACCTGTTGGTGGGGGGTTGGGA
AACCGCACCAGAACCTCACATTGCGCTTATTCTTCCACCGAATACCACGT
TGGAGAGCAGCTATGTGGATGGTGTCTAGAAGCGTTCAAGAGGGAGACGG
ATCGCACCGTGGAGGCGAAGCAAAGCAAAGCGAAGAAGAGCGTGAAACAA
AGCGAAGCCAAGGGAAGCAAAGGGAAGCAAAGCGAAGAAGCAGCACCAAG
AAAATGAAATTCTCGATCACATACCGAGATTTCGCGTCCTGCAACTCGCA
AAACGGAATCCACTTTGGCAACGTCGCTGGGCATAACATGACCTGTTGGT
GGGGGGTTGGGAAACCGCACCAGAACCTCACATTGCGCTTATTCTTCCAC
CGAATACCACGTTGGAGAGCAGCT
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