mRNA_L-elsbetiae_contig1467.3401.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1467.3401.1
Unique NamemRNA_L-elsbetiae_contig1467.3401.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1467.3401.1 vs. uniprot
Match: D8LR97_ECTSI (DIX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR97_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 7.250e-76
Identity = 166/210 (79.05%), Postives = 172/210 (81.90%), Query Frame = 3 
Query:   36 MIRYFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRFHFRFKKKFRDAFVWVDMPDPAATVPACDGVFTAKITRLSDGRGGVAGNPARGGNAMPAPPAGVRRDVGGXXXXXXXXXXXXXGLGGDDLLNMGHGTASGAIPXXXXXXXXXXXXXXXXXXFDSSPSHGAPPQTASASGSAAGPPRAV-RSPPMHAAPMSHMAGA 662
            MIRYFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGR+HFRFKKKFRDAFVWVD+ DP A VP+CDGVFTAKITRLSDGRGG    P RG  AMP    GVRRDVGGXXXXXXXXXXX    GGDDLLNMGHG A G   XXXXXXXXXXXXXXXXX FDSSPS G PPQ  ++  SAAG  R + RSPPMH APMS M  A
Sbjct:    1 MIRYFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRYHFRFKKKFRDAFVWVDIADPGAAVPSCDGVFTAKITRLSDGRGGGGVPPGRG-EAMPXXXXGVRRDVGGXXXXXXXXXXX---FGGDDLLNMGHGIAPGXXXXXXXXXXXXXXXXXXXX-FDSSPSQGVPPQQTASVPSAAGAARPMPRSPPMHPAPMSQMGAA 205
[Close]
BLAST of mRNA_L-elsbetiae_contig1467.3401.1 vs. uniprot
Match: A0A836CD85_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD85_9STRA)

HSP 1 Score: 105 bits (263), Expect = 9.860e-25
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 3 
Query:   36 MIRYFIPADGDDPSHPNVFQLPSGLV--GSGSVRCGDVERHFPLPGRFHFRFKKKFRDAFVW 215
            MIRYFIP+DGDD  HPNVFQLPS  V  G+G++R GDV RHFPLPG +HFRFKKKFRD FVW
Sbjct:    1 MIRYFIPSDGDDADHPNVFQLPSSAVSGGNGTLRLGDVMRHFPLPGTYHFRFKKKFRDGFVW 62
[Close]
BLAST of mRNA_L-elsbetiae_contig1467.3401.1 vs. uniprot
Match: A0A8J2WQP4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WQP4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.990e-19
Identity = 49/96 (51.04%), Postives = 58/96 (60.42%), Query Frame = 3 
Query:   39 IRYFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRFHFRFKKKFRDAFVWVDMPDPAATVPACDGVFTAKITRLSDGRGGVAGNPAR 326
            IRY +P DGDD +HPNVF+L    V  G+VR GDV RHFPLPGRFH RF+++     VW D  D AA  P   G    K +RL+   G  A  PAR
Sbjct:    4 IRYHVPEDGDDAAHPNVFEL----VSEGAVRVGDVRRHFPLPGRFHLRFRRRVAGLEVWADAADDAAPAPRLAGRILVKASRLA---GDAARAPAR 92
[Close]
BLAST of mRNA_L-elsbetiae_contig1467.3401.1 vs. uniprot
Match: A0A2R5GFE7_9STRA (DIX domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFE7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.290e-19
Identity = 47/105 (44.76%), Postives = 60/105 (57.14%), Query Frame = 3 
Query:   33 TMIRYFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRFHFRFKKKFRDAFVWVDMPDPAATVPACDGVFTAKITRLS--DGRGGVAGNPARGGNAM 341
            T + YF+P DGDD +HPN F L         VR  DV   FPLPG +H RFKK F++ +VW+D+ D    VP  +G   AKI+RLS   G  G AG    GG+ +
Sbjct:    4 TSVYYFVPEDGDDEAHPNFFSLSKPAA---KVRAADVRAAFPLPGAYHLRFKKAFKNTYVWLDVVDDGQIVPRFEGQIFAKISRLSAQHGAAGAAGQMGSGGSPV 105
[Close]
BLAST of mRNA_L-elsbetiae_contig1467.3401.1 vs. uniprot
Match: A0A7S2RG08_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RG08_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.770e-19
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 3 
Query:   33 TMIRYFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRFHFRFKKKFRDAFVWVDMPDPAATVPACDGVFTAKITRLS 290
            T I YF+P DGD+  HPNVF +      S  VR GDV++ FPLPGR+HFRFKK F++ FVW+D+ D    VP  +G   AK++R S
Sbjct:    4 TAIYYFVPEDGDEEDHPNVFTISRP---SSKVRLGDVKKTFPLPGRYHFRFKKAFKNTFVWLDILDDYDVVPRFEGQLVAKVSRTS 86
[Close]
BLAST of mRNA_L-elsbetiae_contig1467.3401.1 vs. uniprot
Match: A0A813H049_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H049_POLGL)

HSP 1 Score: 91.3 bits (225), Expect = 4.350e-18
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 3 
Query:   45 YFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRFHFRFKKKFRDAFVWVDMPDPAATVPACDGVFTAKITRLSDGRGGVAGNPARGGNAMPAPPA 356
            YFIP DGDD  HPN F++     G   V+  ++   FPLPG++HFRF+ K+    VW+D+ +  + VP CD    AK+ R++ G  G +  P+ G NA  A PA
Sbjct:   16 YFIPGDGDDADHPNTFEVQHQGPG---VKLREIRACFPLPGKYHFRFRMKWEAGHVWMDVTNEESIVPTCDDKIVAKVLRVNWGSSGKSQQPSAGSNAASAAPA 116
[Close]
BLAST of mRNA_L-elsbetiae_contig1467.3401.1 vs. uniprot
Match: A0A485L1K4_9STRA (Aste57867_14772 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L1K4_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 9.030e-17
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 3 
Query:   36 MIRYFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRFHFRFKKKFRDAFVWVDMPDPAATVPACDGVFTAKITRLSDGRGGVAGNPARGGNAMPAPP 353
            M  YFIP DGD P H N+F +PS      S++   +++ FPLPG+FHFRFK+ F   +VW+D+ D    VP  +GV  +KI+R++D       N A   N  P+ P
Sbjct:    4 MFNYFIPDDGDTPDHLNIFPIPSQY--KNSLKLAHIKKEFPLPGKFHFRFKQSFEGTYVWLDVGDDDP-VPDFNGVIISKISRVADAEAPAKVNDASASNKAPSAP 106
[Close]
BLAST of mRNA_L-elsbetiae_contig1467.3401.1 vs. uniprot
Match: A0A4D9D8A1_9STRA (DIX domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8A1_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.020e-16
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 3 
Query:   36 MIRYFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRFHFRFKKKFRDA----FVWVDMPDPAATVPACDGVFTAKITRL 287
            MIRY+IP DGDD SHPN+F LP  +     +R  DV +HFPLPG +HFRFK +         VW+D+ +  A +P  DG + AK++R+
Sbjct:    1 MIRYYIPGDGDDASHPNIFHLPPSVQQPPRLR--DVRQHFPLPGAYHFRFKTRLDGTPDKKAVWMDVTEDVAELPTFDGFYIAKVSRM 86
[Close]
BLAST of mRNA_L-elsbetiae_contig1467.3401.1 vs. uniprot
Match: A0A6G0XGT4_9STRA (DIX domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGT4_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.440e-16
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 3 
Query:   36 MIRYFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRFHFRFKKKFRDAFVWVDMPDPAATVPACDGVFTAKITRLSD 293
            MI YFIP DGD P H N+F +PS      +++   +++ FPLPG+FHFRFK+ F   +VW+D+ D    VP  +G+  +KI+RLSD
Sbjct:    4 MINYFIPDDGDTPDHLNIFPIPSQY--KNNLKLSHIKKEFPLPGKFHFRFKQSFEGTYVWLDIGDDDP-VPDYNGLIISKISRLSD 86
[Close]
BLAST of mRNA_L-elsbetiae_contig1467.3401.1 vs. uniprot
Match: A0A024UV13_9STRA (DIX domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UV13_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.070e-15
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 3 
Query:   36 MIRYFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRFHFRFKKKFRDAFVWVDMPDPAATVPACDGVFTAKITRLSD 293
            MI YFIP DGD P H NVF +PS      +++   +++ FP+PG+FHFRFK+ F   +VW+D+ D    VP  +G+  +KI+R+SD
Sbjct:    4 MINYFIPDDGDTPDHLNVFPIPS--QHKSNLKLAHIKKEFPIPGKFHFRFKQAFEGTYVWLDVNDDDP-VPDFNGLIISKISRISD 86
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1467.3401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR97_ECTSI7.250e-7679.05DIX domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CD85_9STRA9.860e-2575.81Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A8J2WQP4_9STRA1.990e-1951.04Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2R5GFE7_9STRA2.290e-1944.76DIX domain-containing protein n=1 Tax=Hondaea ferm... [more]
A0A7S2RG08_9STRA3.770e-1951.16Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A813H049_POLGL4.350e-1841.35Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A485L1K4_9STRA9.030e-1741.51Aste57867_14772 protein n=1 Tax=Aphanomyces stella... [more]
A0A4D9D8A1_9STRA2.020e-1646.59DIX domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A6G0XGT4_9STRA5.440e-1646.51DIX domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A024UV13_9STRA3.070e-1545.35DIX domain-containing protein n=2 Tax=Aphanomyces ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1467contigL-elsbetiae_contig1467:6487..15602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score252.3
Seed ortholog evalue2.6e-64
Seed eggNOG ortholog2880.D8LR97
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Apicomplexan specific region near N-terminus. Source PGD
EggNOG OGs2AQHG@1,2RZJ0@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionDIX domain protein
Ec32 orthologEc-06_003340.1
Exons7
Model size1259
Cds size810
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.134148-UTR-L-elsbetiae_contig1467:6486..65211622815590.134148-UTR-L-elsbetiae_contig1467:6486..6521Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1467 6487..6521 +
1691682977.506016-UTR-L-elsbetiae_contig1467:6486..65211691682977.506016-UTR-L-elsbetiae_contig1467:6486..6521Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1467 6487..6521 +
1622815590.234458-UTR-L-elsbetiae_contig1467:15188..156021622815590.234458-UTR-L-elsbetiae_contig1467:15188..15602Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1467 15189..15602 +
1691682977.5728939-UTR-L-elsbetiae_contig1467:15188..156021691682977.5728939-UTR-L-elsbetiae_contig1467:15188..15602Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1467 15189..15602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.1461256-CDS-L-elsbetiae_contig1467:6521..65291622815590.1461256-CDS-L-elsbetiae_contig1467:6521..6529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1467 6522..6529 +
1691682977.5146172-CDS-L-elsbetiae_contig1467:6521..65291691682977.5146172-CDS-L-elsbetiae_contig1467:6521..6529Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1467 6522..6529 +
1622815590.1576061-CDS-L-elsbetiae_contig1467:10638..108051622815590.1576061-CDS-L-elsbetiae_contig1467:10638..10805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1467 10639..10805 +
1691682977.5216775-CDS-L-elsbetiae_contig1467:10638..108051691682977.5216775-CDS-L-elsbetiae_contig1467:10638..10805Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1467 10639..10805 +
1622815590.167996-CDS-L-elsbetiae_contig1467:11817..120271622815590.167996-CDS-L-elsbetiae_contig1467:11817..12027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1467 11818..12027 +
1691682977.5292482-CDS-L-elsbetiae_contig1467:11817..120271691682977.5292482-CDS-L-elsbetiae_contig1467:11817..12027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1467 11818..12027 +
1622815590.1835973-CDS-L-elsbetiae_contig1467:13116..132081622815590.1835973-CDS-L-elsbetiae_contig1467:13116..13208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1467 13117..13208 +
1691682977.536932-CDS-L-elsbetiae_contig1467:13116..132081691682977.536932-CDS-L-elsbetiae_contig1467:13116..13208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1467 13117..13208 +
1622815590.1933134-CDS-L-elsbetiae_contig1467:13657..138821622815590.1933134-CDS-L-elsbetiae_contig1467:13657..13882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1467 13658..13882 +
1691682977.5451238-CDS-L-elsbetiae_contig1467:13657..138821691682977.5451238-CDS-L-elsbetiae_contig1467:13657..13882Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1467 13658..13882 +
1622815590.2054446-CDS-L-elsbetiae_contig1467:14218..142751622815590.2054446-CDS-L-elsbetiae_contig1467:14218..14275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1467 14219..14275 +
1691682977.554639-CDS-L-elsbetiae_contig1467:14218..142751691682977.554639-CDS-L-elsbetiae_contig1467:14218..14275Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1467 14219..14275 +
1622815590.2225187-CDS-L-elsbetiae_contig1467:15137..151881622815590.2225187-CDS-L-elsbetiae_contig1467:15137..15188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1467 15138..15188 +
1691682977.563728-CDS-L-elsbetiae_contig1467:15137..151881691682977.563728-CDS-L-elsbetiae_contig1467:15137..15188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1467 15138..15188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1467.3401.1prot_L-elsbetiae_contig1467.3401.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1467 6522..15188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1467.3401.1

>prot_L-elsbetiae_contig1467.3401.1 ID=prot_L-elsbetiae_contig1467.3401.1|Name=mRNA_L-elsbetiae_contig1467.3401.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=270bp
MIRYFIPADGDDPSHPNVFQLPSGLVGSGSVRCGDVERHFPLPGRFHFRF
KKKFRDAFVWVDMPDPAATVPACDGVFTAKITRLSDGRGGVAGNPARGGN
AMPAPPAGVRRDVGGGGGVGGGGGGGGAGLGGDDLLNMGHGTASGAIPGP
GLMAGGGSQPDDLLGMFDSSPSHGAPPQTASASGSAAGPPRAVRSPPMHA
APMSHMAGAGAGVGGGGGGGFGAGSPGMGAHRPAQSGSMGVQWQQQQQHP
QHQQQQQFARFPPQGRGNM*
back to top

mRNA from alignment at L-elsbetiae_contig1467:6487..15602+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1467.3401.1 ID=mRNA_L-elsbetiae_contig1467.3401.1|Name=mRNA_L-elsbetiae_contig1467.3401.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9116bp|location=Sequence derived from alignment at L-elsbetiae_contig1467:6487..15602+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGGAGGGAGCTGCGAAGCTGCGTGTGTCTGACCATGATAAGGTGAGAG
AGGGAATGGTTGTGAGACCTTTTGGCGACCTCTGAACTGTGTTGGCGCGA
GGGCGAATCCGCAATTGAGCGAGCAACGCACTTCGATTAATCACTCCGAA
CTCCGAACGAAATGCTATACGTCGGGTGCCTACTTTCCTGGATGGCATCC
AGCTTTGGCAAACTCCCATGTAGCACGAGACAGATAGCTTGTGTGTGTCA
AGACACGTAATACGAGATGGTCCTCTCACAGCCGGAAAGTGTAGATGTTC
CAACGCACCTCGCTAACCGACACAGAAATTCCGACGTTATCTCGCCGCCT
CCTTCGTTGTGTCCAGAGTTCCAAACGCATCCCGTGTTCTCTCTTTCTTG
CTCTAGTTGTGCGCACGGGCGGCTTTCCTCCGCTAAGTCACACGTAACAC
CGAAGTCGAGCAGGTAGATATAAGTTCATGAGTTCCCATATTGCGACATA
CCTACATCTGTACGATATTTTTCTAGATTTGCATCACGTCCTGAGTCCAG
GGAGAGAGAGTGCACGAGTCCACCTTATCACGCTGGGGAGCACGCGGCAT
GTACACAGCAGTATGTGTGTGCTCTCCTTTTTGTAAATTTGCTGCGGTCT
GAGTAATTCTAGCACAGATCCGCAGTCTTGGCCGTGCAAGAGTGTGAGCA
ACCGAACGTCATACGCAATTTGTAATCTTGCTGCCTGACTAACGCATCCC
ATAGACTATATCTAAACTATTTTCCCCAGAGGGGGACACCTGCACCGGTC
TGTCCTTCTGGTACACGTATATACATAACACATGTATCTTGATCCCCTCC
CATTTTTGTATCAGTGTATCAGTGTTGTTGGTAGACAGGTTCCGCCGCTT
TTTTTAAAAACAAACAATGAATCAAAGATGGAACCTACCCCACGCTAGAG
CAAGGACTCGATATGGAGTTCAAACTGTATTCCATACAACAGTAGTGACG
TAATATTTGGCGAAGCGAGCAGAAAAACAACCTAAAATATCAGAAGAGTT
CAACATCTCCCCTGCAAAGATTTAAGATTTGCGAGGTCGGAAAAGGCGCG
GGGGAAAATGACGATTTTTGCGCCCCCTTGAGAAACCGTTCAAAAAATCA
CTTGGATATGCACCGGGCAGAGCAGCCGGCAGACAAACACCACGATAGCT
CAGCCATCGCAGGTCAAGACGGCGATGTCTGCGACGTGTCCTGTCGCCAA
GGCAACAGAGACGCAAGAAAGTCAAACTTCCGCTCGTAGAGAACGCGTAT
CCCCAAAATATCACCGTGTCCAAAAACATCGCCTGGGGAAAGAGAGACGA
CAGGACTGTGAAAAGAGAGAGAGAGAACCAGCACAACGCGGGGCATCGGC
GAATCTCCCAGCCCACGCATTCAGCAAGTCAGAGGTTTTGTAGCACCGCG
ATTTTCCCGGCCGGTAGATGTTAAGCCCCTGGGTTAAACTTGGTGCCTTG
GATAGCCAAGGAGATATGCTGTCCTGCTGACCCAAGAGACCGGCTCAATG
ATAACTTGTCCCCCGAGATCGCTCCCCCTGCACCAACCGAGGTTTCAGCG
GGAGCATTTTTTTATCACACCTGGAGCGCACACACGCAAGTCAGACAACC
GACAGCAAAACCTCCTAGCAGTGCTACTTTGGGTAGCCAACAAAATTTCG
TGCCTTTCAGGCAGCATTGGCGAGGTGGTGGACTGGCAAAACGCGAAAAA
CTTTCACGGGGCTGACAGGTGTTTGGCCCCGCCTACCTTAAATGCCTCCC
TATCTCCGGCCTGTATCCCATAACGCTATCCCCCCCCCCCCCGGCCGACA
CAACCGCCCTCCGACCGTAATTTTTTCACCTTGGGGTGCTCTACCAACAC
CACACGGTTGTTTATATTTCCACCTCTACCAACAGAAGCGGTGGCCTATT
GCCGCAGCTTTGTCGAAAAAAGACGGCGCGGAAAAGGAGTTCCGGTTGAA
CCCCCACGGAGTCCCCATCTCAATGTGGGTTATTAGATTCCGTTTTTGAA
TAACCGATTTTTATTTCAATATCTGTGCAGCCCTGTCTAGATCCGTGCAC
TAGTTAGTTTCTTCTCCGTGACCCGTCCCGTGATTTCAGCACACGCTGCT
GATACACACACCTGTTAAGTGTTCCACCCCGGGCATGTTCTGTTGGTTGT
GTTGTCTTCACATTAAAAAGCTTTCCGATCTCTCTATCCAGTACACCTCC
ATGAGTCCGCACTAATCCAACACTGACACGGTCGATTCCCGTGTGTATCG
GCAAAAACAAGTTGATTTCAGAGAGCGGCAACAACCTCCTCTACTACTAG
GCGGGTGGGCAATGAGCCGCACAGAAGCACCGGCTCAATACCTTCAGTAA
TCTTATCTGCGATGCTGCCTGCGCTCATGGCAAGGCGTGCTATCTCACTG
AAGTACCTCCTCTCTCACACACGCGCGTAACACACGCACATACACACCGG
ATTTGACTCTTCCCTTGGTGAACAAAAGTTCTGAACCCACATACGTATGT
GTAGAGAGAGAGAGGCGCAAGACGAGAGAGGAGATTTTTCGCGCGCGCAC
ACACACACACCTCCTGTTGCCTACCGTCGACTATTCCAGACGGTACTGAA
CAGATGTGTCGACACTCCTACCCGCGCTCTTTTTTCGGAGCTGGTTGGCG
TTTCGGCTCTCGTCGACACCGAATTCTACAAAACATTGGTTCGCCCACGG
AACCATGAAAATCGAATAAAAAACGCACCAAACAACTTGAAGCCTCTGCT
GAGCAAAACGCTCAAACCGTGATTGTGAATTCAGTTCGTCGAGGAGAGGT
ACAGCATTAGTACACCAAAGAGCTCCGAACAAAGAGCGCGAGTAGAGCTG
TAGACGCATCTGCTCAGTTCCGTCTGGAACGACTGACGAGACACAGGGTG
TGTGAAAAGCGACTTTTCATGGTATTTTTGTCCCCCCCTTCTCTCACAGA
CGCACACCCGCGCGCACTTTTGGAACAGCCACACCCCTCTGTGCCGTCAG
CACCAACCACATCCCTGTATGACCAGTGAACCCATGCCGCCCTTCCCTCG
CCAGGGTTGTCTTGCCCTTCCCTCCTCTCAGCGCTGGTGCTGCACCTCTG
TACTCTGTCCGTGTTTTGTGTGTGTGCTCCTGTTTTGTGTCTCCTTGCTC
CTTGTGCATTCCCGGGGGTGGGTCGTAATCGCCCCGGGTCTCCGAAATAG
ACTTGTACAAACGCCCGTGAAGCACGGCCATCTCTTGTGCGGAGCACAAC
TAAGCCTGCGTGACAAAAAGGGCCTGATGCATCTTCCCCTCTCATAAGCC
AGCAGATCGTTGATCGGTGCTCTTAGACGTTGCTCTCGCCGAAGAAGAGG
GTATATTTTATGACGGCCGTATTCAAGTCTGGAGGGGCGCTTTATACACG
ATCGGAGGAGCGTTTGGCTGACGTTTAGAGCTTTTTTCCCCTCCTGGGAT
GAAAGGAAAACAAGATCGCGGCTTCGCCGCTCCGCGGCTCATTACAACTG
TTTCCTGGTAGTGACACCCGTGGGAATTTCGTCCAAGTTGAGGCGTATTG
TTGCCTGTGGAGAGGAACGGGGCGTTCTTTCGCTGCTCGCGGCGGAGGCG
CTGCTTGTCTGCCGAGGAACGTGTGGAGGCGTTTTGGTTTGTGCTCGGCG
TCATGTCTCACTCAATATTTCCATCTGCAGATGCTTTTTTTTTCAATGGA
GAGCCTCGGGTCTGTTGTCCGTCGATAGAGGAGACTATCTGTTCTGATGT
ATACTTGTACAAGACGCCCGTATCTGTGTGACGCTTCAGGATCCGTGGGC
AAAAGCGATTTCCAGCACAGGAAACGTGGGAGCGCAAGCCTCTTTTGACT
CCTTGTTTGATAGTGTTGATTTCCACAAGAGAAGGCGCTAATCCACCCAG
GAGACCGCTCGTTCTTTGACTAAACTATCGGCCGTAACCCCCTCCTATAC
CACGTTCAAGAGTTCAAGGTGCCTCCACAAGTTACGAGAGGAGTGGGGGA
ACCGGTGTCCCAATACTATATATCCTGAGGTATCTCCGCGCGCTCGGAGA
GAGTGTCACAACACCCCCCCCCGCCCGCGGCGTATCGGCTCTATTTACGC
AGGTACTTTATTCCGGCGGATGGGGATGACCCGTCTCACCCAAACGTGTT
CCAGCTTCCGAGCGGGCTGGTGGGGAGCGGGTCGGTACGGTGCGGAGACG
TGGAGAGGCACTTTCCGTTGCCCGGGCGGTTCCACTTTCGGTTCAAGAAG
AAGTTCAGGGACGCCTTCGGTGGGTGGGATGGGGTGGAGGGGAGTGGGTT
GGGTTGGGTTGGGTTGGTTGTGGTTCAAGAAGAGGTTCAGAGACGCCTTC
GGTGGGGTGGGGTGGGGGGGGGGTGGGGTAGGTTAGGTTGTGGTTTATTA
TGAAAAAAAGGCATCGGAATAGAGCGTGCGTGTGCAGTGTTAAGGGGTTG
TGTATGTGTGTTGTTTTATTTGTTTACGGGCGTTGTGGTAAATAGATGGA
AGAATGACACGTTTACGGGCCGGGGCAAAGGGACGATTCAGGAGTAAATA
TTTATTCACGTCAATACATTTATTGCAGCTTCACCTTGCTGCAAGTGACC
CCCCGAAGGTCAAAATGGAAGGATGTTTGGCGTTGTGTGTCGTTTTCTGT
CGGTGTTGGTGTCCTCGGCTGGCTGGCTGGCTGGATCTCGTGGCGGGCTT
TTTCTTCGGTGGTCGAGATGTGCCACAGGGCGTGCTCGCTGTGCCGTTCA
CCGAAGAATGCAGCCCGCCCGCCCGCCGGATGTGCGGGGCCATAGTTTCG
AGACATTTAGAGACATGCGCAGCAGACAAGGCGTGTCTTTTTCTCCCACT
TGTTTGCCATGCTGTGTGTTTGTATGTTTTCGTGATGTTGACAGCCCTCA
CGTTTTCCCATCCCCCCTTCGGCCGCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CTNNNNNNNNNCCCTTGTTTGCCCTGCTGTTGGTTTGTTTGTTTTCGGGA
TGTTGCCAGCCCCCCCGTTTTCCCCTCCCCCCTTCGGCAGCCCCCCCCCC
CCCCCTCCTACCCCCGTACGGAGCCACGCGCGACCCGTTTCGTTCTCCTT
CCTCTTTCTCGACTCTCCTCCTCCCCCGCTCTCCCCTGCTCTCCCCTCGC
CGACTCACGCTCGCGCTGAAATCCTGATTTATCGCCGTTCGTTTTGCCTC
GACTCATCGTGTTTAATCTGGGCCCTGCCAGTGTGGGTCGACATGCCGGA
CCCTGCCGCCACCGTGCCTGCCTGCGACGGGGTTTTCACAGCCAAGATCA
CGCGCTTGTCGGACGGTAGGGGAGGCGTCGCGGGAAACCCGGCTAGGGGG
GGTAACGCGATGCCCGCGCCCCCGGCTGGCGTGAGACGAGACGTCGGTGG
AGGCGGAGGTGTGGGAGGAGGAGGAGGAGGAGGAGGTGCTGGTGAGTAAC
TGCCGTAGGGAAGGGAGCGATTTTTGATGTGCGCCCTCCGAAAGGAGAAG
GCGGGAAGGGGGCACGTGGGAGCATAAATAGAGAGGGGGGGGGAATTTTG
TTCGGTCAGCGAGTGTGGTGTTTCTTCGTGTCTTGTACTGCCAGCTGAGT
CCCTCAGGAACAGCTACGTAAGGAGGCGTTTATTTTTAAGGGGGCGTGTA
CTTCTGTGTGTGTGGAGTCGACCCCGCCCTTTGCTCTCTGCTCACTACCC
ACCCCACCGAACCACAGCGACGTGCCGACCGGGTGTTTTTGCTGCTGTAG
CGTGGCTTTGCCACACTGTCTTTGCTACTTTGCTGCAGTTGATCTTCCGC
TGCGACGGGCATGGCGCTGCCGTAGCTGCGTCGATTGCATCTCTCTGAAG
TGCTCTAGGGGTCTTGCTCCAGCCAGCCTCGCTTGGAACCCATTGCGAGG
AAGGAACACGAGGCGTATAGCGCTGAGGATATTTTTTAAAACAAACAATG
ATCAAAGATGGAACCTACCCCACACTAGAGCAAGGACTCGATATGGGGTT
CAAACATATCCCCCTGAGCCCCTCCCCGCCTCGGCCGCAAGTCCATGCTC
TAAAGTCCATTTTTTGTTTTCCCTCCCGTCGTTGGCTTATTCGTCGTCTG
CCCCACTGGGCCCCCTTCCTCCACTACGACTAGCTAGACGACCCAACCGG
GGTCACACTTGATGATAAGTTATAATTATCCGGCCCGATTTTTCGGTTCG
ATCGAAATGGTGGCTGGCGAAGTCGGTTGTTTGATTGGCCGAGCCGTCCG
GAAACTTTCGGGGGGTATTCCCCCAGCACTTGCACACAGGCAAAAAAGTT
GCCGCGTGTGCAAGCCTCCCCCCTGAACACACGCACAGCATCCAACCTGC
ATGCACCCCCTGCAGTTTCGGGGAATATGTATTCTCCCCAACACTTGCGC
TCACGTAAAAATATGGTTGAGAAGGTGTCGCGTGTGCAAGGCTTTCCCTT
GAATGAACACACGCGCATACGCCTCTGACCTGCACCCCCTGAAAATGGTG
TGCACGCCCCTGCTTGTCGCCCCACGATAGGGCTCGGTGGAGACGACCTG
CTCAACATGGGCCACGGGACGGCATCGGGAGCTATCCCGGGGCCTGGGTT
GATGGCTGGAGGAGGCTCCCAGGTTAGCTCCTGCTTTAGGACAGTACCGC
CCGTAGTGCACGCCGTGTCAAGCCTGTGTCTTGTCACTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTTTGCAGAAACG
AGTTTGCGGCGTGTGTCATGCATGCCCTTGCTGCCGGCTCTGCAGATCAA
GTCGAGAGTGTTCAGAGGAATACGTTTGCATGCAGCCTTTTATTGGGGAT
GTTACGGGAAAATGCCGAGTCTGCTTCTACGAGCCGAGAATCCTGCTCCG
ACACGCAGTGCTTTACGGCAGGCGTCCGTAGGGCCACTGCCTGGTGTTCC
GCGAAAGGATCGGGGCGAAAAGTATTACAACCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCACCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCGTTCTCTAGCCTGACGACCTGCTCGGCATGTTCGACAG
CTCCCCATCCCACGGGGCACCACCACAAACGGCGTCGGCGTCTGGGTCAG
CGGCAGGGCCGCCAAGAGCAGTGCGGTCGCCCCCTATGCACGCTGCCCCG
ATGTCCCACATGGCAGGGGCAGGCGCCGGCGTCGGGGGCGGAGGCGGGGG
CGGGTTCGGAGCGGGTTCTCCCGGCATGGGCGCTCATCGACCAGCGGTGA
GAACGGAGCGATCGGGGGTGTGATGGGGGGTGATGGCGTGTGCAGGTGGT
GCGTTGTGATGGCGCGGCCCGAGCTTGTCGGCGTGCTTGATGAGGCGTCA
CTGGAACGAACGGCCGGGGACGAAAGGTGGTTGGTTGGATCTGTTGCCCG
TTGCGTCTTGGGGGCTGCTGCTGCTGCTGCTGCTGCTGCCTGCAGATACT
AGGTACAGAACTGGCGCTGGGCACACTTGTTGCTGATATTCCTTGCTTTG
CTTCGACATTGCTCGTTTGCGTGTCTTCGTGTTGTTTTGTGACTGGACGG
GCGCCGGCACAACTCCTCCCTGCCTGGTTCAGCAATCCGGTTCGATGGGT
GTTCAGTGGCAGCAGCAGCAACAACATCCCCAGCACCAGGTAGCCGCCCG
CCGCCTCTGTCTTCGTCTCATGTTGCGTCCTTCTCGTTAGACCACTGCCC
GTGTTCCTCTTCTTCCCTCTTCCTCCTTCGCCCCTTCGCTGAAGAGTTAG
CTTCGCCCCTTGCGCTCAAGAGTTAGCCACACATGATGAACCCCCCTCCT
ATGTGACCCCGGTTGGGTCGTCTAGCTAGAGTAGAAGTGGAGGATGGGGG
CCAGAGGGGCAGACGACAAAATCCAATAATGGGCAGATACAAATAAATAA
AAAAAAAACTATTTTGCAGGAGAGGTCATGCGTTTCCCCCCACATTTCAG
CGCATGTTTCGCGGTTAAATACACGTAAATAAGCACAATCCTGAGAATAA
CGAGGAGGGCCTGTACCCGTTAACTCGCCGCCTACCGTTACGTACCGGCA
TGGCGGCACTTCACCCCGCGCCTGTTGAGAGATCCGCTTTCGCTGCTGGT
AACCAAATCCTTCAACGTATAGAAGCCGAAACCAAACCATTAGACCAGTC
AGCAGAAAAAGTGCTCAGTCTGGGATTCGAACCCATGACTAACTTTTATA
GAAGCCAAAACCACGCTCGCTGACTGGTCTCGCTGATTGATCTAATGGTT
TGATTTCAGCTAATCGAACCATTAGACCAGTCAGCGCTCGCTGATTGTCT
CGCTGACTAGTCTAGTGGTTTGATTTAAGCTTTTATAAACGCTACCAAGC
AGGGCAGAGCTGATTATTCTCCCACGTTTTACACGCCGCCGAACGCTATT
ATGTCTGTACCTTGGTTGTTGCCTCTTTTTCGGGGCCTTGGCTTATCACC
ACCCCCGTCTGAAAACCTCACCGTGCCCCGTCGTGTTGTCGTCTGCAACA
GCAACAACAGCAATTCGCAAGGTTTCCTCCTCAAGGGCGCGGCAACATGT
AAAGGCGCCATGTTGCGCAGCGCACCCGCAAATCACGCGGAGCAGCGCGT
TGCCAGCAGCGCGTTGTTCTCTCGTCGACGGGAATGGGCGTGGGGGCCCC
GGAGCCGCCTTCCACGACGGTGATGGTAGCGGCGGGCCCCCTTTTTGAGG
ACTGCGTGGTGCTGCAGGCCCGGACGTATATTTGCGCCTGCCTTGGTTTA
GTTTAACACTTCCGGTGTGAAAAGCACCACGAGGATCGCTGAAGCCGCCT
CTTGCTGTACAGCAGTACACGACACCAATGTCATAGCGATGCGTGGATGG
TTTTTTTAGTCCTTGGCTTTCTCCTGGTCTGGGTTCTGCTGTAAGCCAGC
GGCTTTCACAGCCGTGCCTTGCGCGTGACGTACACATGTAGGAATGACTG
TGCCTTTTTAATCTTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1467:6487..15602+

>mRNA_L-elsbetiae_contig1467.3401.1 ID=mRNA_L-elsbetiae_contig1467.3401.1|Name=mRNA_L-elsbetiae_contig1467.3401.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1620bp|location=Sequence derived from alignment at L-elsbetiae_contig1467:6487..15602+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATAAGATGATAAGGTACTTTATTCCGGCGGATGGGGATGACCCGTCT
CACCCAAACGTGTTCCAGCTTCCGAGCGGGCTGGTGGGGAGCGGGTCGGT
ACGGTGCGGAGACGTGGAGAGGCACTTTCCGTTGCCCGGGCGGTTCCACT
TTCGGTTCAAGAAGAAGTTCAGGGACGCCTTCGGTACTTTATTCCGGCGG
ATGGGGATGACCCGTCTCACCCAAACGTGTTCCAGCTTCCGAGCGGGCTG
GTGGGGAGCGGGTCGGTACGGTGCGGAGACGTGGAGAGGCACTTTCCGTT
GCCCGGGCGGTTCCACTTTCGGTTCAAGAAGAAGTTCAGGGACGCCTTCG
TGTGGGTCGACATGCCGGACCCTGCCGCCACCGTGCCTGCCTGCGACGGG
GTTTTCACAGCCAAGATCACGCGCTTGTCGGACGGTAGGGGAGGCGTCGC
GGGAAACCCGGCTAGGGGGGGTAACGCGATGCCCGCGCCCCCGGCTGGCG
TGAGACGAGACGTCGGTGGAGGCGGAGGTGTGGGAGGAGGAGGAGGAGGA
GGAGGTGCTGTGTGGGTCGACATGCCGGACCCTGCCGCCACCGTGCCTGC
CTGCGACGGGGTTTTCACAGCCAAGATCACGCGCTTGTCGGACGGTAGGG
GAGGCGTCGCGGGAAACCCGGCTAGGGGGGGTAACGCGATGCCCGCGCCC
CCGGCTGGCGTGAGACGAGACGTCGGTGGAGGCGGAGGTGTGGGAGGAGG
AGGAGGAGGAGGAGGTGCTGGGCTCGGTGGAGACGACCTGCTCAACATGG
GCCACGGGACGGCATCGGGAGCTATCCCGGGGCCTGGGTTGATGGCTGGA
GGAGGCTCCCAGGGCTCGGTGGAGACGACCTGCTCAACATGGGCCACGGG
ACGGCATCGGGAGCTATCCCGGGGCCTGGGTTGATGGCTGGAGGAGGCTC
CCAGCCTGACGACCTGCTCGGCATGTTCGACAGCTCCCCATCCCACGGGG
CACCACCACAAACGGCGTCGGCGTCTGGGTCAGCGGCAGGGCCGCCAAGA
GCAGTGCGGTCGCCCCCTATGCACGCTGCCCCGATGTCCCACATGGCAGG
GGCAGGCGCCGGCGTCGGGGGCGGAGGCGGGGGCGGGTTCGGAGCGGGTT
CTCCCGGCATGGGCGCTCATCGACCAGCGCCTGACGACCTGCTCGGCATG
TTCGACAGCTCCCCATCCCACGGGGCACCACCACAAACGGCGTCGGCGTC
TGGGTCAGCGGCAGGGCCGCCAAGAGCAGTGCGGTCGCCCCCTATGCACG
CTGCCCCGATGTCCCACATGGCAGGGGCAGGCGCCGGCGTCGGGGGCGGA
GGCGGGGGCGGGTTCGGAGCGGGTTCTCCCGGCATGGGCGCTCATCGACC
AGCGCAATCCGGTTCGATGGGTGTTCAGTGGCAGCAGCAGCAACAACATC
CCCAGCACCAGCAATCCGGTTCGATGGGTGTTCAGTGGCAGCAGCAGCAA
CAACATCCCCAGCACCAGCAACAACAGCAATTCGCAAGGTTTCCTCCTCA
AGGGCGCGGCAACATGTAACAACAACAGCAATTCGCAAGGTTTCCTCCTC
AAGGGCGCGGCAACATGTAA
back to top