prot_L-elsbetiae_contig10294.338.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10294.338.1
Unique Nameprot_L-elsbetiae_contig10294.338.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length674
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10294.338.1 vs. uniprot
Match: D8LR92_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LR92_ECTSI)

HSP 1 Score: 377 bits (967), Expect = 7.270e-119
Identity = 357/627 (56.94%), Postives = 422/627 (67.30%), Query Frame = 0 
Query:   49 MDEDMEDIAKCMDDFGRDTITRVYLRYNELTFLQANLFGGLERVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENPDLQCVPTSSAQSVVVDNIVSEGCRCTPIGAVTCDAGVVCMPGEFGYTCVTPAPXXXXXXXXXXXXXXXXXXXXTIVKNPCLNPAGMDYRCNVNGTELNLDYCGIENEDMEDVKMCLDAFGRENTTTVSIRFNYLTSLPDNIFLGLGSTERLFLTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSL-DLRMNSELQCVPENVAETLDINELAPGGCGCSLLPTLMCDADQDCMPGEFGYTCTTPAPTPAPAVPGNNTCLDPASDAYKCNTSGTEIDFSYCGITDEDLEEVAACLDVFGRANMSHLHLRYNILTRIQADLFQGCGQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNLFQ-QHGNLTAPRQLQKLLLNMNSLSTLPAELFLELQLLEELDLRLNPGLQCVPSNTAVTVVVDDDFTPEICECSPAQAVTCAFDLICVPGEVGFTCGV 673
            MD D++D+ +C+D FGR T+TRVYL  N ++ +    F GL  +   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                          NPDLQCVP + A ++ VD+     C C P  AV C  GV C+PGE GY+C T APXXXXXXXXXXXXXXXXXXXX   KNPCL+PA   Y C+VNGTE++LDYCGI ++D+EDV+ CLD  GR + T + +RFNYLT++P+ +F GLG  E+L+L N                                   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   DLR+N ELQCVP + A+ ++  E++ G CGCSL P ++CD    C+PGE G+TC T APTPAP +PGNNTCLDPAS+ Y C   GTE+D +YCGITD++LEE+AAC+DVFGR  +  + L YN LT    DLF G   +    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    Q Q  N T P  LQ + +NMN LSTLPA LF  L +L  LDLRLNP LQCVP+      V  +  + ++CECSP QA  C    +CVPGE G+TCGV
Sbjct:    1 MDSDLDDVGRCIDVFGRGTMTRVYLSNNFISEMPVATFQGLSSLQWLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT------------------------SNPDLQCVPANDAITLEVDDTTVGTCGCAPAEAVMCGDGVFCIPGELGYSCGTTAPXXXXXXXXXXXXXXXXXXXXXXAKNPCLDPASEAYLCSVNGTEIHLDYCGITDDDLEDVETCLDVLGRGSMTALYVRFNYLTTIPEGLFDGLGHLEKLYLNNNGLSETLSAESFQALGKLQVLNLNGNSLTALPTDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLRLNPELQCVPASAADNVETTEISSGVCGCSLAPAVLCDVGLACVPGELGFTCATSAPTPAPVLPGNNTCLDPASEHYVCGMPGTELDLAYCGITDDNLEELAACMDVFGRDAVKEVRLGYNYLTTFSGDLFHGLTHVERIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPQDTNSTGPGHLQDIWMNMNLLSTLPAGLFDGLDMLTSLDLRLNPDLQCVPTTHDAVSVSAERLSSDVCECSPPQAAVCNAGQVCVPGEFGYTCGV 603
[Close]
BLAST of mRNA_L-elsbetiae_contig10294.338.1 vs. uniprot
Match: D7FSS1_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS1_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.550e-10
Identity = 53/167 (31.74%), Postives = 74/167 (44.31%), Query Frame = 0 
Query:  172 NPDLQCVPT-------SSAQSVVVDNIVSEG-CRCTPIGAV-TCDAGVVCMPGEFGYTCVTPAPXXXXXXXXXXXXXXXXXXXXTIVKNPCLNPAGMDYRCNVNGTELNLDYCGIENEDMEDVKMCLDAFGRENTTTVSIRFNYLTSLP---DNIFLGLGSTERLFL 326
            N  LQC+P+       + A+  + D   S G C C  +G    CD+   C PG  GY C                         + V+N C +P    Y C    T ++LD CGI +ED+ D++ C +  GR + TT+S+ +N LT LP   D IF G  S   L L
Sbjct:  305 NDGLQCLPSLFGLGLVNGAELFLPDGFESGGECACPSLGDDGACDSDESCTPGTDGYVC-------------------------SAVRNSCFDPDYDLYGCEPGSTLIDLDNCGIGDEDLGDLEECFNNVGRASVTTISMNYNSLTELPGGEDGIFAGFDSLNTLML 446
[Close]
BLAST of mRNA_L-elsbetiae_contig10294.338.1 vs. uniprot
Match: D7FSS0_ECTSI (Hypothetical leucine rich repeat protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS0_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 3.080e-7
Identity = 38/124 (30.65%), Postives = 56/124 (45.16%), Query Frame = 0 
Query:  206 CDAGVVCMPGEFGYTCVTPAPXXXXXXXXXXXXXXXXXXXXTIVKNPCLNPAGMDYRCNVNGTELNLDYCGIENEDMEDVKMCLDAFGRENTTTVSIRFNYLTSLP---DNIFLGLGSTERLFL 326
            C++   C PG  GY C T                          KN C +P    Y C    T+++LD CGI +ED+ED++ C +  GR + T +++  N LT LP   + +F G  S + L L
Sbjct:   18 CESDESCTPGTDGYICSTS-------------------------KNSCFDPEYDLYGCEPGSTQIDLDNCGIGDEDLEDLRECFENVGRASVTYIAMNSNSLTELPGGENGLFAGFESLKTLGL 116
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10294.338.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LR92_ECTSI7.270e-11956.94Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
D7FSS1_ECTSI1.550e-1031.74Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FSS0_ECTSI3.080e-730.65Hypothetical leucine rich repeat protein (Partial)... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 342..365
e-value: 8.5E-5
score: 31.9
coord: 532..555
e-value: 20.0
score: 10.8
coord: 509..531
e-value: 84.0
score: 5.7
coord: 366..389
e-value: 0.0054
score: 25.9
coord: 137..160
e-value: 1.8E-4
score: 30.9
coord: 556..579
e-value: 2.4
score: 17.2
coord: 69..88
e-value: 240.0
score: 2.0
coord: 298..317
e-value: 370.0
score: 0.4
coord: 113..136
e-value: 0.01
score: 25.0
coord: 587..609
e-value: 30.0
score: 9.4
coord: 318..341
e-value: 1.2
score: 18.2
coord: 89..112
e-value: 17.0
score: 11.4
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 556..575
e-value: 130.0
score: 5.2
coord: 586..605
e-value: 84.0
score: 6.7
coord: 137..156
e-value: 130.0
score: 5.1
coord: 610..630
e-value: 620.0
score: 0.0
coord: 89..108
e-value: 150.0
score: 4.8
coord: 366..385
e-value: 330.0
score: 2.1
coord: 298..313
e-value: 390.0
score: 1.6
coord: 113..132
e-value: 21.0
score: 11.2
coord: 390..410
e-value: 170.0
score: 4.2
NoneNo IPR availablePANTHERPTHR24366FAMILY NOT NAMEDcoord: 290..408
coord: 510..630
coord: 68..179
NoneNo IPR availablePANTHERPTHR24366:SF102LEUCINE RICH REPEAT CONTAINING 15coord: 290..408
coord: 510..630
coord: 68..179
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..673
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..22
score: 5.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.885
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 32..410
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 480..630
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 322..379
e-value: 1.1E-11
score: 44.3
coord: 510..569
e-value: 1.2E-9
score: 37.8
coord: 115..172
e-value: 2.6E-13
score: 49.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 23..192
e-value: 4.9E-27
score: 96.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 463..654
e-value: 2.2E-23
score: 83.8
coord: 250..456
e-value: 1.4E-31
score: 110.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10294contigL-elsbetiae_contig10294:709..4665 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10294.338.1mRNA_L-elsbetiae_contig10294.338.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10294 672..4747 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10294.338.1 ID=prot_L-elsbetiae_contig10294.338.1|Name=mRNA_L-elsbetiae_contig10294.338.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=674bp
MTIVRGLLLLLLPILATGISSCLDPASDVYKCSNSTSGTQINLDDCEIMD
EDMEDIAKCMDDFGRDTITRVYLRYNELTFLQANLFGGLERVERIYASYN
SLAALPVAVFNGLERLQWLGLDSNSLSALPERIFLGLGQLDTLMLSRNSL
TTLPSEVFSGLGALQELLLTENPDLQCVPTSSAQSVVVDNIVSEGCRCTP
IGAVTCDAGVVCMPGEFGYTCVTPAPTPAPMPMPAAAPSPAPTAMPTIVK
NPCLNPAGMDYRCNVNGTELNLDYCGIENEDMEDVKMCLDAFGRENTTTV
SIRFNYLTSLPDNIFLGLGSTERLFLTNNGLSQLPNDIFQSLGKLEVLDL
NGNSLTYLTAGVFQGLGQLQHLRINFSQLTTLPAGLFQGLAGLKSLDLRM
NSELQCVPENVAETLDINELAPGGCGCSLLPTLMCDADQDCMPGEFGYTC
TTPAPTPAPAVPGNNTCLDPASDAYKCNTSGTEIDFSYCGITDEDLEEVA
ACLDVFGRANMSHLHLRYNILTRIQADLFQGCGQLEHISLNDNGLTTLPL
EVLEGVGELKVLNLNRNSLIAFPGNLFQQHGNLTAPRQLQKLLLNMNSLS
TLPAELFLELQLLEELDLRLNPGLQCVPSNTAVTVVVDDDFTPEICECSP
AQAVTCAFDLICVPGEVGFTCGV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf