mRNA_L-elsbetiae_contig1461.3367.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1461.3367.1
Unique NamemRNA_L-elsbetiae_contig1461.3367.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1461.3367.1 vs. uniprot
Match: D8LRR4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRR4_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 5.290e-30
Identity = 55/60 (91.67%), Postives = 59/60 (98.33%), Query Frame = 1
Query:    1 RHLGQSSFPLSEQEYLEHLQALAELLMEWDRVEQFKTSLAETKKRPQSYFGYAVAIPLDL 180
            +HLGQSSFPLSEQEYLEHLQALAELLMEWDRV+QFK SLA+TKKRPQSYFGYAVA+PLDL
Sbjct:  149 KHLGQSSFPLSEQEYLEHLQALAELLMEWDRVDQFKRSLADTKKRPQSYFGYAVALPLDL 208          
BLAST of mRNA_L-elsbetiae_contig1461.3367.1 vs. uniprot
Match: L1IPD9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IPD9_GUITC)

HSP 1 Score: 81.6 bits (200), Expect = 9.810e-18
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   10 GQSSFPLSEQEYLEHLQALAELLMEWDRVEQFKTSLAETKKRPQSYFGYAVAIPLDL 180
            GQ SFPL+E EYLEHLQ LAEL ++WDRV+  K  +A+ +KRP  YFGYAVA+PLDL
Sbjct:  135 GQQSFPLTETEYLEHLQFLAELCVKWDRVDLLKEEIAKCRKRPNGYFGYAVALPLDL 191          
BLAST of mRNA_L-elsbetiae_contig1461.3367.1 vs. uniprot
Match: A0A835ZDV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDV8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.820e-16
Identity = 35/60 (58.33%), Postives = 49/60 (81.67%), Query Frame = 1
Query:    1 RHLGQSSFPLSEQEYLEHLQALAELLMEWDRVEQFKTSLAETKKRPQSYFGYAVAIPLDL 180
            ++LGQ SF L+E+EYLEHL+A+A+LL +WDRV+     +   +KRPQ+YFGYAV++PLDL
Sbjct:   60 KYLGQQSFHLNEREYLEHLEAIAQLLHKWDRVDHVIDLIKTCRKRPQAYFGYAVSLPLDL 119          
BLAST of mRNA_L-elsbetiae_contig1461.3367.1 vs. uniprot
Match: A0A7S0XWG0_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XWG0_HEMAN)

HSP 1 Score: 78.6 bits (192), Expect = 3.330e-16
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    1 RHLGQSSFPLSEQEYLEHLQALAELLMEWDRVEQFKTSLAETKKRPQSYFGYAVAIPLDL 180
            +H GQ SF L+EQEYLEHLQ +AELL +W+RV+  K  +A+ KKRP  YFGYAV I LDL
Sbjct:  164 KHYGQQSFHLTEQEYLEHLQFIAELLNKWERVDHVKKLIADCKKRPAGYFGYAVPIALDL 223          
BLAST of mRNA_L-elsbetiae_contig1461.3367.1 vs. uniprot
Match: A0A7S0YUK4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YUK4_9CRYP)

HSP 1 Score: 72.8 bits (177), Expect = 2.960e-14
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 RHLGQSSFPLSEQEYLEHLQALAELLMEWDRVEQFKTSLAETKKRPQSYFGYAVAIPLDL 180
            ++ GQ SF L+EQEYLEHLQ +AEL+ +W+RVE  K  + + +KRP  YFGYAV I LDL
Sbjct:  141 KYYGQQSFHLTEQEYLEHLQFIAELINKWERVEHVKKVIDDCQKRPAGYFGYAVPIALDL 200          
BLAST of mRNA_L-elsbetiae_contig1461.3367.1 vs. uniprot
Match: W7TIL0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIL0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.320e-12
Identity = 29/55 (52.73%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    1 RHLGQSSFPLSEQEYLEHLQALAELLMEWDRVEQFKTSLAETKKRPQSYFGYAVA 165
            ++LGQ SFPL+E++YLEHL+ ++  L++W +V  FK  LAE +K+P +YFGYAV+
Sbjct:  118 KYLGQQSFPLNERQYLEHLEYISRKLVQWGKVADFKKDLAECRKKPNAYFGYAVS 172          
BLAST of mRNA_L-elsbetiae_contig1461.3367.1 vs. uniprot
Match: A0A0F6U1J0_MICAE (Uncharacterized protein n=69 Tax=Chroococcales TaxID=1118 RepID=A0A0F6U1J0_MICAE)

HSP 1 Score: 64.3 bits (155), Expect = 6.270e-12
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 RHLGQSSFPLSEQEYLEHLQALAELLMEWDRVEQFKTSLAETKKRPQSYFGYAVAIPLDL 180
            ++L Q+SFPLSE EYLEHL A+A  L EW  V QF+  + ET++RP+   G AV++PLDL
Sbjct:   36 KYLEQASFPLSESEYLEHLNAIANYLHEWGGVSQFQAFIRETRERPR--LGKAVSLPLDL 93          
BLAST of mRNA_L-elsbetiae_contig1461.3367.1 vs. uniprot
Match: A0A7C3KCT8_9CYAN (DUF3067 family protein n=1 Tax=Oscillatoriales cyanobacterium SpSt-418 TaxID=2282169 RepID=A0A7C3KCT8_9CYAN)

HSP 1 Score: 63.2 bits (152), Expect = 1.780e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 RHLGQSSFPLSEQEYLEHLQALAELLMEWDRVEQFKTSLAETKKRPQSYFGYAVAIPLDL 180
            R+L Q SFPLSE EY+EHL A+A  L  W  VEQ +  ++ETK+RP+   G AVAIP+DL
Sbjct:   36 RYLEQRSFPLSEAEYIEHLNAIASYLEAWGSVEQVQQFVSETKERPR--LGKAVAIPIDL 93          
BLAST of mRNA_L-elsbetiae_contig1461.3367.1 vs. uniprot
Match: K9XQ33_STAC7 (Uncharacterized protein n=2 Tax=Stanieria TaxID=102115 RepID=K9XQ33_STAC7)

HSP 1 Score: 62.4 bits (150), Expect = 3.580e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 RHLGQSSFPLSEQEYLEHLQALAELLMEWDRVEQFKTSLAETKKRPQSYFGYAVAIPLDL 180
            ++L Q+SFPLSEQ YLEHL+A+A  L  W  VEQ KT +  T+ RP+   G AV+IPLDL
Sbjct:   36 KYLEQASFPLSEQAYLEHLEAVASYLNAWGGVEQVKTFINHTRDRPR--LGKAVSIPLDL 93          
BLAST of mRNA_L-elsbetiae_contig1461.3367.1 vs. uniprot
Match: K9SQY1_9SYNE (Uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7502 TaxID=1173263 RepID=K9SQY1_9SYNE)

HSP 1 Score: 62.4 bits (150), Expect = 3.760e-11
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 RHLGQSSFPLSEQEYLEHLQALAELLMEWDRVEQFKTSLAETKKRPQSYFGYAVAIPLDL 180
            R+L Q SFPLSE EYLEHL +LA  L EW  +EQ K  +A TK RP+   G AV IPL+L
Sbjct:   36 RYLEQQSFPLSEAEYLEHLDSLATHLHEWGAIEQVKNFIATTKLRPR--LGKAVGIPLEL 93          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1461.3367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRR4_ECTSI5.290e-3091.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
L1IPD9_GUITC9.810e-1866.67Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A835ZDV8_9STRA1.820e-1658.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0XWG0_HEMAN3.330e-1663.33Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S0YUK4_9CRYP2.960e-1458.33Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
W7TIL0_9STRA1.320e-1252.73Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A0F6U1J0_MICAE6.270e-1255.00Uncharacterized protein n=69 Tax=Chroococcales Tax... [more]
A0A7C3KCT8_9CYAN1.780e-1156.67DUF3067 family protein n=1 Tax=Oscillatoriales cya... [more]
K9XQ33_STAC73.580e-1156.67Uncharacterized protein n=2 Tax=Stanieria TaxID=10... [more]
K9SQY1_9SYNE3.760e-1158.33Uncharacterized protein n=1 Tax=Synechococcus sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1461contigL-elsbetiae_contig1461:9063..9242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue6.4e-24
Seed eggNOG ortholog2880.D8LRR4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF3067)
EggNOG OGs2AH3C@1,2S9WY@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionProtein of unknown function DUF3067
Ec32 orthologEc-08_002130.1
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.4878228-CDS-L-elsbetiae_contig1461:9062..92421622815587.4878228-CDS-L-elsbetiae_contig1461:9062..9242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1461 9063..9242 +
1691682975.9281619-CDS-L-elsbetiae_contig1461:9062..92421691682975.9281619-CDS-L-elsbetiae_contig1461:9062..9242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1461 9063..9242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1461.3367.1prot_L-elsbetiae_contig1461.3367.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1461 9063..9242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1461.3367.1

>prot_L-elsbetiae_contig1461.3367.1 ID=prot_L-elsbetiae_contig1461.3367.1|Name=mRNA_L-elsbetiae_contig1461.3367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
RHLGQSSFPLSEQEYLEHLQALAELLMEWDRVEQFKTSLAETKKRPQSYF
GYAVAIPLDL
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mRNA from alignment at L-elsbetiae_contig1461:9063..9242+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1461.3367.1 ID=mRNA_L-elsbetiae_contig1461.3367.1|Name=mRNA_L-elsbetiae_contig1461.3367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=180bp|location=Sequence derived from alignment at L-elsbetiae_contig1461:9063..9242+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCACTTGGGGCAGAGCAGCTTCCCCCTTTCCGAGCAAGAGTACCTCGA GCACCTCCAAGCCCTTGCAGAGCTTCTCATGGAGTGGGACCGCGTGGAGC AGTTCAAGACGTCACTTGCCGAGACCAAGAAACGACCGCAAAGCTATTTC GGCTACGCAGTAGCCATCCCGCTCGACCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1461:9063..9242+

>mRNA_L-elsbetiae_contig1461.3367.1 ID=mRNA_L-elsbetiae_contig1461.3367.1|Name=mRNA_L-elsbetiae_contig1461.3367.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig1461:9063..9242+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCACTTGGGGCAGAGCAGCTTCCCCCTTTCCGAGCAAGAGTACCTCGA
GCACCTCCAAGCCCTTGCAGAGCTTCTCATGGAGTGGGACCGCGTGGAGC
AGTTCAAGACGTCACTTGCCGAGACCAAGAAACGACCGCAAAGCTATTTC
GGCTACGCAGTAGCCATCCCGCTCGACCTCAGGCACTTGGGGCAGAGCAG
CTTCCCCCTTTCCGAGCAAGAGTACCTCGAGCACCTCCAAGCCCTTGCAG
AGCTTCTCATGGAGTGGGACCGCGTGGAGCAGTTCAAGACGTCACTTGCC
GAGACCAAGAAACGACCGCAAAGCTATTTCGGCTACGCAGTAGCCATCCC
GCTCGACCTC
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