mRNA_L-elsbetiae_contig14607.3363.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14607.3363.1
Unique NamemRNA_L-elsbetiae_contig14607.3363.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14607.3363.1 vs. uniprot
Match: D8LH67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH67_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.130e-13
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 2 
Query:  359 DLQTSARATAVLPPDMEEAPEAHLMEETPGTQLVETSRQRVQRGRRTE 502
            D++TSARA A+LP DMEEAPEAHLME TPGTQLVE +RQRVQRGRRTE
Sbjct:   52 DIETSARAEAMLPSDMEEAPEAHLMEGTPGTQLVEATRQRVQRGRRTE 99
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14607.3363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH67_ECTSI1.130e-1383.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14607contigL-elsbetiae_contig14607:911..1874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size713
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14607.3363.1prot_L-elsbetiae_contig14607.3363.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14607 1170..1816 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.1706338-UTR-L-elsbetiae_contig14607:910..11691622815587.1706338-UTR-L-elsbetiae_contig14607:910..1169Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14607 911..1169 +
1691682975.7822871-UTR-L-elsbetiae_contig14607:910..11691691682975.7822871-UTR-L-elsbetiae_contig14607:910..1169Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14607 911..1169 +
1622815587.2171974-UTR-L-elsbetiae_contig14607:1816..18741622815587.2171974-UTR-L-elsbetiae_contig14607:1816..1874Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14607 1817..1874 +
1691682975.8176312-UTR-L-elsbetiae_contig14607:1816..18741691682975.8176312-UTR-L-elsbetiae_contig14607:1816..1874Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14607 1817..1874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.1823337-CDS-L-elsbetiae_contig14607:1169..14121622815587.1823337-CDS-L-elsbetiae_contig14607:1169..1412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14607 1170..1412 +
1691682975.7949927-CDS-L-elsbetiae_contig14607:1169..14121691682975.7949927-CDS-L-elsbetiae_contig14607:1169..1412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14607 1170..1412 +
1622815587.1920555-CDS-L-elsbetiae_contig14607:1527..16551622815587.1920555-CDS-L-elsbetiae_contig14607:1527..1655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14607 1528..1655 +
1691682975.8028224-CDS-L-elsbetiae_contig14607:1527..16551691682975.8028224-CDS-L-elsbetiae_contig14607:1527..1655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14607 1528..1655 +
1622815587.2023237-CDS-L-elsbetiae_contig14607:1791..18161622815587.2023237-CDS-L-elsbetiae_contig14607:1791..1816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14607 1792..1816 +
1691682975.8102653-CDS-L-elsbetiae_contig14607:1791..18161691682975.8102653-CDS-L-elsbetiae_contig14607:1791..1816Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14607 1792..1816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14607.3363.1

>prot_L-elsbetiae_contig14607.3363.1 ID=prot_L-elsbetiae_contig14607.3363.1|Name=mRNA_L-elsbetiae_contig14607.3363.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MCGCLPNRVVGRWLCAATTTSKMLVCYSTMVLFDLQTSARATAVLPPDME
EAPEAHLMEETPGTQLVETSRQRVQRGRRTETPASRAAVVPPEMAAAPEA
HLMDENPGKQLLKATRPRVQRIARRQQGEQR*
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mRNA from alignment at L-elsbetiae_contig14607:911..1874+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14607.3363.1 ID=mRNA_L-elsbetiae_contig14607.3363.1|Name=mRNA_L-elsbetiae_contig14607.3363.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=964bp|location=Sequence derived from alignment at L-elsbetiae_contig14607:911..1874+ (Laminarionema elsbetiae ELsaHSoW15)
CACCCCCAGCACGCTGGCACTGTTTGAAGTGGGAGTGCAGCAGTTCCGAC
CCCCGCTGTAGAGGAGCAGCAGGAACTTGACGAGGAGAGCAATGTGTGGT
ATGCGCCTGCGGAGACCAGACCTGTCCACAATTTGTCCATCAAAATTTTG
CATGCAGACAGCACAAGTACCTATTGCATTCGATCACTTGATGCTGCACC
GGTCGACTTGCATCCCGTGGAAATATGAGACTACCCCCGCCTACGACAAG
TGATCCCCCATGTGTGGTTGTCTACCGAATCGTGTCGTTGGGAGGTGGTT
GTGTGCAGCGACCACCACGTCTAAAATGCTGGTTTGTTATTCAACCATGG
TGCTGTTTGATCTACAGACGTCGGCAAGAGCGACAGCGGTGCTTCCCCCG
GATATGGAGGAGGCACCGGAGGCGCATCTCATGGAGGAAACCCCGGGAAC
GCAGCTGGTGGAGACGAGCCGGCAAAGAGTTCAAAGGGGCAGGAGAACCG
AGGTATGGATTGCCTGGAGTGAGCGTGTAAGCATGTGTGTACGTGTCCGG
CATTGTGTGTTACATTTGCTCGTGCCGCGCGTGTGTATTGTTTGTGCACG
ATGCTGTTGATCGACAGACGCCAGCAAGCAGGGCAGCGGTAGTTCCCCCG
GAGATGGCGGCGGCACCGGAGGCGCATCTCATGGATGAAAACCCGGGAAA
GCAGCTGTTGAAGGCGACTAGGCCAAGAGTTCAAAGGATTGCCCGGTGTG
AACGCATGAGCATGTGTGTGCTGCGTGTCCAAATTGTGCGTCATATGTTT
GCTCGTGCCGCCCGTGTGTAGCGACGCCATGGTCCGTCTAAAATTTGTGT
TTTGTTTGCGCACGATGCTGTTGATCGACAGACGCCAGCAAGGAGAGCAG
CGGTAGTTCCCCCGGAGATGGCGGAGGCACCGGGGGCGCATCGCATGGAG
GAAAGCCGGGAACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14607:911..1874+

>mRNA_L-elsbetiae_contig14607.3363.1 ID=mRNA_L-elsbetiae_contig14607.3363.1|Name=mRNA_L-elsbetiae_contig14607.3363.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig14607:911..1874+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGGTTGTCTACCGAATCGTGTCGTTGGGAGGTGGTTGTGTGCAGC
GACCACCACGTCTAAAATGCTGGTTTGTTATTCAACCATGGTGCTGTTTG
ATCTACAGACGTCGGCAAGAGCGACAGCGGTGCTTCCCCCGGATATGGAG
GAGGCACCGGAGGCGCATCTCATGGAGGAAACCCCGGGAACGCAGCTGGT
GGAGACGAGCCGGCAAAGAGTTCAAAGGGGCAGGAGAACCGAGATGTGTG
GTTGTCTACCGAATCGTGTCGTTGGGAGGTGGTTGTGTGCAGCGACCACC
ACGTCTAAAATGCTGGTTTGTTATTCAACCATGGTGCTGTTTGATCTACA
GACGTCGGCAAGAGCGACAGCGGTGCTTCCCCCGGATATGGAGGAGGCAC
CGGAGGCGCATCTCATGGAGGAAACCCCGGGAACGCAGCTGGTGGAGACG
AGCCGGCAAAGAGTTCAAAGGGGCAGGAGAACCGAGACGCCAGCAAGCAG
GGCAGCGGTAGTTCCCCCGGAGATGGCGGCGGCACCGGAGGCGCATCTCA
TGGATGAAAACCCGGGAAAGCAGCTGTTGAAGGCGACTAGGCCAAGAGTT
CAAAGGATTGCCCGACGCCAGCAAGCAGGGCAGCGGTAGTTCCCCCGGAG
ATGGCGGCGGCACCGGAGGCGCATCTCATGGATGAAAACCCGGGAAAGCA
GCTGTTGAAGGCGACTAGGCCAAGAGTTCAAAGGATTGCCCGACGCCAGC
AAGGAGAGCAGCGGTAGACGCCAGCAAGGAGAGCAGCGGTAG
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