mRNA_L-elsbetiae_contig14604.3362.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14604.3362.1
Unique NamemRNA_L-elsbetiae_contig14604.3362.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14604.3362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14604contigL-elsbetiae_contig14604:2440..2833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size395
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.1148434-UTR-L-elsbetiae_contig14604:2439..24671622815587.1148434-UTR-L-elsbetiae_contig14604:2439..2467Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14604 2440..2467 +
1691682975.7601538-UTR-L-elsbetiae_contig14604:2439..24671691682975.7601538-UTR-L-elsbetiae_contig14604:2439..2467Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14604 2440..2467 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.1259253-CDS-L-elsbetiae_contig14604:2467..28331622815587.1259253-CDS-L-elsbetiae_contig14604:2467..2833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14604 2468..2833 +
1691682975.772097-CDS-L-elsbetiae_contig14604:2467..28331691682975.772097-CDS-L-elsbetiae_contig14604:2467..2833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14604 2468..2833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14604.3362.1prot_L-elsbetiae_contig14604.3362.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14604 2468..2833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14604.3362.1

>prot_L-elsbetiae_contig14604.3362.1 ID=prot_L-elsbetiae_contig14604.3362.1|Name=mRNA_L-elsbetiae_contig14604.3362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
MCVTPAAAAEKKRGRSPQRELGAAYHNRKLDGSGGWFLSARPRLQYFCIT
VCCCCDDDAKKTPPLRVVRRSTHLRTPPPTKNGGEPCGLCDFWEFTKDTH
FSVIILGFPVFFRLNFLVEQFP
back to top

mRNA from alignment at L-elsbetiae_contig14604:2440..2833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14604.3362.1 ID=mRNA_L-elsbetiae_contig14604.3362.1|Name=mRNA_L-elsbetiae_contig14604.3362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=394bp|location=Sequence derived from alignment at L-elsbetiae_contig14604:2440..2833+ (Laminarionema elsbetiae ELsaHSoW15)
GCATGGTGTACTAGTCTCGCTGTATCAGATGTGCGTGACACCTGCGGCAG
CAGCGGAAAAAAAAAGAGGACGGAGTCCGCAGCGAGAATTGGGGGCGGCG
TATCACAACCGAAAGTTGGATGGGTCGGGGGGGTGGTTTCTTTCCGCGCG
CCCCAGACTGCAGTATTTTTGCATCACTGTTTGTTGCTGTTGTGATGATG
ATGCGAAAAAAACTCCGCCGCTCCGGGTGGTACGGAGAAGCACACACCTC
CGCACTCCTCCTCCTACAAAAAACGGAGGAGAGCCCTGTGGGCTGTGTGA
CTTTTGGGAATTCACCAAAGATACCCACTTCTCCGTTATAATTCTGGGTT
TCCCCGTCTTTTTCCGGTTGAATTTTCTGGTTGAGCAATTTCCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14604:2440..2833+

>mRNA_L-elsbetiae_contig14604.3362.1 ID=mRNA_L-elsbetiae_contig14604.3362.1|Name=mRNA_L-elsbetiae_contig14604.3362.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig14604:2440..2833+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCGTGACACCTGCGGCAGCAGCGGAAAAAAAAAGAGGACGGAGTCC
GCAGCGAGAATTGGGGGCGGCGTATCACAACCGAAAGTTGGATGGGTCGG
GGGGGTGGTTTCTTTCCGCGCGCCCCAGACTGCAGTATTTTTGCATCACT
GTTTGTTGCTGTTGTGATGATGATGCGAAAAAAACTCCGCCGCTCCGGGT
GGTACGGAGAAGCACACACCTCCGCACTCCTCCTCCTACAAAAAACGGAG
GAGAGCCCTGTGGGCTGTGTGACTTTTGGGAATTCACCAAAGATACCCAC
TTCTCCGTTATAATTCTGGGTTTCCCCGTCTTTTTCCGGTTGAATTTTCT
GGTTGAGCAATTTCCGATGTGCGTGACACCTGCGGCAGCAGCGGAAAAAA
AAAGAGGACGGAGTCCGCAGCGAGAATTGGGGGCGGCGTATCACAACCGA
AAGTTGGATGGGTCGGGGGGGTGGTTTCTTTCCGCGCGCCCCAGACTGCA
GTATTTTTGCATCACTGTTTGTTGCTGTTGTGATGATGATGCGAAAAAAA
CTCCGCCGCTCCGGGTGGTACGGAGAAGCACACACCTCCGCACTCCTCCT
CCTACAAAAAACGGAGGAGAGCCCTGTGGGCTGTGTGACTTTTGGGAATT
CACCAAAGATACCCACTTCTCCGTTATAATTCTGGGTTTCCCCGTCTTTT
TCCGGTTGAATTTTCTGGTTGAGCAATTTCCG
back to top