mRNA_L-elsbetiae_contig1458.3343.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1458.3343.1
Unique NamemRNA_L-elsbetiae_contig1458.3343.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1458.3343.1 vs. uniprot
Match: D7FV43_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV43_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.290e-59
Identity = 87/96 (90.62%), Postives = 93/96 (96.88%), Query Frame = 1 
Query:    1 MGVTVETTKAGDKRTYPKRGDAVTMDYTGTLEDGTVFDSSIRKGRRFNCTIGIGQVIKGWDEGVPQMSLGEKAILRCTSDYAYGPDGAGGVIPPNA 288
            MGVTVETTK GDK+TYPK GD+VTMDYTGTLEDGTVFDSSIRKGRRFNC IG+GQVI+GWDEGVPQMSLGEKAIL+CTSDYAYGP+GAGGVIPPNA
Sbjct:    1 MGVTVETTKEGDKQTYPKPGDSVTMDYTGTLEDGTVFDSSIRKGRRFNCKIGVGQVIQGWDEGVPQMSLGEKAILKCTSDYAYGPEGAGGVIPPNA 96
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BLAST of mRNA_L-elsbetiae_contig1458.3343.1 vs. uniprot
Match: A0A835YRR7_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRR7_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.820e-42
Identity = 71/97 (73.20%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    1 MGVTVETTKAGDKRTYPKRGDAVTMDYTGTL-EDGTVFDSSIRKGRRFNCTIGIGQVIKGWDEGVPQMSLGEKAILRCTSDYAYGPDGAGGVIPPNA 288
            MGVT E  + GD++T+PKRGD +TM YTGTL  +G VFDSSIRKGR F  TIG+G+VIKGWDEGV QMSLGEKAIL  TSDY YG  GAGGVIPPNA
Sbjct:    1 MGVTKEVLRTGDEQTFPKRGDELTMHYTGTLASNGQVFDSSIRKGRPFKFTIGVGRVIKGWDEGVAQMSLGEKAILHITSDYGYGAAGAGGVIPPNA 97
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BLAST of mRNA_L-elsbetiae_contig1458.3343.1 vs. uniprot
Match: A0A1X2IGS3_9FUNG (Peptidylprolyl isomerase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IGS3_9FUNG)

HSP 1 Score: 135 bits (340), Expect = 2.150e-39
Identity = 62/96 (64.58%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 MGVTVETTKAGDKRTYPKRGDAVTMDYTGTLEDGTVFDSSIRKGRRFNCTIGIGQVIKGWDEGVPQMSLGEKAILRCTSDYAYGPDGAGGVIPPNA 288
            MGV VE+ +AGD + YPK+GD VT+ Y GTL+DGT FD+S  +G  F C IG+GQV+KGWDEGVPQ+S+GE+A L  T+DYAYGP G  GVIPPNA
Sbjct:    1 MGVKVESYQAGDGQNYPKKGDTVTIHYIGTLQDGTKFDASRDRGAPFKCVIGVGQVVKGWDEGVPQLSIGERAKLTATADYAYGPRGIPGVIPPNA 96
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BLAST of mRNA_L-elsbetiae_contig1458.3343.1 vs. uniprot
Match: A0A7S4V7C6_9DINO (Peptidylprolyl isomerase n=3 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V7C6_9DINO)

HSP 1 Score: 135 bits (340), Expect = 5.490e-39
Identity = 67/97 (69.07%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 MGVTVETTKAGDKRTYPKRGDAVTMDYTGTL-EDGTVFDSSIRKGRRFNCTIGIGQVIKGWDEGVPQMSLGEKAILRCTSDYAYGPDGAGGVIPPNA 288
            MGV  E  KAGD   +PK+GD VTM YTGTL +DG  FDSS+ +G+ F   IG+GQVI+GWDEGVPQMSLGEKAILR TSD+ YG  GAGGVIPPNA
Sbjct:   31 MGVEKEILKAGDNTNFPKKGDKVTMHYTGTLTKDGKKFDSSVDRGQPFQTQIGVGQVIQGWDEGVPQMSLGEKAILRMTSDFGYGAAGAGGVIPPNA 127
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BLAST of mRNA_L-elsbetiae_contig1458.3343.1 vs. uniprot
Match: A0A7S4DFR9_9EUKA (Peptidylprolyl isomerase n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DFR9_9EUKA)

HSP 1 Score: 134 bits (338), Expect = 5.860e-39
Identity = 65/96 (67.71%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 MGVTVETTKAGDKRTYPKRGDAVTMDYTGTLEDGTVFDSSIRKGRRFNCTIGIGQVIKGWDEGVPQMSLGEKAILRCTSDYAYGPDGAGGVIPPNA 288
            MGV V+T KAGD +T+PK+GD +TM Y GTL+DGT FDSS  +G+ F  TIG+GQVI+GWDEGV +MSLGEKA L  TSDY YG  GAG VIPPNA
Sbjct:    7 MGVEVKTIKAGDGKTFPKQGDLLTMHYVGTLKDGTKFDSSRDRGKPFQFTIGVGQVIRGWDEGVMKMSLGEKAKLEITSDYGYGSSGAGDVIPPNA 102
[Close]
BLAST of mRNA_L-elsbetiae_contig1458.3343.1 vs. uniprot
Match: A0A8H7USB0_9FUNG (Peptidylprolyl isomerase n=2 Tax=Mucoraceae TaxID=34489 RepID=A0A8H7USB0_9FUNG)

HSP 1 Score: 134 bits (336), Expect = 8.730e-39
Identity = 63/96 (65.62%), Postives = 74/96 (77.08%), Query Frame = 1 
Query:    1 MGVTVETTKAGDKRTYPKRGDAVTMDYTGTLEDGTVFDSSIRKGRRFNCTIGIGQVIKGWDEGVPQMSLGEKAILRCTSDYAYGPDGAGGVIPPNA 288
            MGVTVET   GD + +PK+GD V+M Y GTLE+G  FDSS  +G  FNCTIG+GQVIKGWDEGVPQ+S+G+KA L CT DYAYG  G  G+IPP A
Sbjct:    1 MGVTVETIAPGDGKNFPKKGDRVSMHYVGTLENGDKFDSSRDRGSPFNCTIGVGQVIKGWDEGVPQLSVGQKAKLTCTHDYAYGERGYPGLIPPRA 96
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BLAST of mRNA_L-elsbetiae_contig1458.3343.1 vs. uniprot
Match: A0A7S3LEC3_9STRA (Peptidylprolyl isomerase n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEC3_9STRA)

HSP 1 Score: 134 bits (337), Expect = 9.680e-39
Identity = 68/97 (70.10%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 MGVTVETTKAGDKRTYPKRGDAVTMDYTGTL-EDGTVFDSSIRKGRRFNCTIGIGQVIKGWDEGVPQMSLGEKAILRCTSDYAYGPDGAGGVIPPNA 288
            MGV  ET K GD  T+P++GD ++M Y GTL  DGT FDSS RKGR F   IGIGQVIKGWDEGV QMSLGEKA L+ TSDY YG  GAGGVIPPNA
Sbjct:    1 MGVIKETIKPGDGATFPQKGDKLSMTYVGTLASDGTQFDSSFRKGRPFQFVIGIGQVIKGWDEGVAQMSLGEKATLKITSDYGYGARGAGGVIPPNA 97
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BLAST of mRNA_L-elsbetiae_contig1458.3343.1 vs. uniprot
Match: A0A8H7PNE1_MORIS (Peptidylprolyl isomerase n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PNE1_MORIS)

HSP 1 Score: 134 bits (336), Expect = 9.850e-39
Identity = 62/96 (64.58%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 MGVTVETTKAGDKRTYPKRGDAVTMDYTGTLEDGTVFDSSIRKGRRFNCTIGIGQVIKGWDEGVPQMSLGEKAILRCTSDYAYGPDGAGGVIPPNA 288
            MGVTV+T  AGD + +PK+GD VT+ Y GTLEDGT FDSS  +   F+C IG+GQVI+GWDEGVPQ+SLG++A L  T DYAYGP G  G+IPPNA
Sbjct:    1 MGVTVDTISAGDGQNFPKKGDRVTIHYVGTLEDGTKFDSSRDRSDAFSCVIGVGQVIRGWDEGVPQLSLGQRAKLTATGDYAYGPRGFPGLIPPNA 96
[Close]
BLAST of mRNA_L-elsbetiae_contig1458.3343.1 vs. uniprot
Match: A0A7S0AZK4_9STRA (Peptidylprolyl isomerase n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AZK4_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.460e-38
Identity = 65/97 (67.01%), Postives = 76/97 (78.35%), Query Frame = 1 
Query:    1 MGVTVETTKAGDKRTYPKRGDAVTMDYTGTL-EDGTVFDSSIRKGRRFNCTIGIGQVIKGWDEGVPQMSLGEKAILRCTSDYAYGPDGAGGVIPPNA 288
            MGV +E  KAGD +TYP++GD +TM YTGTL  DG  FDSS+ KGR F   IGIGQVI+GWDEGV +MSLGEK++L  +SDY YG  GAGGVIPPNA
Sbjct:   15 MGVEIEVLKAGDGQTYPQKGDRLTMHYTGTLASDGKQFDSSVAKGRPFQFVIGIGQVIRGWDEGVTKMSLGEKSVLTISSDYGYGAAGAGGVIPPNA 111
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BLAST of mRNA_L-elsbetiae_contig1458.3343.1 vs. uniprot
Match: FKBP1_RHIO9 (FK506-binding protein 1 n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=FKBP1_RHIO9)

HSP 1 Score: 132 bits (332), Expect = 3.550e-38
Identity = 63/96 (65.62%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 MGVTVETTKAGDKRTYPKRGDAVTMDYTGTLEDGTVFDSSIRKGRRFNCTIGIGQVIKGWDEGVPQMSLGEKAILRCTSDYAYGPDGAGGVIPPNA 288
            MGVTVET + GD + +PK+GD VTM YTGTL++G+VFDSS+R+   F   IG+G+VIKGWDEGV Q+SLG+KA L CT DYAYGP G   VIPPNA
Sbjct:    1 MGVTVETIQPGDGKNFPKKGDTVTMHYTGTLQNGSVFDSSVRRNEPFVTQIGVGRVIKGWDEGVLQLSLGQKANLICTPDYAYGPRGFPPVIPPNA 96
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1458.3343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV43_ECTSI1.290e-5990.63Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YRR7_9STRA2.820e-4273.20Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A1X2IGS3_9FUNG2.150e-3964.58Peptidylprolyl isomerase n=1 Tax=Absidia repens Ta... [more]
A0A7S4V7C6_9DINO5.490e-3969.07Peptidylprolyl isomerase n=3 Tax=Alexandrium monil... [more]
A0A7S4DFR9_9EUKA5.860e-3967.71Peptidylprolyl isomerase n=1 Tax=Lotharella globos... [more]
A0A8H7USB0_9FUNG8.730e-3965.63Peptidylprolyl isomerase n=2 Tax=Mucoraceae TaxID=... [more]
A0A7S3LEC3_9STRA9.680e-3970.10Peptidylprolyl isomerase n=2 Tax=Amphora coffeifor... [more]
A0A8H7PNE1_MORIS9.850e-3964.58Peptidylprolyl isomerase n=1 Tax=Mortierella isabe... [more]
A0A7S0AZK4_9STRA3.460e-3867.01Peptidylprolyl isomerase n=1 Tax=Minutocellus poly... [more]
FKBP1_RHIO93.550e-3865.63FK506-binding protein 1 n=1 Tax=Rhizopus delemar (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1458contigL-elsbetiae_contig1458:2291..3145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.3
Seed ortholog evalue1.6e-45
Seed eggNOG ortholog2880.D7FV43
KEGG koko:K09568
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidyl-prolyl cis-trans isomerase
EggNOG OGsCOG0545@1,KOG0544@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-12_005100.1
Exons3
Model size288
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1458.3343.1prot_L-elsbetiae_contig1458.3343.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1458 2291..3145 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.413806-CDS-L-elsbetiae_contig1458:2290..24041622815585.413806-CDS-L-elsbetiae_contig1458:2290..2404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1458 2291..2404 -
1691682974.8017511-CDS-L-elsbetiae_contig1458:2290..24041691682974.8017511-CDS-L-elsbetiae_contig1458:2290..2404Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1458 2291..2404 -
1622815585.424462-CDS-L-elsbetiae_contig1458:2721..27901622815585.424462-CDS-L-elsbetiae_contig1458:2721..2790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1458 2722..2790 -
1691682974.812366-CDS-L-elsbetiae_contig1458:2721..27901691682974.812366-CDS-L-elsbetiae_contig1458:2721..2790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1458 2722..2790 -
1622815585.4343448-CDS-L-elsbetiae_contig1458:3040..31451622815585.4343448-CDS-L-elsbetiae_contig1458:3040..3145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1458 3041..3145 -
1691682974.8207567-CDS-L-elsbetiae_contig1458:3040..31451691682974.8207567-CDS-L-elsbetiae_contig1458:3040..3145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1458 3041..3145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1458.3343.1

>prot_L-elsbetiae_contig1458.3343.1 ID=prot_L-elsbetiae_contig1458.3343.1|Name=mRNA_L-elsbetiae_contig1458.3343.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=96bp
MGVTVETTKAGDKRTYPKRGDAVTMDYTGTLEDGTVFDSSIRKGRRFNCT
IGIGQVIKGWDEGVPQMSLGEKAILRCTSDYAYGPDGAGGVIPPNA
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mRNA from alignment at L-elsbetiae_contig1458:2291..3145-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1458.3343.1 ID=mRNA_L-elsbetiae_contig1458.3343.1|Name=mRNA_L-elsbetiae_contig1458.3343.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=855bp|location=Sequence derived from alignment at L-elsbetiae_contig1458:2291..3145- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGTCACTGTTGAAACAACGAAAGCAGGGGACAAGAGGACGTACCC
CAAGCGTGGCGACGCTGTGACTATGGACTACACTGGAACTCTGGAAGATG
GAACGGTGGGGTTGGCCGCAGAATAATTGCCGCGATCAGAATTACCCCGT
AGAAAGTTGCCGTAGATATGCCCGGGTCAGCGCGCCGTGTCGAGCTCCTT
TAGCGGGGCATGCATCGGCTGAAGGTAGTTTTTCAGGTGGTTTTGCCGTG
CTCTTGCCGCCTACCTGCGTGTGTGGGTGATTGTTTTGTTAGACTTGACA
CTGACACAACTGCTGCTGCTGTGTTCTGCCGCATTTGGCGTGTTGTCGTC
GCCAGGTGTTCGACAGCTCGATAAGAAAAGGGAGGCGCTTCAACTGCACC
ATCGGGATTGGGCAAGTCATCAAGGTTCGTGTGCATTTTCCTGTCCGACG
ATAGAGAGGGGGGCAAAGCGCCCGCCGTGTTCAATTTGCGAATTCCCCTC
TTTTAGCATTTTGTGGAAATTCGAAATCCAGGGATCATGTCCGCCCTCTT
GGCACCACACACCTGCCCGTACCTTTCGTTCGGCGCGTGTGGCCTTGAGC
ACCTGACGCTGCGAGTTCTGCCCCTGCCTCGGCTTCTCGTGACCAGCGCG
TCTTGTGATGTTCAGCAGTCCTCCAACTGCATAGGTACCGCTCACGAAAC
GATTGTTGTCCCGCTTTTACCCTTGTATCCTGGTTCGTCAGGGGTGGGAT
GAGGGAGTGCCCCAGATGTCCCTCGGGGAGAAGGCAATCCTCAGGTGCAC
GTCCGACTACGCTTACGGCCCAGACGGAGCGGGGGGCGTGATCCCGCCCA
ACGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1458:2291..3145-

>mRNA_L-elsbetiae_contig1458.3343.1 ID=mRNA_L-elsbetiae_contig1458.3343.1|Name=mRNA_L-elsbetiae_contig1458.3343.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=576bp|location=Sequence derived from alignment at L-elsbetiae_contig1458:2291..3145- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGTCACTGTTGAAACAACGAAAGCAGGGGACAAGAGGACGTACCC
CAAGCGTGGCGACGCTGTGACTATGGACTACACTGGAACTCTGGAAGATG
GAACGATGGGAGTCACTGTTGAAACAACGAAAGCAGGGGACAAGAGGACG
TACCCCAAGCGTGGCGACGCTGTGACTATGGACTACACTGGAACTCTGGA
AGATGGAACGGTGTTCGACAGCTCGATAAGAAAAGGGAGGCGCTTCAACT
GCACCATCGGGATTGGGCAAGTCATCAAGGTGTTCGACAGCTCGATAAGA
AAAGGGAGGCGCTTCAACTGCACCATCGGGATTGGGCAAGTCATCAAGGG
GTGGGATGAGGGAGTGCCCCAGATGTCCCTCGGGGAGAAGGCAATCCTCA
GGTGCACGTCCGACTACGCTTACGGCCCAGACGGAGCGGGGGGCGTGATC
CCGCCCAACGCTGGGTGGGATGAGGGAGTGCCCCAGATGTCCCTCGGGGA
GAAGGCAATCCTCAGGTGCACGTCCGACTACGCTTACGGCCCAGACGGAG
CGGGGGGCGTGATCCCGCCCAACGCT
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