mRNA_L-elsbetiae_contig14568.3339.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14568.3339.1
Unique NamemRNA_L-elsbetiae_contig14568.3339.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14568.3339.1 vs. uniprot
Match: D8LHB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB6_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 2.450e-35
Identity = 83/198 (41.92%), Postives = 118/198 (59.60%), Query Frame = 1 
Query:   58 HPERFLRVGHRLTGMLMYEDNLSALSVSHIDGSIRSVKATGPPPRNIDGKQIGPVPRSFSTVLQSDPRKVMEVHRRRAEIVEEERMEMTG------AKKGMVARVMSFMPFGKAGRRERRQKEHAKAHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLWPTRDGFKVLRRGQLLWRRELTEDNK 630
            HP   L+VG  LTG LM     S +  S  DG+I   KATG PPR+ DG+  GP P + +T++ SDP KV +    RAE++ EE  E T        K+G +A +  +MPFGK G   RR +EHAK H+GEV + +++RG +E ++DGT V ++  G S+FG R KD S++LW +  G ++ R G L W   +  +NK
Sbjct:  137 HPALSLKVGEVLTGTLMSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETITTLVASDPGKVAKRSAIRAELLAEELHERTAQAEGKSGKRGALATIAGWMPFGKGGFLRRRAREHAKVHMGEVNLYVTNRGHLEGSVDGTRVARK-SGPSWFGYRTKDPSYELWVSHSGVEITRNGMLDW--SIEAENK 331
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BLAST of mRNA_L-elsbetiae_contig14568.3339.1 vs. uniprot
Match: D7FMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 1.080e-23
Identity = 66/166 (39.76%), Postives = 105/166 (63.25%), Query Frame = 1 
Query:  145 IDGSIRSVKATGPPPRNIDGKQIGPVPRSFSTVLQSDPRKVMEVHRRRAEIV------EEERMEMTGAKKGMVARVMSFMPFGKAGRRERRQKEHAKAHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKDS-HQLWPTRDGFKVLRRGQLLWRRELTE 621
            IDGS+    ATG PP +++ + I PV ++  T+L+++P+++  V   RAEIV      E+  +E  G K+  +  V+ F+PFGK G R RR +E A AHLGE A++++++G +E ++DG+ VL++  G S+FG RKKDS +++  T DG  V R G+  W  +  E
Sbjct:  319 IDGSVVHATATGTPPGDLEDRSIDPVSQTRRTLLEANPQRMSIVEGLRAEIVAETEEAEKAAVEGQGLKRSKMVTVLGFLPFGKHGFRRRRARERAAAHLGEAALSVTNKGDLEVSVDGSIVLRK-SGPSWFGFRKKDSTYEVRVTEDGVVVSRGGKYDWGIQARE 483
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BLAST of mRNA_L-elsbetiae_contig14568.3339.1 vs. uniprot
Match: D7FTM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM0_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.060e-20
Identity = 56/159 (35.22%), Postives = 95/159 (59.75%), Query Frame = 1 
Query:  148 DGSIRSVKATGPPPRNIDGKQIGPVPRSFSTVLQSDPRKVMEVHRRRAEIVEEERMEMTGA------KKGMVARVMSFMPFGKAGRRERRQKEHAKAHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLWPTRDGFKVLRRGQLLW 603
            DGS+    +TG  PR+ +G+  G +P+   T+L ++ R + +    R+EI+    ++          KK  ++  M F+PFGK G   RR ++ A+AHLGE  + ++S+G++E ++DGT VL++ G  S+FG R+ D S++L  T +G +V RRG  +W
Sbjct:    8 DGSVVFATSTGRVPRDEEGRATGSLPQKRLTLLAANERLMAKAEDFRSEIILRRLVKKNALREGRTLKKSKMSTFMGFLPFGKRGFLHRRARDRAEAHLGEATLKLTSKGILEVSVDGTVVLRKKG-PSYFGFRRTDPSYELQVTEEGIEVSRRGDFVW 165
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BLAST of mRNA_L-elsbetiae_contig14568.3339.1 vs. uniprot
Match: D7G9B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 2.330e-20
Identity = 59/146 (40.41%), Postives = 93/146 (63.70%), Query Frame = 1 
Query:  187 PRNIDGKQIGPVPRSFSTVLQSDPRKVMEVHRRRAEIV----EEERMEMTGA--KKGMVARVMSFMPFGKAGRRERRQKEHAKAHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLWPTRDGFKVLRRGQLLW 603
            PR+ DG   GPVP+   T+L ++PRK+ +V   R+E +    E++R  + G   ++G VA +M F+PFGK G   RR +EHA+AH+GE  ++I+ +G +E ++DG  VL++  G S+FG R+ D S++L  T +G  + RRG   W
Sbjct:  339 PRDADGNTTGPVPQKNRTLLTANPRKMSKVRALRSENIAARLEKKRAALEGRTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHMGEATLSITKKGGLEVSVDGIVVLRK-SGPSWFGFRRTDRSYELRVTEEGVVISRRGMYDW 483
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BLAST of mRNA_L-elsbetiae_contig14568.3339.1 vs. uniprot
Match: A0A6H5JQZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 9.120e-20
Identity = 63/194 (32.47%), Postives = 106/194 (54.64%), Query Frame = 1 
Query:   40 PPELTAHPERFLRVGHRLTGMLMYEDNLSALSVSHIDGSIRSVKATGPPPRNIDGKQIGPVPRSFSTVLQSDPRKVMEVHRRRAEIV------EEERMEMTGAKKGMVARVMSFMPFGKAGRRERRQKEHAKAHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKDSHQLWPTRDGFKVLRRGQLLW 603
            P     H +  L VG  L G L      + +  + ID  +    ATG PP +++ + + P  ++  T+L+++ +++  V   +AEI+      E+E +E  G KK  +  V+ F+PFGK G R RR +EHA AHLGE  ++++++G +E ++DG+ VL +  G S+FG RKKD        +G  ++ +G   W
Sbjct:  111 PDAFQFHSDFVLHVGDFLHGRLPNLAKTAMVYATSIDCFVVRATATGTPPGDLEDRTVDPASQTRRTLLEANTQRMSIVEGLQAEIMAETAEAEKETVEGRGLKKSKMVAVLGFLPFGKHGFRRRRPREHAAAHLGEATLSVTNKGDLEVSVDGSIVLGK-SGPSWFGFRKKDFTYEVRVTEGVVMVSQGGHDW 303
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BLAST of mRNA_L-elsbetiae_contig14568.3339.1 vs. uniprot
Match: D7G9A5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A5_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 3.260e-15
Identity = 41/92 (44.57%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:  331 KKGMVARVMSFMPFGKAGRRERRQKEHAKAHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLWPTRDGFKVLRRGQLLW 603
            ++G VA +M F+PFGK G   RR +EHA+AH+GE  ++I+ +G +E ++DGT VL++  G S+FG R+ D S++L  T +G  + RRG   W
Sbjct:   29 RRGKVATLMGFLPFGKHGFLRRRAREHAEAHVGEATLSITKKGGLEVSVDGTVVLRK-SGPSWFGFRRTDRSYELRVTEEGVDISRRGMYDW 119
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BLAST of mRNA_L-elsbetiae_contig14568.3339.1 vs. uniprot
Match: D7G0T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T0_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.760e-14
Identity = 43/108 (39.81%), Postives = 68/108 (62.96%), Query Frame = 1 
Query:  301 EEERMEMTGAKKGMVARVMSFMPFGKAGRRERRQKEHAKAHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKDS-HQLWPTRDGFKVLRRGQLLWRRELTE 621
            E+E +E  G  K  +  V+ F+PFGK G R RR +EH  AHLGE  ++++++G +E ++DG+ VL++    S+FG R+KDS +++  T DG  V R G+  W  +  E
Sbjct:    8 EKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHVAAHLGEATLSVTNKGDLEVSVDGSIVLRK-SRPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDWGIQARE 114
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14568.3339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LHB6_ECTSI2.450e-3541.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMM4_ECTSI1.080e-2339.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTM0_ECTSI1.060e-2035.22Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G9B0_ECTSI2.330e-2040.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQZ9_9PHAE9.120e-2032.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9A5_ECTSI3.260e-1544.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0T0_ECTSI2.760e-1439.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14568contigL-elsbetiae_contig14568:1200..2702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size970
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14568.3339.1prot_L-elsbetiae_contig14568.3339.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14568 1534..2603 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.0088468-UTR-L-elsbetiae_contig14568:1199..15331622815585.0088468-UTR-L-elsbetiae_contig14568:1199..1533Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14568 1200..1533 -
1691682974.560229-UTR-L-elsbetiae_contig14568:1199..15331691682974.560229-UTR-L-elsbetiae_contig14568:1199..1533Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14568 1200..1533 -
1622815585.0505378-UTR-L-elsbetiae_contig14568:2603..27021622815585.0505378-UTR-L-elsbetiae_contig14568:2603..2702Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14568 2604..2702 -
1691682974.5902283-UTR-L-elsbetiae_contig14568:2603..27021691682974.5902283-UTR-L-elsbetiae_contig14568:2603..2702Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14568 2604..2702 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.0239866-CDS-L-elsbetiae_contig14568:1533..17041622815585.0239866-CDS-L-elsbetiae_contig14568:1533..1704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14568 1534..1704 -
1691682974.569343-CDS-L-elsbetiae_contig14568:1533..17041691682974.569343-CDS-L-elsbetiae_contig14568:1533..1704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14568 1534..1704 -
1622815585.0368414-CDS-L-elsbetiae_contig14568:2237..26031622815585.0368414-CDS-L-elsbetiae_contig14568:2237..2603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14568 2238..2603 -
1691682974.5789049-CDS-L-elsbetiae_contig14568:2237..26031691682974.5789049-CDS-L-elsbetiae_contig14568:2237..2603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14568 2238..2603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14568.3339.1

>prot_L-elsbetiae_contig14568.3339.1 ID=prot_L-elsbetiae_contig14568.3339.1|Name=mRNA_L-elsbetiae_contig14568.3339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
MLMYEDNLSALSVSHIDGSIRSVKATGPPPRNIDGKQIGPVPRSFSTVLQ
SDPRKVMEVHRRRAEIVEEERMEMTGAKKGMVARVMSFMPFGKAGRRERR
QKEHAKAHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKDSHQ
LWPTRDGFKVLRRGQLLWRRELTEDNKD*
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mRNA from alignment at L-elsbetiae_contig14568:1200..2702-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14568.3339.1 ID=mRNA_L-elsbetiae_contig14568.3339.1|Name=mRNA_L-elsbetiae_contig14568.3339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1503bp|location=Sequence derived from alignment at L-elsbetiae_contig14568:1200..2702- (Laminarionema elsbetiae ELsaHSoW15)
GGCCTCGGCCGCGGCCGCAGCAGCATCAACGTGGTACTGCCTCCGGAACT
CACGGCACACCCCGAACGTTTCTTGAGGGTTGGGCATCGCTTGACGGGCA
TGCTGATGTACGAGGACAACCTCTCGGCGCTGAGTGTCAGTCACATCGAC
GGGTCCATCCGGTCGGTGAAGGCGACCGGACCGCCGCCCCGTAACATAGA
CGGCAAGCAGATAGGCCCCGTACCGAGATCGTTCTCCACCGTGCTCCAAT
CCGACCCACGCAAAGTGATGGAGGTGCACCGGCGGCGGGCGGAAATTGTC
GAGGAGGAAAGGATGGAGATGACGGGGGCCAAGAAAGGTATGGTGGCGAG
GGTCATGAGCTTCATGCCCTTCGGCAAGGCGGGCCGGAGGGAACGACGGC
AGAAAGAGCACGCCAAGGCCCACCTAGGGGAGGTCGCCGTCACCATCAGC
AGCAGAGGAGTTGTGGTGAGCACGCGCGCACAAGCGAAGAGCAGGAGAAT
ACGAAACACATAGGTATAGAAGTAATATTCTAGGGCAAAATAATATGCTT
GAAAGCAGTCAATCCTGGACACCATTTTTCGCAACCCACGCAAAAGAAAT
AAATCAGCGCGCAACACCCGGGGGCTGCGTTTCGTAGCGGTGATTTGCTG
TTTTCCTGCAAAGATCACATCAGAGATAGAGGGGATAACGTCGTTCTCGC
TATTGGGCTGATGTAGCTGGCGCTGTGACAGTTTGACATGTGGCGTTTTT
TTGTAGAGCCTCCTATTTCGCAGTTGGAGCAAAACAAAGTAAGCGCGTTC
ACGCGACCGTTCAACCAAATGCAGCCAATGAGCGATGACCCAAAACATTT
TGGTCGTATGTATAATTATACAAACGACCATGGTGCCCACCTACATGCCT
GCATGTATCCGGAAGCCTCTACAATCGTACAAACAACGGCTCTCGATTTA
CCTCCCCCCCCTTTTCCTTCGTTATTCCGCCGCACGAACAACCAACAGGA
GGCCACGATGGATGGCACAACGGTACTCAAAGAGGTTGGGGGCCGATCGT
TCTTCGGCTGCAGGAAGAAGGACTCTCACCAGCTCTGGCCCACGCGCGAC
GGTTTCAAGGTGCTGCGACGAGGCCAGCTCCTCTGGCGGCGTGAGCTCAC
CGAAGACAACAAGGACTAGAAATAAAGACCCGAGTAGGTTTAACTTTATA
GGAGTCCCCCCCCCCTTCTTGAGGGTCTAGTACTGTCCTTGGTTTCGTTT
TCGCTGGGGTTTACTTCGAAGAATTGTTGTGCGTTCGGTAAGCACTCCCC
GGCGCGGTTTGACATCCCGGCGGTACACAGCATCGCGTGGGTGAGAGGCG
GGCCAGCGCGCTCGCTTGCTGTTTCGTGGTACGGAAAACTGGACAAGGTT
GATTTCGTGCTCTCTCGGCGGTGTTTTTTGCATTGTTGCGTTGCAGTCTG
TTTATGGCTCGTTTTCCAACCCTAACTAAAAAAAAAAAAAAGCTCAGGCG
TGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14568:1200..2702-

>mRNA_L-elsbetiae_contig14568.3339.1 ID=mRNA_L-elsbetiae_contig14568.3339.1|Name=mRNA_L-elsbetiae_contig14568.3339.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig14568:1200..2702- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGATGTACGAGGACAACCTCTCGGCGCTGAGTGTCAGTCACATCGA
CGGGTCCATCCGGTCGGTGAAGGCGACCGGACCGCCGCCCCGTAACATAG
ACGGCAAGCAGATAGGCCCCGTACCGAGATCGTTCTCCACCGTGCTCCAA
TCCGACCCACGCAAAGTGATGGAGGTGCACCGGCGGCGGGCGGAAATTGT
CGAGGAGGAAAGGATGGAGATGACGGGGGCCAAGAAAGGTATGGTGGCGA
GGGTCATGAGCTTCATGCCCTTCGGCAAGGCGGGCCGGAGGGAACGACGG
CAGAAAGAGCACGCCAAGGCCCACCTAGGGGAGGTCGCCGTCACCATCAG
CAGCAGAGGAGTTGTGATGCTGATGTACGAGGACAACCTCTCGGCGCTGA
GTGTCAGTCACATCGACGGGTCCATCCGGTCGGTGAAGGCGACCGGACCG
CCGCCCCGTAACATAGACGGCAAGCAGATAGGCCCCGTACCGAGATCGTT
CTCCACCGTGCTCCAATCCGACCCACGCAAAGTGATGGAGGTGCACCGGC
GGCGGGCGGAAATTGTCGAGGAGGAAAGGATGGAGATGACGGGGGCCAAG
AAAGGTATGGTGGCGAGGGTCATGAGCTTCATGCCCTTCGGCAAGGCGGG
CCGGAGGGAACGACGGCAGAAAGAGCACGCCAAGGCCCACCTAGGGGAGG
TCGCCGTCACCATCAGCAGCAGAGGAGTTGTGGAGGCCACGATGGATGGC
ACAACGGTACTCAAAGAGGTTGGGGGCCGATCGTTCTTCGGCTGCAGGAA
GAAGGACTCTCACCAGCTCTGGCCCACGCGCGACGGTTTCAAGGTGCTGC
GACGAGGCCAGCTCCTCTGGCGGCGTGAGCTCACCGAAGACAACAAGGAC
TAGGAGGCCACGATGGATGGCACAACGGTACTCAAAGAGGTTGGGGGCCG
ATCGTTCTTCGGCTGCAGGAAGAAGGACTCTCACCAGCTCTGGCCCACGC
GCGACGGTTTCAAGGTGCTGCGACGAGGCCAGCTCCTCTGGCGGCGTGAG
CTCACCGAAGACAACAAGGACTAG
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