prot_L-elsbetiae_contig1456.3336.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1456.3336.1
Unique Nameprot_L-elsbetiae_contig1456.3336.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length489
Homology
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BLAST of mRNA_L-elsbetiae_contig1456.3336.1 vs. uniprot
Match: D7FKR4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKR4_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.250e-11
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 0 
Query:  420 RLNPRVKVLRSAGVNPSFSEHVWITSSYTRLRFNRAVEKIVMGNIGVSVRGDKEVERTMKKYRDILRG 487
            RL+ RV+VL+S GV  +F++HVW+ SS T LRFN+ VEK++M ++G   RGD EVER MK  R +LRG
Sbjct:  347 RLSRRVEVLQSLGVQINFTDHVWLVSSATTLRFNKWVEKVLMHDVGAVHRGDAEVERRMKSCRAMLRG 414
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1456.3336.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKR4_ECTSI1.250e-1155.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 218..253
e-value: 0.39
score: 19.8
coord: 73..104
e-value: 71.0
score: 12.3
coord: 294..325
e-value: 0.25
score: 20.4
coord: 109..140
e-value: 0.0049
score: 26.1
coord: 403..434
e-value: 0.029
score: 23.5
coord: 330..361
e-value: 10.0
score: 15.1
coord: 145..176
e-value: 0.026
score: 23.7
coord: 258..289
e-value: 0.029
score: 23.5
coord: 366..398
e-value: 1.6E-5
score: 34.3
coord: 181..212
e-value: 0.52
score: 19.4
coord: 38..68
e-value: 2100.0
score: 1.4
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 284..439
e-value: 3.6E-26
score: 91.8
coord: 62..169
e-value: 3.2E-13
score: 49.3
coord: 90..209
e-value: 1.9E-13
score: 50.1
coord: 172..330
e-value: 5.2E-20
score: 71.6
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 318..444
e-value: 2.2E-19
score: 71.7
coord: 9..177
e-value: 1.1E-26
score: 95.6
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 146..330
coord: 20..158
coord: 324..432
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 146..330
NoneNo IPR availablePANTHERPTHR13068:SF78MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEINcoord: 20..158
coord: 324..432

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1456contigL-elsbetiae_contig1456:19100..22915 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1456.3336.1mRNA_L-elsbetiae_contig1456.3336.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1456 19100..22927 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1456.3336.1 ID=prot_L-elsbetiae_contig1456.3336.1|Name=mRNA_L-elsbetiae_contig1456.3336.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=489bp
MAGNSLDARIKSSKAEDDEVLREKIFFLTNIGLTPSESRDVSTHPGFVSV
DFQTTPSWVFLKEKLGLSSYEVAKIAVGMPPILTSPIEKLEHRLSFYLEV
LKFSPEELRALAVKDPAILRLSVNNLREKMRFFMEDLGFRRLQLTKLIQR
SPQVMGNSVEKMRVNVAYLEGDLGVPRPQLKRMIVAQPSLLSHSAESNLR
PKVEWLLANVWEREDTLSKMVTRVPSFTQILTLSVEKNLSPKVSWLRETF
GVDDMALRDMVMKNPGILMSSTTGIRRKMSYLTEELGLPEAHVQNIVVRS
PKLLSYSVENMRDKQRYLEEGLKLGANDVLSLLSRRPELLGIAVDSIESK
VVFLEKGLRATREEASSIVFKYPQVLGLSIETNLRRKVDFFKRVLGGSEK
ELRTAIIGSPALLGYSLTKRLNPRVKVLRSAGVNPSFSEHVWITSSYTRL
RFNRAVEKIVMGNIGVSVRGDKEVERTMKKYRDILRGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf