mRNA_L-elsbetiae_contig1455.3328.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1455.3328.1
Unique NamemRNA_L-elsbetiae_contig1455.3328.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1455.3328.1 vs. uniprot
Match: D8LET8_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LET8_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 1.060e-110
Identity = 162/172 (94.19%), Postives = 167/172 (97.09%), Query Frame = 3 
Query:   42 MSLPVVFFDISIGGQDAGRIEMTLRDDVVPRTAENFRCLCTGEKGTGKSGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHTEPGVLSMANAGANTNGSQFFLCTVVTSWLDGKHVVFGKVTKGMDVVKAVEGVGSSSGKTSSPVMIKDCGQLS 557
            M+ PVVFFDI+IGGQ AGRIEMTLR DVVPRTAENFRCLCTGEKGTG+SGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHTEPGVLSMANAGANTNGSQFFLCTVVTSWLDGKHVVFGKVTKGMDVVKAVE VGSSSGKTSSPV+I DCGQ+S
Sbjct:    1 MANPVVFFDITIGGQTAGRIEMTLRQDVVPRTAENFRCLCTGEKGTGRSGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHTEPGVLSMANAGANTNGSQFFLCTVVTSWLDGKHVVFGKVTKGMDVVKAVEAVGSSSGKTSSPVVIADCGQIS 172
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BLAST of mRNA_L-elsbetiae_contig1455.3328.1 vs. uniprot
Match: A0A7S2UXP3_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXP3_9STRA)

HSP 1 Score: 312 bits (800), Expect = 3.210e-101
Identity = 147/171 (85.96%), Postives = 158/171 (92.40%), Query Frame = 3 
Query:   42 MSLPVVFFDISIGGQDAGRIEMTLRDDVVPRTAENFRCLCTGEKGTGKSGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHTEPGVLSMANAGANTNGSQFFLCTVVTSWLDGKHVVFGKVTKGMDVVKAVEGVGSSSGKTSSPVMIKDCGQL 554
            M+ PVVFFD++IGGQ AGR+EMTLR DVVPRTAENFRCLCTGEKGTG+SGKPLHFKGSSFHRVI DFMCQGGDFTRGNGTGGESIYGEKFADENFQL+HT PG+LSMANAG NTNGSQFFLCT  T+WLDGKHVVFG VT GMDVVKAVE VGS SG+TS+PV+I DCGQL
Sbjct:    1 MANPVVFFDLTIGGQAAGRVEMTLRADVVPRTAENFRCLCTGEKGTGRSGKPLHFKGSSFHRVIPDFMCQGGDFTRGNGTGGESIYGEKFADENFQLRHTGPGILSMANAGPNTNGSQFFLCTTETAWLDGKHVVFGSVTNGMDVVKAVESVGSGSGRTSAPVIIADCGQL 171
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BLAST of mRNA_L-elsbetiae_contig1455.3328.1 vs. uniprot
Match: F0Y4J8_AURAN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4J8_AURAN)

HSP 1 Score: 302 bits (773), Expect = 3.520e-97
Identity = 142/171 (83.04%), Postives = 155/171 (90.64%), Query Frame = 3 
Query:   42 MSLPVVFFDISIGGQDAGRIEMTLRDDVVPRTAENFRCLCTGEKGTGKSGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHTEPGVLSMANAGANTNGSQFFLCTVVTSWLDGKHVVFGKVTKGMDVVKAVEGVGSSSGKTSSPVMIKDCGQL 554
            M+ PVV+FD++IGG D GRIEMTLR DVVP+TAENFR LCTGEKGTG SGKPLHFKGSSFHRVIT+FMCQGGDFT+GNGTGGESIYG KFADENF+LKHT PG+LSMANAG NTNGSQFFLCTV T WLDGKHVVFG VTKGM++VKA+E VGSSSGKTS PVM+ D GQL
Sbjct:    1 MANPVVYFDMAIGGADVGRIEMTLRADVVPKTAENFRALCTGEKGTGPSGKPLHFKGSSFHRVITEFMCQGGDFTKGNGTGGESIYGAKFADENFKLKHTGPGILSMANAGPNTNGSQFFLCTVKTDWLDGKHVVFGSVTKGMEIVKAIEAVGSSSGKTSKPVMVADSGQL 171
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BLAST of mRNA_L-elsbetiae_contig1455.3328.1 vs. uniprot
Match: A0A5J4Y3C2_9CHLO (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y3C2_9CHLO)

HSP 1 Score: 302 bits (773), Expect = 3.640e-97
Identity = 144/172 (83.72%), Postives = 153/172 (88.95%), Query Frame = 3 
Query:   42 MSLPVVFFDISIGGQDAGRIEMTLRDDVVPRTAENFRCLCTGEKGTGKSGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHTEPGVLSMANAGANTNGSQFFLCTVVTSWLDGKHVVFGKVTKGMDVVKAVEGVGSSSGKTSSPVMIKDCGQLS 557
            MS PVVFFD++ GG   GRIEMTLR DVVP+TAENFRCLCTGEKGTG+SGKPL FKGSSFHRVI  FMCQGGDFTRGNGTGGESIYGEKFADENF+LKHT PG+LSMANAGANTNGSQFFLCTV T WLD KHVVFG VTKGMDVV+ VE  GSSSGKTS PV++ DCGQLS
Sbjct:    1 MSNPVVFFDVTAGGSPVGRIEMTLRADVVPKTAENFRCLCTGEKGTGRSGKPLSFKGSSFHRVIPQFMCQGGDFTRGNGTGGESIYGEKFADENFKLKHTGPGILSMANAGANTNGSQFFLCTVQTQWLDDKHVVFGSVTKGMDVVQKVETFGSSSGKTSKPVLVADCGQLS 172
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BLAST of mRNA_L-elsbetiae_contig1455.3328.1 vs. uniprot
Match: A0A835YSF2_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSF2_9STRA)

HSP 1 Score: 299 bits (766), Expect = 4.090e-96
Identity = 142/172 (82.56%), Postives = 153/172 (88.95%), Query Frame = 3 
Query:   42 MSLPVVFFDISIGGQDAGRIEMTLRDDVVPRTAENFRCLCTGEKGTGKSGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHTEPGVLSMANAGANTNGSQFFLCTVVTSWLDGKHVVFGKVTKGMDVVKAVEGVGSSSGKTSSPVMIKDCGQLS 557
            M+ PVV+FD++IGGQ AGRIEMTLR DVVP TAENFR LCTGEKG G+ GK LHFKGSSFHRVITDFMCQGGDFT+GNGTGGESIYGEKF DENF LKHT PG+LSMANAG NTNGSQFFLCTV T WLDGKH VFG VTKGM+VV+A+E VGSSSGKTS PV+I DCGQLS
Sbjct:    1 MANPVVYFDMTIGGQPAGRIEMTLRKDVVPNTAENFRALCTGEKGVGRMGKALHFKGSSFHRVITDFMCQGGDFTKGNGTGGESIYGEKFRDENFTLKHTGPGILSMANAGPNTNGSQFFLCTVPTPWLDGKHCVFGSVTKGMEVVRAIEAVGSSSGKTSKPVVIADCGQLS 172
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BLAST of mRNA_L-elsbetiae_contig1455.3328.1 vs. uniprot
Match: A0A7S2DW34_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DW34_9STRA)

HSP 1 Score: 298 bits (764), Expect = 9.060e-96
Identity = 142/174 (81.61%), Postives = 154/174 (88.51%), Query Frame = 3 
Query:   36 ATMSLPVVFFDISIGGQDAGRIEMTLRDDVVPRTAENFRCLCTGEKGTGKSGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHTEPGVLSMANAGANTNGSQFFLCTVVTSWLDGKHVVFGKVTKGMDVVKAVEGVGSSSGKTSSPVMIKDCGQLS 557
            AT + PVV+FD++I GQ AGRIEMTLR DVVPRTAENFR LCTGEKG G+SGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENF+LKHT PG+LSMANAG NTNGSQFFLCTV T WLDGKH VFG VT GMDVV+ +E VGS  G+TSS V+I DCGQ+S
Sbjct:    2 ATSTNPVVYFDMAIAGQPAGRIEMTLRADVVPRTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFRLKHTGPGILSMANAGPNTNGSQFFLCTVPTPWLDGKHCVFGSVTAGMDVVQNIESVGSGQGRTSSAVVIADCGQIS 175
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BLAST of mRNA_L-elsbetiae_contig1455.3328.1 vs. uniprot
Match: I0YKL7_COCSC (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Coccomyxa TaxID=41891 RepID=I0YKL7_COCSC)

HSP 1 Score: 297 bits (761), Expect = 2.300e-95
Identity = 141/172 (81.98%), Postives = 148/172 (86.05%), Query Frame = 3 
Query:   42 MSLPVVFFDISIGGQDAGRIEMTLRDDVVPRTAENFRCLCTGEKGTGKSGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHTEPGVLSMANAGANTNGSQFFLCTVVTSWLDGKHVVFGKVTKGMDVVKAVEGVGSSSGKTSSPVMIKDCGQLS 557
            MS PVVFFD+S GG   GRIEMTLR+DV PRTAENFR LCTGEKG G+ GKPLHFKGSSFHRVI DFMCQGGDFT GNGTGGESIYG KFADENF LKHT PG+LSMANAGANTNGSQFFLCT  T+WLDGKHVVFG VTKGMDVVK +E  GS SGKTS P+ I DCGQLS
Sbjct:    1 MSNPVVFFDVSAGGAPVGRIEMTLRNDVTPRTAENFRALCTGEKGVGRMGKPLHFKGSSFHRVIPDFMCQGGDFTAGNGTGGESIYGAKFADENFTLKHTGPGILSMANAGANTNGSQFFLCTAKTAWLDGKHVVFGSVTKGMDVVKKIESFGSGSGKTSKPITITDCGQLS 172
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BLAST of mRNA_L-elsbetiae_contig1455.3328.1 vs. uniprot
Match: R1FGE2_EMIHU (Peptidyl-prolyl cis-trans isomerase n=14 Tax=Eukaryota TaxID=2759 RepID=R1FGE2_EMIHU)

HSP 1 Score: 297 bits (760), Expect = 3.250e-95
Identity = 141/172 (81.98%), Postives = 153/172 (88.95%), Query Frame = 3 
Query:   42 MSLPVVFFDISIGGQDAGRIEMTLRDDVVPRTAENFRCLCTGEKGTGKSGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHTEPGVLSMANAGANTNGSQFFLCTVVTSWLDGKHVVFGKVTKGMDVVKAVEGVGSSSGKTSSPVMIKDCGQLS 557
            MS PVVFFD++IGG  AGRIEMTLR DVVP+TAENFR LCTGEKG GKSGKPLHFKGS+FHRVIT+FMCQGGDFT GNGTGGESIYG KFADENFQLKHT PG+LSMANAG  TNGSQFFLCTV T WLDGKHVVFG VTKGM+VVKA+E VGS SG+T+  V+I DCGQ+S
Sbjct:    1 MSCPVVFFDMTIGGAPAGRIEMTLRADVVPKTAENFRALCTGEKGMGKSGKPLHFKGSAFHRVITNFMCQGGDFTAGNGTGGESIYGAKFADENFQLKHTGPGILSMANAGPGTNGSQFFLCTVKTDWLDGKHVVFGSVTKGMEVVKAIEAVGSQSGQTAKKVVIADCGQIS 172
[Close]
BLAST of mRNA_L-elsbetiae_contig1455.3328.1 vs. uniprot
Match: A0A7R9W3L4_9STRA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W3L4_9STRA)

HSP 1 Score: 297 bits (760), Expect = 3.370e-95
Identity = 140/168 (83.33%), Postives = 152/168 (90.48%), Query Frame = 3 
Query:   39 TMSLPVVFFDISIGGQDAGRIEMTLRDDVVPRTAENFRCLCTGEKGTGKSGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHTEPGVLSMANAGANTNGSQFFLCTVVTSWLDGKHVVFGKVTKGMDVVKAVEGVGSSSGKTSSPVMIKD 542
            TM+ PVVFFDI+IGG  AGRIEMTLR D+VPRTAENFRCLCTGEKG G+SGKPLHFKGS+FHRVI DFMCQGGDFTRGNGTGGESIYGEKFADENF L+HT PG+LSMANAG NTNGSQFFLCTV T WLDGKHVVFG VT GMDVVKA+E VGS+SG+TS PV++ D
Sbjct:    6 TMANPVVFFDITIGGAPAGRIEMTLRADIVPRTAENFRCLCTGEKGRGRSGKPLHFKGSTFHRVIDDFMCQGGDFTRGNGTGGESIYGEKFADENFTLRHTGPGILSMANAGPNTNGSQFFLCTVATPWLDGKHVVFGSVTGGMDVVKAIEKVGSASGRTSKPVVVAD 173
[Close]
BLAST of mRNA_L-elsbetiae_contig1455.3328.1 vs. uniprot
Match: A0A7S0I674_9EUKA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I674_9EUKA)

HSP 1 Score: 294 bits (752), Expect = 5.160e-94
Identity = 140/172 (81.40%), Postives = 149/172 (86.63%), Query Frame = 3 
Query:   42 MSLPVVFFDISIGGQDAGRIEMTLRDDVVPRTAENFRCLCTGEKGTGKSGKPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHTEPGVLSMANAGANTNGSQFFLCTVVTSWLDGKHVVFGKVTKGMDVVKAVEGVGSSSGKTSSPVMIKDCGQLS 557
            M  P+V+FD++IGG  AGRIEMTLR DVVP+TAENFR LCTGEKG G SGKPLHFKGS+FHRVI+ FMCQGGDFTRGNGTGGESIYG KFADENF LKHT PG LSMANAG  TNGSQFFLCTV T WLDGKHVVFG VT GMDVVKA+E VGS SGKTS PV+I DCGQLS
Sbjct:    1 MGTPIVYFDMTIGGAPAGRIEMTLRADVVPKTAENFRALCTGEKGMGGSGKPLHFKGSAFHRVISQFMCQGGDFTRGNGTGGESIYGAKFADENFSLKHTGPGTLSMANAGPGTNGSQFFLCTVKTDWLDGKHVVFGSVTGGMDVVKAIEAVGSQSGKTSKPVVIADCGQLS 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1455.3328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LET8_ECTSI1.060e-11094.19Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A7S2UXP3_9STRA3.210e-10185.96Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibroc... [more]
F0Y4J8_AURAN3.520e-9783.04Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aureoc... [more]
A0A5J4Y3C2_9CHLO3.640e-9783.72Peptidyl-prolyl cis-trans isomerase n=1 Tax=Trebou... [more]
A0A835YSF2_9STRA4.090e-9682.56Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A7S2DW34_9STRA9.060e-9681.61Peptidyl-prolyl cis-trans isomerase n=2 Tax=Dictyo... [more]
I0YKL7_COCSC2.300e-9581.98Peptidyl-prolyl cis-trans isomerase n=2 Tax=Coccom... [more]
R1FGE2_EMIHU3.250e-9581.98Peptidyl-prolyl cis-trans isomerase n=14 Tax=Eukar... [more]
A0A7R9W3L4_9STRA3.370e-9583.33Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A7S0I674_9EUKA5.160e-9481.40Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phaeoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1455contigL-elsbetiae_contig1455:14788..20058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.0
Seed ortholog evalue5.1e-90
Seed eggNOG ortholog2880.D8LET8
Preferred nameppia
KEGG koko:K01802,ko:K03767,ko:K09565
KEGG Pathwayko01503,ko04020,ko04022,ko04217,ko05012,ko05016,ko05145,map01503,map04020,map04022,map04217,map05012,map05016,map05145
Hectar predicted targeting categoryother localisation
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04147
Ec32 ortholog descriptionpeptidyl-prolyl cis-trans isomerase, cyclophilin-type
Ec32 orthologEc-21_005550.1
Exons5
Model size1723
Cds size519
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.804328-UTR-L-elsbetiae_contig1455:14787..148281622815583.804328-UTR-L-elsbetiae_contig1455:14787..14828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1455 14788..14828 +
1691682973.8827243-UTR-L-elsbetiae_contig1455:14787..148281691682973.8827243-UTR-L-elsbetiae_contig1455:14787..14828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1455 14788..14828 +
1622815583.88094-UTR-L-elsbetiae_contig1455:18895..200581622815583.88094-UTR-L-elsbetiae_contig1455:18895..20058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1455 18896..20058 +
1691682973.9473398-UTR-L-elsbetiae_contig1455:18895..200581691682973.9473398-UTR-L-elsbetiae_contig1455:18895..20058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1455 18896..20058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.8191793-CDS-L-elsbetiae_contig1455:14828..148971622815583.8191793-CDS-L-elsbetiae_contig1455:14828..14897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1455 14829..14897 +
1691682973.899626-CDS-L-elsbetiae_contig1455:14828..148971691682973.899626-CDS-L-elsbetiae_contig1455:14828..14897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1455 14829..14897 +
1622815583.8292344-CDS-L-elsbetiae_contig1455:16391..165631622815583.8292344-CDS-L-elsbetiae_contig1455:16391..16563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1455 16392..16563 +
1691682973.9077055-CDS-L-elsbetiae_contig1455:16391..165631691682973.9077055-CDS-L-elsbetiae_contig1455:16391..16563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1455 16392..16563 +
1622815583.8425803-CDS-L-elsbetiae_contig1455:17573..176861622815583.8425803-CDS-L-elsbetiae_contig1455:17573..17686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1455 17574..17686 +
1691682973.9156609-CDS-L-elsbetiae_contig1455:17573..176861691682973.9156609-CDS-L-elsbetiae_contig1455:17573..17686Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1455 17574..17686 +
1622815583.859606-CDS-L-elsbetiae_contig1455:18065..181251622815583.859606-CDS-L-elsbetiae_contig1455:18065..18125Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1455 18066..18125 +
1691682973.9276168-CDS-L-elsbetiae_contig1455:18065..181251691682973.9276168-CDS-L-elsbetiae_contig1455:18065..18125Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1455 18066..18125 +
1622815583.8710632-CDS-L-elsbetiae_contig1455:18790..188951622815583.8710632-CDS-L-elsbetiae_contig1455:18790..18895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1455 18791..18895 +
1691682973.9365-CDS-L-elsbetiae_contig1455:18790..188951691682973.9365-CDS-L-elsbetiae_contig1455:18790..18895Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1455 18791..18895 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1455.3328.1prot_L-elsbetiae_contig1455.3328.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1455 14829..18895 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1455.3328.1

>prot_L-elsbetiae_contig1455.3328.1 ID=prot_L-elsbetiae_contig1455.3328.1|Name=mRNA_L-elsbetiae_contig1455.3328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
MSLPVVFFDISIGGQDAGRIEMTLRDDVVPRTAENFRCLCTGEKGTGKSG
KPLHFKGSSFHRVITDFMCQGGDFTRGNGTGGESIYGEKFADENFQLKHT
EPGVLSMANAGANTNGSQFFLCTVVTSWLDGKHVVFGKVTKGMDVVKAVE
GVGSSSGKTSSPVMIKDCGQLS*
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mRNA from alignment at L-elsbetiae_contig1455:14788..20058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1455.3328.1 ID=mRNA_L-elsbetiae_contig1455.3328.1|Name=mRNA_L-elsbetiae_contig1455.3328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5271bp|location=Sequence derived from alignment at L-elsbetiae_contig1455:14788..20058+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTCCCTTATTTTCTCCGCCACACACCCTCAGCAGCTACCATGTCTCTC
CCTGTTGTTTTCTTCGACATCTCCATCGGCGGGCAGGACGCCGGACGCAT
CGAGATGACGGTGAGCGCTTCGAGAGAGAGTAGCTCCGCAGCACACGCCC
GACCTGGATCTTATGCCGCCCGATGTTGAGGTTGCTCAGTTAGGGCCTCG
CTCGCAGGTCAAGGCCCGCAAGGGCTGGTGCAGGGTTGGAATACGCTATT
GCAGCGCCGATAGGATCTAGAAGTGCGCGTAGTGCGTGAAAGTGTTTGCC
CCTTCTTGCGGGCATCGAAATGCGAAACCTGCTACTTCTGCTGCTTCTGT
ACACACGCCCTCTGCGCTCTTGGCTCCCACACACGGACGGTGACTTTTGC
GTGTATCTACACATCCCAGACACCCGCCGTCCCTGATCCAGTGGGAAGGA
CGTGGGTATCCGTCCATTGAACCACCAGGCTGGGTGACTTGTCGTCATCA
TATCCCCTCTCGCGGATCTTTTTTGAACATGTGTTTTGCCTTTTCCCCAC
TTTCGGCACCACCACGTGGTTTGGAAGTTTCCCACCTAAAATAGGGCGTG
AAATTTCACTCGCGTTTGTACATCAAACGGGATTGCAGCTCTAGTTAAGT
GGGACACGAAATGCGATGGTAGTCATTGCTGCAGTATGTGAAGACTCTCC
TGGCTTCTGCACACACCCCTGTCGAATGCACTCAGCAGCAGTCCTTAAAG
ACAAAAATGAAATTCTTCCCTCGAAAAGCGGCACGACCATACTTCACCGT
TGGGGATGCTTCGCCGGGGCGCACCCGCATCTCCGGTCGGATCATTTTTG
CTGTTGACTCCACAGCCTGAATCATGGGTGGCGGGGGCAGAGATATGGGG
CTCTAACCTCGCCGTTCTTACCAAGCAGCCGCAGGTGTCCGGACGTATTA
TTCCTCTGGATGCATTGATTGCAGACTTTGCAGACTGCGTATGTACACGT
ACGGTAGATCCTTTTTGCACAGATCCTTCCTCCCCGTTGCTGATTTTGTA
CATTTTGTCCTTCACGTTTCAACATTATCCGCAACCATGGTGGTCAAGGA
GTTCTCTGGTTAGTTTCAGTTTCTCCATCCCCAGGCTTGGTTCTCCTCTC
AAGGGTTCCCCAAAAGCTCCGTACCTCCACCCCCCCTCTCCCCACCCCGC
CGCTCCCCCTTCTCTCTCTCCCACTCCCCCCCCCCCCCCCCCCCTCCAAG
GGAGTACTCGATCCTCTCTTCCGCGCAAGAGCTCCATTTTTTTACCGTTG
ATCCTCTGCTGGTGTATTGTAGTGTTGCACAGGGCGGGTCCACAAGCCAT
CGCGGGCGACAGACGCATGAAGGCCCCAACTGCTTTGACGCCACAGCAGC
ACTGGCAGCGTCCCTCTCAACCTGCTGTAAAACCTGTGCGCCCAGCGTGC
AGGTGCTGCAGATGAATGTATGTATGTACAACACGCAGCTGCACCAAAAC
TACAAAAAAAACATATAAATAGAATATTTTCTTATTTTTGCTGTGTGTTT
GTGTGCGCCGCCGCCGCCCCCTTTGGTCGTCACTGGTGCTGTGTTGTGGT
GCAGCTCCGCGACGACGTCGTCCCGCGCACGGCGGAGAACTTCCGATGCC
TCTGCACCGGCGAGAAGGGCACCGGCAAGTCCGGCAAGCCCCTGCACTTC
AAGGGCTCCTCCTTCCACCGCGTTATCACCGACTTCATGTGCCAGGGCGG
CGACTTCACCCGCGGAAACGGCACCGGTAAGATCTAGCTATAAAAAGCAC
GACGGGGCGGGCTACAATACGGGTGAAGAGTTATTTTCTGCGTAAATAGA
AGCATCGTGGGATGTCAAAGGGTGATAACTTGAGCCCACCAGCAATATGT
ACCGACACGATGTGCACATCTAGATATCTCAATCTTAAAATTTCAGTGTG
TTGATCCCCTCGGGTAGGTAGGTATAGGTAGGTATATGTGCACCCCCGGA
TGGAGGACCCCAGACAGGCACGAACGGTAGTGAAGCGGAGCCCAGCTGCG
CGGGTAAAACCTGCTTCGTCACGCTCAACCGCAGTAAATATCAGCGGCAA
GAAATACGATACTACCTCTCTGCCGAATTTGACCAGACGCGTGTGGGTGT
GGCTGGCTAGCTGGCTGGCTGTATTGCGACACCGCCCGCGACGGTGGACG
GAAACTATGTAGTGTTCCAGAACCACAACGTTTATGTGCTTGTCGCACTC
ATGACGCATGATAAATTTTGTTTTTTTATTCGTGTGCTTCGCGCATGAAC
GCCATGTATTTTTATGCATAAACACGGAAATGGCACGACCGCGTATGTAC
CTACAGCTTAGAACGCCGGCTTACAAACACGCATGTGTAGTAATGTATAC
ATATAGGCGGCCCAAACCCAGAGAGTATAAGCACGACGGTATTTTATGTA
TCGGAAGTGGTGCTCGCCGCGCTCAGAAACAGATTGAGCGCCGTCCTTCC
TTCCACGGCGCGAGGTTCAGACAGACGGACAGATCCACGTGCCATGTTAA
GGCTCCTGCGGCGGGTGCAGTTTTTTTTTGTTGCACTGAACCGCCGTTCG
GTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTT
GCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGC
TTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTT
CTGTGCCTTCGTTTCCTGCAACCAAAACCAAAACAGGCGGCGAGTCCATC
TACGGCGAGAAGTTCGCCGACGAGAACTTCCAGCTCAAGCACACTGAGCC
CGGAGTGCTCTCGATGGCGAACGCGGGAGCGAACACTAACGGCTCTCAGG
TGTGTGTGTGTGTGTGTGTGATTTTGTCATGTGGCGGTGAATTCATCTAA
ATAATAAATCAAACCATGTCCCATCCGGTACAGAAGACTTCTGGTGGGCC
GTCGCTATGAAATCGTGCCGTCCCCCCTGTACCCGCCCCCGCCGCTCCCT
CGTGTAACGGACGCGGGGGCCGAGGCACGCGTCCGCGTCGCACGAAAAGC
ACAACGCGGACTTGTTGGTGTTGGAACAAACCCGGCGTCTGGTATGGATG
TTTCTATGTACATGTCATGTGTGTTGAACGTTAAATGTTCCACCAAGTCT
GAACCGCCACCCGCCCGCTCCCGTGTTCCCTGCCTGCCTGCCTGCCTGCC
TGCCTGCCTGTCCCCCCACATCGCACAGTTCTTCCTGTGCACCGTGGTCA
CGTCCTGGTTGGACGGAAAGCACGTCGTGTTCGGAAAGGTGAGAATAAAA
AAAAAACAGGCCGAAAGCACGTGTGTACGTAACACATTATGCGGTAGTAC
ACGAGGGTCTCCTTCGCCTCCTCTTACGGTATCCGGAGTATATGCGTGGA
ATTGTTATTGTTTGGCTGTGTTTTGTTTGTAGCTGGAATTGCAGCTTTGT
AAGATGAGGGTCGTCCGGCACAGTAGTGGTTTTCTCCATGCCCTGCCTCA
CAGCGGCGAGATTGGTTGCGCGGCTCACATGATAACGGTGGCTGTGTATG
GATGTGCGTTTATTTACAGCTGTTGGAAGTTTGCTGCCGATTGTGGTTGC
CTACATGTGCATTTGTTCGGGGGCTCGTAAGCCCCCCCCCCCCCCCCACA
TGCCCACACATCAGTTGCCCCTTAGGCGCACACCGGGCCTGTGCCCCCTC
AGCTCATCCTGTATTGCGACCGTACCTATTGCCGTGGTACAAATTAAGCT
GCCGGTCAAGCACACAACCTATTTGCTGCACACGGCATTCTCCCGAACCC
AAGGCTGCCTCATGGTTCCAAGTTTCAGAACCCGAGTGTGCAACTGCCCT
TCCTGACCACAACCCGACCTCTCTTGCTTGCGTGACACACACATGTGACA
CTCCGTCGCATCGCTTAACGGGTGGCGACTCTTCTGGCTGATTGTTGCAT
CAGGTGACCAAGGGCATGGACGTTGTCAAGGCTGTCGAGGGTGTCGGTTC
CTCCAGCGGCAAGACCAGCTCCCCCGTCATGATCAAGGACTGCGGACAGC
TGTCTTAGATTATCGCCGGGTGTTTTGACCCCCCCCCCCCCCCCCGCCCC
CTTGATTGGTGTGTCGAGGGTTCTTGGCCTCAGCCTGCCCCCTTCCCCAA
GTAATGTGCGGCACAATAATGCAGGGCGACAGCAACGAGCCGCCGCCTCA
AAACCGCCATCTGCCTGTTGTACGGCGCCCTTTGTTGGCCCGGGTTCTAT
TCTCTTGGTTCTCTTCGGTAGTCATGAGATGAGAGAGAGCTCGGCGCGGC
GCGTGGGTGGGTATAGGAGGGGACGGTGCGGGACGAGGTTAGTTTAGTTT
GTGTTGTGTCTGCCTGCTGCTTTTGTGTTCTCCTGGAAGATATGAAATAC
CTACCCCAAGCGCGCAGGTGCGTATGCCTGCCCGTCGTTGGTTGTTTTGT
TTTCTTCTTTGTCGGAGGTGCCACACAGAGCGCAGGGGAGGGGGGGGGGG
GGCAACGGAGTTAGAAGGGGAGAGGCGGCTTGTTGACAGGGAGAGCGGAA
TATTTGTGTTCGGGGTGAACGTGGACGCGCATGTCGGTAGGTCCGTGGTG
CCGTGCTAGTCCAGCGCCAGTTCTCGTGCGAACGATGGTTGGATTTTATG
TGAAATGCTTGGAGGAGTGTTACGAGGAGAGCGGTTTTGGCGAGAGAGAG
AGAGAGAGGAAGAGTAGGGCGGTATATCCAACTGCAGGCTTGTGGTGCCA
GGTGGGTGGACGGGTTGGTTGGTTTGTGTAGATAGACGTGCATACCACAT
GACCAAAATCGCAGAAATTCTGCCTCTTGTGGACATTTTTGCCCCCTGGT
CCAAGCGTGTAGACATCCACACGTGCGTGCCCTCGTGGACGTGGATCAGG
TGCTTGATGTATGTAGCATGTGGGTTTGTGGGAGCTTCACGTGGGGTTCG
AGGGACGTTGTGCTTGTGCCCACCACAGCAGGGCGGGAAGAAGACGCAGA
TAAATTACTCGGAATTTTCTTCTACAGCATCGCTTGTTGTTGGCGCTCCT
CCCCCCTACTGCCGCGGGCAGCGGATGGCGAGCGTCGTGCTCGGAAAAGA
CGCGTGTTGCTGCTGTCGCGCCTGGAAACTCCTCGGAAAAAAAATGTGTG
CTTGCTTTTTTGGTTGTGTCTTTTCCGTGCGGCGGCGCTCCCTCGGGCAC
GCCGAGACGCAGCGGGAGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1455:14788..20058+

>mRNA_L-elsbetiae_contig1455.3328.1 ID=mRNA_L-elsbetiae_contig1455.3328.1|Name=mRNA_L-elsbetiae_contig1455.3328.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig1455:14788..20058+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTCTCCCTGTTGTTTTCTTCGACATCTCCATCGGCGGGCAGGACGC
CGGACGCATCGAGATGACGATGTCTCTCCCTGTTGTTTTCTTCGACATCT
CCATCGGCGGGCAGGACGCCGGACGCATCGAGATGACGCTCCGCGACGAC
GTCGTCCCGCGCACGGCGGAGAACTTCCGATGCCTCTGCACCGGCGAGAA
GGGCACCGGCAAGTCCGGCAAGCCCCTGCACTTCAAGGGCTCCTCCTTCC
ACCGCGTTATCACCGACTTCATGTGCCAGGGCGGCGACTTCACCCGCGGA
AACGGCACCGCTCCGCGACGACGTCGTCCCGCGCACGGCGGAGAACTTCC
GATGCCTCTGCACCGGCGAGAAGGGCACCGGCAAGTCCGGCAAGCCCCTG
CACTTCAAGGGCTCCTCCTTCCACCGCGTTATCACCGACTTCATGTGCCA
GGGCGGCGACTTCACCCGCGGAAACGGCACCGGCGGCGAGTCCATCTACG
GCGAGAAGTTCGCCGACGAGAACTTCCAGCTCAAGCACACTGAGCCCGGA
GTGCTCTCGATGGCGAACGCGGGAGCGAACACTAACGGCTCTCAGGCGGC
GAGTCCATCTACGGCGAGAAGTTCGCCGACGAGAACTTCCAGCTCAAGCA
CACTGAGCCCGGAGTGCTCTCGATGGCGAACGCGGGAGCGAACACTAACG
GCTCTCAGTTCTTCCTGTGCACCGTGGTCACGTCCTGGTTGGACGGAAAG
CACGTCGTGTTCGGAAAGTTCTTCCTGTGCACCGTGGTCACGTCCTGGTT
GGACGGAAAGCACGTCGTGTTCGGAAAGGTGACCAAGGGCATGGACGTTG
TCAAGGCTGTCGAGGGTGTCGGTTCCTCCAGCGGCAAGACCAGCTCCCCC
GTCATGATCAAGGACTGCGGACAGCTGTCTTAGGTGACCAAGGGCATGGA
CGTTGTCAAGGCTGTCGAGGGTGTCGGTTCCTCCAGCGGCAAGACCAGCT
CCCCCGTCATGATCAAGGACTGCGGACAGCTGTCTTAG
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