mRNA_L-elsbetiae_contig1455.3329.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1455.3329.1
Unique NamemRNA_L-elsbetiae_contig1455.3329.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1455.3329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1455contigL-elsbetiae_contig1455:21189..22501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size641
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1455.3329.1prot_L-elsbetiae_contig1455.3329.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1455 21294..22379 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.538466-UTR-L-elsbetiae_contig1455:21188..212931622815583.538466-UTR-L-elsbetiae_contig1455:21188..21293Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1455 21189..21293 -
1691682973.7092338-UTR-L-elsbetiae_contig1455:21188..212931691682973.7092338-UTR-L-elsbetiae_contig1455:21188..21293Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1455 21189..21293 -
1622815583.5786073-UTR-L-elsbetiae_contig1455:22379..225011622815583.5786073-UTR-L-elsbetiae_contig1455:22379..22501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1455 22380..22501 -
1691682973.736584-UTR-L-elsbetiae_contig1455:22379..225011691682973.736584-UTR-L-elsbetiae_contig1455:22379..22501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1455 22380..22501 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.550618-CDS-L-elsbetiae_contig1455:21293..213941622815583.550618-CDS-L-elsbetiae_contig1455:21293..21394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1455 21294..21394 -
1691682973.7179704-CDS-L-elsbetiae_contig1455:21293..213941691682973.7179704-CDS-L-elsbetiae_contig1455:21293..21394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1455 21294..21394 -
1622815583.5657773-CDS-L-elsbetiae_contig1455:22066..223791622815583.5657773-CDS-L-elsbetiae_contig1455:22066..22379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1455 22067..22379 -
1691682973.7283435-CDS-L-elsbetiae_contig1455:22066..223791691682973.7283435-CDS-L-elsbetiae_contig1455:22066..22379Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1455 22067..22379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1455.3329.1

>prot_L-elsbetiae_contig1455.3329.1 ID=prot_L-elsbetiae_contig1455.3329.1|Name=mRNA_L-elsbetiae_contig1455.3329.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MAPAEARGRLGLLRPLPRRAPILRRQVVAAAAAAAAEAVARRAARDPVKP
PTTMWLSWSRRMAKRQEQQELGEVPAWGRDQGFRSSRSSIRWPAIAIVRA
SAYPGGTLQAGSADGGWACDVSPSRPVDAGHCNPGKM*
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mRNA from alignment at L-elsbetiae_contig1455:21189..22501-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1455.3329.1 ID=mRNA_L-elsbetiae_contig1455.3329.1|Name=mRNA_L-elsbetiae_contig1455.3329.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1313bp|location=Sequence derived from alignment at L-elsbetiae_contig1455:21189..22501- (Laminarionema elsbetiae ELsaHSoW15)
AGCAGACAACGCTGATGGTACCCACACCACTGCTGTAAAGTCGGAAGGAG
TGCTGCTCTCGCCCGGCGTTGTGGCTGGTGCCGGCTCGGTTGGAGAAGCA
GGCATCGCTGTTGCCCGCCGCGATGGCGCCGGCCGAAGCAAGAGGAAGGC
TTGGGCTCCTCCGTCCTCTGCCCAGGCGAGCACCGATACTGCGGCGCCAG
GTAGTGGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGTTGCAAGAAGGGC
GGCAAGAGACCCCGTCAAACCGCCGACGACGATGTGGTTGTCCTGGAGCC
GCCGGATGGCCAAGCGGCAGGAGCAACAAGAACTAGGCGAGGTGCCGGCG
TGGGGCCGGGACCAAGGGTTTCGGTCAAGCCGGAGCAGCATTAGATGGCC
GGCCATAGCTATAGTGCGAGCATCAGCTTACCCAGGTATGTATCATAAGT
TGCTCAAGTTTTTGCTGTAGATCGGGTTTCTCGTAGGAGTGCGAGTTGCC
GTACTGTTCAGGTGGCCCCACAAGGGTTGTACTGCATGTGCAGAGAGGAG
GCAGGATGTGTGGGGCAGAGCAAACCTTTTTGGCCGCTGTTGTGCACGAT
GTTGATGCCGGCGTTACTCTGCCGACGGTTCAATTTTTCGGTCGAGCGTC
TTGCGCGTCTGCCTCGCGATTTCCTCACTTTTCCAGTTCCGACCGACCCG
CCTTTCAATTCGACCACAGCCAGGTCTCTGCTCCCCTGTCTATCCACCTT
TTTTAGGGTCCCGCTGGGTGACAATTGTTCGATGGGCCCTGGCTGAAATA
ACCATGCATTTTGAAAGGGAAAACAGTTAATAAAAAATAGAACCTAACCC
ACTTTGAGACGGGACTCCGTGAGATTCAATCGGTATTCCATATAGATAGT
GACGTAATATTGATTCGGTCGAGTAGAAAAATACCTCAAATATAAGAAGA
ATTCACCACAGTCTCTGCCAGATCAAACATGTATTATGTGTAGTCGGGGG
TCGCCGAGCGGGGCAATAGCTCGTTTTTCTCAGACGCCATTGCCGTCCAT
ACACTCTCCCCCCGCCTCCTTCCCACTTCAACGGTCGCATGAAACACCCA
AACCCAGGTGGAACTCTTCAAGCGGGAAGCGCCGATGGTGGTTGGGCTTG
TGACGTCTCTCCCTCTCGGCCTGTCGATGCCGGCCACTGCAATCCTGGGA
AGATGTAGCTTTTCGGATTCTCTGAAGGTTCTACCATCCTTTTTTTTTCT
TTTTTCTTTTTCGCAGCAGCGAGGCCCAAATGCAGAGGCAATGCTAGACT
TGGGGACTCTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1455:21189..22501-

>mRNA_L-elsbetiae_contig1455.3329.1 ID=mRNA_L-elsbetiae_contig1455.3329.1|Name=mRNA_L-elsbetiae_contig1455.3329.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig1455:21189..22501- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCCGGCCGAAGCAAGAGGAAGGCTTGGGCTCCTCCGTCCTCTGCC
CAGGCGAGCACCGATACTGCGGCGCCAGGTAGTGGCAGCAGCAGCAGCAG
CAGCAGCAGAAGCAGTTGCAAGAAGGGCGGCAAGAGACCCCGTCAAACCG
CCGACGACGATGTGGTTGTCCTGGAGCCGCCGGATGGCCAAGCGGCAGGA
GCAACAAGAACTAGGCGAGGTGCCGGCGTGGGGCCGGGACCAAGGGTTTC
GGTCAAGCCGGAGCAGCATTAGATGGCCGGCCATAGCTATAGTGCGAGCA
TCAGCTTACCCAGATGGCGCCGGCCGAAGCAAGAGGAAGGCTTGGGCTCC
TCCGTCCTCTGCCCAGGCGAGCACCGATACTGCGGCGCCAGGTAGTGGCA
GCAGCAGCAGCAGCAGCAGCAGAAGCAGTTGCAAGAAGGGCGGCAAGAGA
CCCCGTCAAACCGCCGACGACGATGTGGTTGTCCTGGAGCCGCCGGATGG
CCAAGCGGCAGGAGCAACAAGAACTAGGCGAGGTGCCGGCGTGGGGCCGG
GACCAAGGGTTTCGGTCAAGCCGGAGCAGCATTAGATGGCCGGCCATAGC
TATAGTGCGAGCATCAGCTTACCCAGGTGGAACTCTTCAAGCGGGAAGCG
CCGATGGTGGTTGGGCTTGTGACGTCTCTCCCTCTCGGCCTGTCGATGCC
GGCCACTGCAATCCTGGGAAGATGTAGGTGGAACTCTTCAAGCGGGAAGC
GCCGATGGTGGTTGGGCTTGTGACGTCTCTCCCTCTCGGCCTGTCGATGC
CGGCCACTGCAATCCTGGGAAGATGTAG
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