mRNA_L-elsbetiae_contig14545.3325.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14545.3325.1
Unique NamemRNA_L-elsbetiae_contig14545.3325.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14545.3325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14545contigL-elsbetiae_contig14545:457..811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size355
Cds size345
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.419277-UTR-L-elsbetiae_contig14545:456..4661622815583.419277-UTR-L-elsbetiae_contig14545:456..466Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14545 457..466 +
1691682973.6460698-UTR-L-elsbetiae_contig14545:456..4661691682973.6460698-UTR-L-elsbetiae_contig14545:456..466Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14545 457..466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.4321969-CDS-L-elsbetiae_contig14545:466..8111622815583.4321969-CDS-L-elsbetiae_contig14545:466..811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14545 467..811 +
1691682973.6597917-CDS-L-elsbetiae_contig14545:466..8111691682973.6597917-CDS-L-elsbetiae_contig14545:466..811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14545 467..811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14545.3325.1prot_L-elsbetiae_contig14545.3325.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14545 467..811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14545.3325.1

>prot_L-elsbetiae_contig14545.3325.1 ID=prot_L-elsbetiae_contig14545.3325.1|Name=mRNA_L-elsbetiae_contig14545.3325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=115bp
MAHEMLISKYRLPLSPVTELAIKYNLRRPSPGRYGSRREGVSGSIFIHIS
KGFVDAEISKTHVNFFCERARLHGKDADTYIIDNVARRVNTEPNALYMRM
CMMYHQHLRSLHVH*
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mRNA from alignment at L-elsbetiae_contig14545:457..811+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14545.3325.1 ID=mRNA_L-elsbetiae_contig14545.3325.1|Name=mRNA_L-elsbetiae_contig14545.3325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=355bp|location=Sequence derived from alignment at L-elsbetiae_contig14545:457..811+ (Laminarionema elsbetiae ELsaHSoW15)
CCTTTTTTATATGGCCCACGAAATGTTAATAAGTAAATACAGACTGCCGC
TCTCACCCGTGACTGAGCTGGCTATCAAATACAACCTTAGACGTCCGTCA
CCTGGACGATATGGTTCGAGACGAGAGGGGGTTTCAGGGAGTATTTTCAT
ACACATCTCAAAGGGGTTTGTTGATGCTGAGATTTCCAAAACACACGTGA
ATTTCTTTTGCGAGAGAGCAAGGCTTCACGGCAAAGATGCAGATACGTAC
ATAATCGATAATGTAGCTCGTCGCGTGAACACCGAGCCAAACGCATTATA
CATGCGTATGTGTATGATGTACCACCAGCACCTTCGCAGCTTACATGTGC
ACTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14545:457..811+

>mRNA_L-elsbetiae_contig14545.3325.1 ID=mRNA_L-elsbetiae_contig14545.3325.1|Name=mRNA_L-elsbetiae_contig14545.3325.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=690bp|location=Sequence derived from alignment at L-elsbetiae_contig14545:457..811+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCACGAAATGTTAATAAGTAAATACAGACTGCCGCTCTCACCCGT
GACTGAGCTGGCTATCAAATACAACCTTAGACGTCCGTCACCTGGACGAT
ATGGTTCGAGACGAGAGGGGGTTTCAGGGAGTATTTTCATACACATCTCA
AAGGGGTTTGTTGATGCTGAGATTTCCAAAACACACGTGAATTTCTTTTG
CGAGAGAGCAAGGCTTCACGGCAAAGATGCAGATACGTACATAATCGATA
ATGTAGCTCGTCGCGTGAACACCGAGCCAAACGCATTATACATGCGTATG
TGTATGATGTACCACCAGCACCTTCGCAGCTTACATGTGCACTAAATGGC
CCACGAAATGTTAATAAGTAAATACAGACTGCCGCTCTCACCCGTGACTG
AGCTGGCTATCAAATACAACCTTAGACGTCCGTCACCTGGACGATATGGT
TCGAGACGAGAGGGGGTTTCAGGGAGTATTTTCATACACATCTCAAAGGG
GTTTGTTGATGCTGAGATTTCCAAAACACACGTGAATTTCTTTTGCGAGA
GAGCAAGGCTTCACGGCAAAGATGCAGATACGTACATAATCGATAATGTA
GCTCGTCGCGTGAACACCGAGCCAAACGCATTATACATGCGTATGTGTAT
GATGTACCACCAGCACCTTCGCAGCTTACATGTGCACTAA
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