mRNA_L-elsbetiae_contig14540.3324.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14540.3324.1
Unique NamemRNA_L-elsbetiae_contig14540.3324.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14540.3324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14540contigL-elsbetiae_contig14540:94..2862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size349
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14540.3324.1prot_L-elsbetiae_contig14540.3324.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14540 94..2693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.348647-CDS-L-elsbetiae_contig14540:93..2281622815583.348647-CDS-L-elsbetiae_contig14540:93..228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14540 94..228 -
1691682973.6175187-CDS-L-elsbetiae_contig14540:93..2281691682973.6175187-CDS-L-elsbetiae_contig14540:93..228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14540 94..228 -
1622815583.3622446-CDS-L-elsbetiae_contig14540:2648..26931622815583.3622446-CDS-L-elsbetiae_contig14540:2648..2693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14540 2649..2693 -
1691682973.6266503-CDS-L-elsbetiae_contig14540:2648..26931691682973.6266503-CDS-L-elsbetiae_contig14540:2648..2693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14540 2649..2693 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.3729281-UTR-L-elsbetiae_contig14540:2693..28621622815583.3729281-UTR-L-elsbetiae_contig14540:2693..2862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14540 2694..2862 -
1691682973.635471-UTR-L-elsbetiae_contig14540:2693..28621691682973.635471-UTR-L-elsbetiae_contig14540:2693..2862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14540 2694..2862 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14540.3324.1

>prot_L-elsbetiae_contig14540.3324.1 ID=prot_L-elsbetiae_contig14540.3324.1|Name=mRNA_L-elsbetiae_contig14540.3324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
MCAEFTCALNLRGWVSPIGFPHELVAQRAAAGGGGGGGEDRNVRKYEGEG
MATETKERTR
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mRNA from alignment at L-elsbetiae_contig14540:94..2862-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14540.3324.1 ID=mRNA_L-elsbetiae_contig14540.3324.1|Name=mRNA_L-elsbetiae_contig14540.3324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2769bp|location=Sequence derived from alignment at L-elsbetiae_contig14540:94..2862- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGATCCGGTACCAATTGGGCGACGCGTAGCAGCAGGTTCTCTTGTTC
TCTTCACTTCGATCGAGCAAATGAAAGTTATCCGGAGTGCCTTTCTGCTA
CGTGCCTTGTGTAATCGTCAGTGAACCTTCGGAGTCTACGCAGCAATTTT
TTACTTCGTGCTCCCCGAGATGTGCGCTGAGTTTACGTGCGCTTTGAACC
TTCGCGGTTGGGTGGTGAGTTGTTGCGTGCTGCATAAGTCGGCGGTCGGT
GGTCGGCAAGCTCCGAAGGATGAGTTGGCCATTCACTAAACTAAGGTTGA
CGTGGCAGAGCTTTGCAGGGAAGACGTTGAAGGCTCCTGATATTGTAAGT
GTCTTTCTACTCGGCCGGACCGATATGACGTCACTATATGGGGGTTGGTG
TGGTGGTGATGGTTCGTTGTTTTGCTGTAGTGCCGCCAGTACTTTGCAAA
CCGTAGACGACTTCCGCGACAACGGGCGAACTTCTACTTTACATGAAAAA
TAACGTCTTTAATTGCCCCGTGAGTATGATACCATCGGGTGAGCTGACCT
TGATCCATTTCCTGGCCCGGGGTATGCATCTACATACCGTAGGTGACACA
AGATACCACACCCCCTGGACATATTTTCAAGGCTCGATTCCTCCTCAGCA
AGAAGAGCGCCACCTCTTTCGGCACTGGCTTGGTGCTTGCACCTTTTTCG
TTGCGGAGTAATGAAGCTCTAAAATTTGGTCCAGGGGGTGTGGTATCTTG
TGTCACCTACGGTACAAAGATAGACTCATTTTGTACCGTGACACAAGATA
CCACTGGTACAGAAGATGCCCCCCATGATGATATTGGCAGATTTCAAATT
GAAATCCGCGGGGGCCGCTGACAATTTTTCTCCGGGTACGTCTCCGGGCC
TTTTTCTGTTTGGAATCCGTGAAAATTGTCATTTTCGCTTCGTGCTCGAC
TCACAGAGACCTGTTTGCAGTCTAGCCTTCGCTAGCCTTCGCTACCGTGT
GCTCCATTGGTGTGTCTTCTCGGACCCAAATTTGGGAAGCAACGGTGAGG
TATGCGTCTCGCACGCTTTGAAACAAAGGCGGCCTTCGGGCCAGTCCAGA
TTCCAATTTGGAATTCCTTTGTTTCAAAGCGTGCGAGACGCATACCTGCC
TTCGGGCCAGTCCAGATTCCAATTTGGAATTCCTTTGTTTCAAAGCGTGC
GAGACGCATACCTCTCACCGTTGCTCCCCAAATTTGGATCCGAGACAAGA
CACACCAATGGAGCACACGGTAGCGAAGGCTAGACTGCAAGCAGGTCTAT
GTGAGTCGAGCACGCAGCGAAAATGACCATTTTCACGGATTCCAACAGAA
AAAGCCCCCGGAGACATACCCGGAAAAAAATTGTCAGCAGCCCCCGCGAA
TCCAATTTGGAATCTACAGTAGTAGTTCCAAACAATTGGCCTCAGAATAA
TGAGGCGAATATCACCAGGGTACCGAAGATACCACCCCCCCTGAGGTTAC
ACAGCGTAAAATCACGGGGCTCCTACTATCACCCCGCACCTTAGCGCGTG
CGGTGAACCATCGATCTCCTAATGTACGGTGTATGAGGTACTGTTTTACT
CTTTCTTTTCAACGAATGGTTGGTTGATGGTGCACATGCCCGAGTTTTAT
CACCACATCAATCTCAGAACTAACTGCAGCAATATTATCGCAGGCATAAA
TAACCCCCTCTTGTTACCACCCCCCCTGCAGTGCTACATGCAGAGCAGAA
GTCATCACAGGCAGTAATGGCACACACCACCGCTGCCACCCCCCGTTGCT
ATCATCCCCCTTATACGACGGTACAGGCAGTGTTATACGGCGGTACTATC
CCGCCGTTATCACCTCCCGTCGTTATCACCCTCCTTCGATAGCCCTCACA
GCATGCACTTTATCACCGGGGGACAATAGATACCACCCCCCCCCCACAAT
ACCACCCCCCGTGATAACATTTCCGAGCGCCTATGTGTATCACGGGGGGG
GTGTCACTTACGGTATATAACACAGAAAAGAGTCAGCAAAAACTGCATTT
CCCATGGAAGGATTCCTTAGAAACTCGGGGTATCCTTGCACGCGCACGTT
TTACATACATATCTTTCTGTGCACCTCCCTGTGCTCTTATCGCGCACCCA
CACAAACCGCTTCCCCTCGATGCTCTGCTCGCTGGCGAAGGCATACACAC
ACGAAGAGGACCAAAGCCTGTAGACTAGCACCTCTATGTAGGAGAGAGGC
GCACGCCCTTTGTACAGATTGTACATATGCAATTTAAAAAATCAGAGACA
TGTAGTACGTAAGAAAAAGATGCATCACGGATACAGAAAATTAACCCAAC
ATGCACAGAAATATTCCACAGCCCGCATGCACCCCTGTGAAGGAGCGCAG
CTACCAAGACCACGGGTGAAAACTCTACGCCGCGAATGGTTGCATATTCC
ATGAATGCATGCATTTGAGGTGCGCGTATCGCACGGAACACAGTAGTGCC
AAACGAAGCGCTCCATGTTCGCGGAACGTCTGTTGTAGAACTGACACAAA
GCCGTGTTGCGGTTGATGTTTATATTTTGGCATAATGTAATCCTCGAGCA
TCCCTGCGCGCTACATCCAACTTTCCCCACGCAGTCGCCGATAGGCTTCC
CGCATGAGCTCGTAGCCCAAAGAGCAGCGGCAGGAGGAGGAGGAGGAGGA
GGAGAGGACAGGAATGTGAGGAAATATGAAGGGGAAGGGATGGCGACGGA
GACAAAAGAGAGGACCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14540:94..2862-

>mRNA_L-elsbetiae_contig14540.3324.1 ID=mRNA_L-elsbetiae_contig14540.3324.1|Name=mRNA_L-elsbetiae_contig14540.3324.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig14540:94..2862- (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCGCTGAGTTTACGTGCGCTTTGAACCTTCGCGGTTGGGTGATGTG
CGCTGAGTTTACGTGCGCTTTGAACCTTCGCGGTTGGGTGTCGCCGATAG
GCTTCCCGCATGAGCTCGTAGCCCAAAGAGCAGCGGCAGGAGGAGGAGGA
GGAGGAGGAGAGGACAGGAATGTGAGGAAATATGAAGGGGAAGGGATGGC
GACGGAGACAAAAGAGAGGACCAGGTCGCCGATAGGCTTCCCGCATGAGC
TCGTAGCCCAAAGAGCAGCGGCAGGAGGAGGAGGAGGAGGAGGAGAGGAC
AGGAATGTGAGGAAATATGAAGGGGAAGGGATGGCGACGGAGACAAAAGA
GAGGACCAGG
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