mRNA_L-elsbetiae_contig14530.3322.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14530.3322.1
Unique NamemRNA_L-elsbetiae_contig14530.3322.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14530.3322.1 vs. uniprot
Match: D8LCQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ2_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 3.020e-94
Identity = 151/156 (96.79%), Postives = 154/156 (98.72%), Query Frame = 1
Query:    1 SSLIINVEYNQLDPILRATVSPEGDVNDPATGLSPFPGNTNNLVFMLEPYLKVLKGEDEGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGGSAKIGFTSFDKWLTFSPAKNDLESAAAAAADGVPPGTASSAESEFYAQAARRLQV 468
            +SLIINVEYNQLDPILRATVSPEGDVNDP TGLSPFPGNTNNLVFMLEPYLKVLKGEDEGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELG +AKIGFTSFDKWLTFSPAKNDLESAAAAAADGVPPGTASSAESEFYAQAARRLQ+
Sbjct:  408 TSLIINVEYNQLDPILRATVSPEGDVNDPNTGLSPFPGNTNNLVFMLEPYLKVLKGEDEGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGDAAKIGFTSFDKWLTFSPAKNDLESAAAAAADGVPPGTASSAESEFYAQAARRLQM 563          
BLAST of mRNA_L-elsbetiae_contig14530.3322.1 vs. uniprot
Match: A0A836CDZ7_9STRA (Nucleotide-diphospho-sugar transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ7_9STRA)

HSP 1 Score: 231 bits (589), Expect = 1.220e-68
Identity = 119/155 (76.77%), Postives = 132/155 (85.16%), Query Frame = 1
Query:    1 SSLIINVEYNQLDPILRATVSPEGDVNDPATGLSPFPGNTNNLVFMLEPYLKVLKGEDEGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGGSA-KIGFTSFDKWLTFSPAKNDLESAAAAAADGVPPGTASSAESEFYAQAARRL 462
            SSLIINVEYNQLDP+LRATVSPEGDVNDP TG SP+PGNTNN+VF L  Y+K L+G+DEGVVVEFVNPKYK  SRT FKKPTRLECMMQDFPKLM++EL  S   IGFTS +KWL+FSPAKN LE+ AA A  GVPP TASSAE+EFYAQ  RR+
Sbjct:  385 SSLIINVEYNQLDPLLRATVSPEGDVNDPETGFSPYPGNTNNIVFELGSYVKTLQGKDEGVVVEFVNPKYKDASRTAFKKPTRLECMMQDFPKLMAQELDQSDFTIGFTSLEKWLSFSPAKNSLEAGAAGAPSGVPPNTASSAEAEFYAQNVRRV 539          
BLAST of mRNA_L-elsbetiae_contig14530.3322.1 vs. uniprot
Match: A0A7S2Y4M2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4M2_9STRA)

HSP 1 Score: 213 bits (541), Expect = 5.430e-63
Identity = 110/157 (70.06%), Postives = 130/157 (82.80%), Query Frame = 1
Query:    1 SSLIINVEYNQLDPILRATVSP--EGDVNDPATGLSPFPGNTNNLVFMLEPYLKVLKGEDEGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGGSAKIGFTSFDKWLTFSPAKNDLESAAAAAADGVPPGTASSAESEFYAQAARRLQ 465
            +SLIINVEYNQL P+L+A  SP  EGDVNDPATGLSP+PGN NN+VF ++ YLKVL+GED+GVVVEFVNPKYK  +RT FKKP RLE MMQDFPKLMSKELG  A+IGFT+ DKWL+FSPAKN L++ A  A +GVPP T SS E+E YA  AR+++
Sbjct:  319 TSLIINVEYNQLGPLLQAN-SPTGEGDVNDPATGLSPYPGNANNIVFKMDQYLKVLEGEDQGVVVEFVNPKYKDEARTLFKKPARLESMMQDFPKLMSKELGNHARIGFTTLDKWLSFSPAKNSLDTGAGNAKNGVPPATVSSGEAENYAATARKMK 474          
BLAST of mRNA_L-elsbetiae_contig14530.3322.1 vs. uniprot
Match: A0A4D9D7Z1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7Z1_9STRA)

HSP 1 Score: 209 bits (532), Expect = 3.440e-62
Identity = 104/147 (70.75%), Postives = 122/147 (82.99%), Query Frame = 1
Query:    4 SLIINVEYNQLDPILRATVSPEGDVNDPATGLSPFPGNTNNLVFMLEPYLKVLKGEDEGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGGSAKIGFTSFDKWLTFSPAKNDLESAAAA-AADGVPPGTASSAESEFY 441
            S+IINVEYNQLDP+LRAT  P+GD ND +TG SPFPGN NN+V  L  Y +VL+GE +GVV EFVNPK+K  SRT F KPTRLECMMQDFPKL++KE+GG A++GFTSF+KWL+FSPAKN LE+ A A AA GVPP TASSAE +FY
Sbjct:  255 SIIINVEYNQLDPLLRATTYPDGDTNDQSTGCSPFPGNANNIVMYLPNYHRVLQGEAQGVVEEFVNPKFKDSSRTAFTKPTRLECMMQDFPKLLAKEIGGKARVGFTSFEKWLSFSPAKNSLEAGAKAFAATGVPPATASSAEMDFY 401          
BLAST of mRNA_L-elsbetiae_contig14530.3322.1 vs. uniprot
Match: W7UBR1_9STRA (UDPglucose pyrophosphorylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBR1_9STRA)

HSP 1 Score: 209 bits (532), Expect = 5.950e-61
Identity = 104/147 (70.75%), Postives = 122/147 (82.99%), Query Frame = 1
Query:    4 SLIINVEYNQLDPILRATVSPEGDVNDPATGLSPFPGNTNNLVFMLEPYLKVLKGEDEGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGGSAKIGFTSFDKWLTFSPAKNDLESAAAA-AADGVPPGTASSAESEFY 441
            S+IINVEYNQLDP+LRAT  P+GD ND +TG SPFPGN NN+V  L  Y +VL+GE +GVV EFVNPK+K  SRT F KPTRLECMMQDFPKL++KE+GG A++GFTSF+KWL+FSPAKN LE+ A A AA GVPP TASSAE +FY
Sbjct:  428 SIIINVEYNQLDPLLRATTYPDGDTNDQSTGCSPFPGNANNIVMYLPNYHRVLQGEAQGVVEEFVNPKFKDSSRTAFTKPTRLECMMQDFPKLLAKEIGGKARVGFTSFEKWLSFSPAKNSLEAGAKAFAATGVPPATASSAEMDFY 574          
BLAST of mRNA_L-elsbetiae_contig14530.3322.1 vs. uniprot
Match: A0A7R9VXE0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VXE0_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.480e-59
Identity = 101/155 (65.16%), Postives = 117/155 (75.48%), Query Frame = 1
Query:    4 SLIINVEYNQLDPILRATVSPEGDVNDPATGLSPFPGNTNNLVFMLEPYLKVLKGEDEGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGGSAKIGFTSFDKWLTFSPAKNDLESAAAAAADGV-PPGTASSAESEFYAQAARRLQ 465
            SL+INVEYNQLDP+L+     +GDV DPATG SPFPGN+N LV  +  Y K L+GED+GVVVEFVNPKYK  +RTEFKKPTRLECMMQD PKL  KE+G  A IGFT+FD+W +FSPAKN LES   A   G   PGT SSAES+ Y Q  R+L+
Sbjct:   67 SLVINVEYNQLDPLLKTQGDKKGDVPDPATGYSPFPGNSNILVLEMSAYAKTLRGEDQGVVVEFVNPKYKDDTRTEFKKPTRLECMMQDIPKLFQKEMGSDANIGFTNFDRWFSFSPAKNSLESGVDAVKGGSNAPGTMSSAESDKYVQNQRKLK 221          
BLAST of mRNA_L-elsbetiae_contig14530.3322.1 vs. uniprot
Match: A0A7S0C779_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C779_9STRA)

HSP 1 Score: 200 bits (509), Expect = 2.310e-58
Identity = 103/155 (66.45%), Postives = 118/155 (76.13%), Query Frame = 1
Query:    4 SLIINVEYNQLDPILRATVSPEGDVNDPATGLSPFPGNTNNLVFMLEPYLKVLKGEDEGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGGSAKIGFTSFDKWLTFSPAKNDLESAAAAAADG-VPPGTASSAESEFYAQAARRLQ 465
            SL+INVEYNQLDP+L      +GDV DP++G SPFPGN NNLV  L  Y K LKGEDEGVVVEFVNPKYK  +RTEFKKPTRLECMMQDFPKL+ KE+G  A +GFT  D+WLTFSPAKN LE+   +  +G   PGT SSAESE Y Q  R+L+
Sbjct:  315 SLVINVEYNQLDPLLLGQGDRKGDVADPSSGFSPFPGNANNLVLELASYAKTLKGEDEGVVVEFVNPKYKDETRTEFKKPTRLECMMQDFPKLLQKEMGKEANVGFTMLDRWLTFSPAKNSLEAGVESCKNGSTAPGTMSSAESEKYIQNQRKLR 469          
BLAST of mRNA_L-elsbetiae_contig14530.3322.1 vs. uniprot
Match: A0A7S2MCW7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MCW7_9STRA)

HSP 1 Score: 197 bits (501), Expect = 2.040e-56
Identity = 103/155 (66.45%), Postives = 116/155 (74.84%), Query Frame = 1
Query:    4 SLIINVEYNQLDPILRATVSPEGDVNDPATGLSPFPGNTNNLVFMLEPYLKVLKGEDEGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGGSAKIGFTSFDKWLTFSPAKNDLESAAAAAADG-VPPGTASSAESEFYAQAARRLQ 465
            SL+INVEYNQLDP+LR+     GDV D ATG SPFPGN NNLV  +  Y K L+GED+GVVVEFVNPKYK  +RT+FKKPTRLECMMQD PKL  KELG  A IGFT FD+W TFSPAKN LES   A  +G   PGT SSAES+ Y Q  R+L+
Sbjct:  448 SLVINVEYNQLDPLLRSQGDCLGDVPDSATGYSPFPGNANNLVIEMGAYAKTLRGEDQGVVVEFVNPKYKDDTRTDFKKPTRLECMMQDIPKLFQKELGSEANIGFTMFDRWFTFSPAKNSLESGIEAVQNGNTAPGTMSSAESDKYVQNQRKLK 602          
BLAST of mRNA_L-elsbetiae_contig14530.3322.1 vs. uniprot
Match: B7GCG1_PHATC (Precursor of phosphorylase udp-glucose diphosphorylase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GCG1_PHATC)

HSP 1 Score: 195 bits (495), Expect = 9.780e-56
Identity = 101/154 (65.58%), Postives = 114/154 (74.03%), Query Frame = 1
Query:    4 SLIINVEYNQLDPILRATVSPEGDVNDPATGLSPFPGNTNNLVFMLEPYLKVLKGEDEGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGGSAKIGFTSFDKWLTFSPAKNDLESAA-AAAADGVPPGTASSAESEFYAQAARRL 462
            SL+INVEYNQLDP+LR     +GDV DP TG SPFPGN NNL+  L  Y K L+GED+GVV+EFVNPKYK  SRTEFKKPTRLECMMQD PKL  KE+G  A IGFT FD+W TFSPAKN L++   A  A    PGT SSAES+ Y Q  R+L
Sbjct:  410 SLVINVEYNQLDPLLRTQGDGKGDVADPETGYSPFPGNANNLIIELTAYGKTLRGEDQGVVLEFVNPKYKDASRTEFKKPTRLECMMQDIPKLFQKEMGAEANIGFTLFDRWFTFSPAKNALDAGQDAVEAGSTAPGTMSSAESDKYIQNQRKL 563          
BLAST of mRNA_L-elsbetiae_contig14530.3322.1 vs. uniprot
Match: A0A7S4ADM5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ADM5_9STRA)

HSP 1 Score: 194 bits (493), Expect = 1.850e-55
Identity = 99/155 (63.87%), Postives = 116/155 (74.84%), Query Frame = 1
Query:    4 SLIINVEYNQLDPILRATVSPEGDVNDPATGLSPFPGNTNNLVFMLEPYLKVLKGEDEGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELGGSAKIGFTSFDKWLTFSPAKNDLESAAAAAADG-VPPGTASSAESEFYAQAARRLQ 465
            SL+INVEYNQLDP+LR+    +GDV DP+TG SP+PGN NNLV  L  Y K L+GED+GVV+EFVNPKYK  +RT+FKKPTRLECMMQD PKL  KELG +  +GFT  D+W TFSPAKN LES   A   G   PGT SSAES+ Y Q  R+L+
Sbjct:  407 SLVINVEYNQLDPLLRSQGDCKGDVADPSTGYSPYPGNANNLVIALGAYAKTLRGEDQGVVLEFVNPKYKDETRTDFKKPTRLECMMQDIPKLFQKELGSNVSVGFTMLDRWFTFSPAKNSLESGIEAVEGGSTAPGTMSSAESDKYIQNQRKLK 561          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14530.3322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCQ2_ECTSI3.020e-9496.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CDZ7_9STRA1.220e-6876.77Nucleotide-diphospho-sugar transferase n=1 Tax=Tri... [more]
A0A7S2Y4M2_9STRA5.430e-6370.06Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9D7Z1_9STRA3.440e-6270.75Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7UBR1_9STRA5.950e-6170.75UDPglucose pyrophosphorylase n=1 Tax=Nannochlorops... [more]
A0A7R9VXE0_9STRA2.480e-5965.16Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S0C779_9STRA2.310e-5866.45Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2MCW7_9STRA2.040e-5666.45Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
B7GCG1_PHATC9.780e-5665.58Precursor of phosphorylase udp-glucose diphosphory... [more]
A0A7S4ADM5_9STRA1.850e-5563.87Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14530contigL-elsbetiae_contig14530:1565..4394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score299.7
Seed ortholog evalue8.1e-79
Seed eggNOG ortholog2880.D8LCQ2
Preferred nameUSP
KEGG rclassRC00002
KEGG koko:K00972,ko:K12447
KEGG ReactionR00289,R00416,R00502,R01381,R03077,R08845
KEGG Pathwayko00040,ko00052,ko00053,ko00520,ko01100,ko01130,map00040,map00052,map00053,map00520,map01100,map01130
KEGG ModuleM00014,M00361,M00362
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Utp--glucose-1-phosphate uridylyltransferase
EggNOG OGsCOG4284@1,KOG2388@2759
EC2.7.7.23,2.7.7.64,2.7.7.83
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons3
Model size468
Cds size468
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14530.3322.1prot_L-elsbetiae_contig14530.3322.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14530 1565..4394 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.1298244-CDS-L-elsbetiae_contig14530:1564..17201622815583.1298244-CDS-L-elsbetiae_contig14530:1564..1720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14530 1565..1720 -
1691682973.4984837-CDS-L-elsbetiae_contig14530:1564..17201691682973.4984837-CDS-L-elsbetiae_contig14530:1564..1720Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14530 1565..1720 -
1622815583.1441832-CDS-L-elsbetiae_contig14530:2428..25841622815583.1441832-CDS-L-elsbetiae_contig14530:2428..2584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14530 2429..2584 -
1691682973.5110028-CDS-L-elsbetiae_contig14530:2428..25841691682973.5110028-CDS-L-elsbetiae_contig14530:2428..2584Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14530 2429..2584 -
1622815583.1540623-CDS-L-elsbetiae_contig14530:4238..43941622815583.1540623-CDS-L-elsbetiae_contig14530:4238..4394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14530 4239..4394 -
1691682973.521314-CDS-L-elsbetiae_contig14530:4238..43941691682973.521314-CDS-L-elsbetiae_contig14530:4238..4394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14530 4239..4394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14530.3322.1

>prot_L-elsbetiae_contig14530.3322.1 ID=prot_L-elsbetiae_contig14530.3322.1|Name=mRNA_L-elsbetiae_contig14530.3322.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
SSLIINVEYNQLDPILRATVSPEGDVNDPATGLSPFPGNTNNLVFMLEPY
LKVLKGEDEGVVVEFVNPKYKAGSRTEFKKPTRLECMMQDFPKLMSKELG
GSAKIGFTSFDKWLTFSPAKNDLESAAAAAADGVPPGTASSAESEFYAQA
ARRLQV
back to top

mRNA from alignment at L-elsbetiae_contig14530:1565..4394-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14530.3322.1 ID=mRNA_L-elsbetiae_contig14530.3322.1|Name=mRNA_L-elsbetiae_contig14530.3322.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2830bp|location=Sequence derived from alignment at L-elsbetiae_contig14530:1565..4394- (Laminarionema elsbetiae ELsaHSoW15)
TCCTCGCTGATCATCAACGTGGAGTACAACCAGCTCGACCCGATCCTACG CGCGACGGTGTCGCCGGAGGGTGACGTCAACGACCCCGCCACGGGACTGT CGCCTTTCCCGGGGAACACCAACAACCTCGTCTTCATGCTCGAGCCCTAC CTGAAGGTAATCGGAAGGTGTTTGCCCCCGCCTCGAACTTATACCTAAAT AATAGTGTTTTCAGCTCATCGGTAAGTATAATGTAGTTATTTAGTGATTC ATCAAGTCCATGACCGTCTGACCTCACCGTCGACGAGGGAAAGGGGCGGC TGGACCCTTCTCGCGACAGAAATCTTAGGCAAGCACCGCAGACGGGGGGG GAGTGGGGGGGCCTTGGGGAAAGGAACCCTTCTGTGTGACCACGGTTCAG TACTGTGGCAAGATATTTCCTCGTGACAGTGAGCCAGCCCATCGAGCACT GCAAATAAATGTCAAGAAGAAGAAAATATAAATAAAAATAAAAATGGTCA TCCGGAGTGAGCTTCGGAGAAGACTCTGTCATGTCCAGCCACTAGTGGTG GTACAAGTAGTACAACAGTGGTAAGAGAAGGAGTGATCACTTGGCGGTCT TACTCTGAGGTACTCATCGGGGGTCATTGGTGGGGGTATACCCGTGCCGT ATTTTCGCCTCCGCGGTGCCCCCAATTTTACGGTTGTATATTCTTCCTGC ACTGCAAAGTGTAGTACCTCTTAAGTACACCGCAAGGTGTAGTACACGTC TCCACTTGGGGGGACTGTCGCCAAATGGGAAGGACACACACACACACAGA CACACACACACACACATTCTTCCTGCTGGTTGTCGATCCATTCACTAGAG TGTTGGGTCTTTGGCTGAGGCCTCCTGCCCACCCCGTCTAGTGGGCCCAC CCAAACTTGGTTGCTTTCCTTTGCTTTCTTGTTCCACAGTCGAGGTTCAG TTGTAGTACCGTAGGTGACACAAGATACCACACCCCCTGGACAGATTTTC GAAGCTCGATTCCTCCCCAGCAAGAATAGTGCTATTAGTGCCGAAATGGG TGGCGTTGGAAAGATCTAGTCGAGCGCTGTCCAAAAATATGGCGTTTGGT GCTGGCACCTTCTTCGTCACGGAGTTATGGAGCTCTTAAATTGTGGTGTG GTTTCTTATGTCACCTACGGTAGTGGTAGTAGTAGTAGAAGTAGCAGCAG CAGCAGCAGCAGCAAAGTAACCGACGGCGCAACCAAAAGAGCAGTTGTGG CTTCGTGCTGCTGCGTGAGACGGTCCGTGTTCTCGTGCATGTTGCATGCC CCCCGTACCGTCACAAGGGGGCCCGAACACAGTTTGGACGAGCAGCTGAC ACACACACGTGTTGCACCCCAGTCACACAAGAAACGTCTCTATTTTTTGT TTCCCTTTTTTTTTTTTTTTGATCTCACAGTTGTGAAAGTAACATCACGT GGTGACAGGCAGTAGTGATCGCCCGTCCTTCAAAAAGCGGATTTTCCATG AACGGGGTGACTTTTTTTGCATTTTGTTTCGTCCCATTATTTGGCCTATC CGTTGTCTGCCTATCCGTTGTCTGCCCGGCTGGCCCCATCCCTCCACTAC GACTAGCTAAATAGACGACCAAACCGGGGTCACACATGATTGATCTCTCG TCACGCTTTGTTTTTTGTTTCGTCCCATTATTGGCGTATTCGTTGTCTGC CCCGCTGGCCCCCTTCCTTCACTACGACTACATAGCTACACGACCAAACC GGGGTCCCGTCACACAGGATTGATCCCTCGTCACGCGTTTGCGCGCGTGC ATGCTTTCAGGTTCTCAAGGGCGAGGACGAAGGGGTGGTGGTCGAGTTCG TCAACCCCAAGTACAAGGCCGGCAGCCGCACGGAGTTCAAGAAGCCCACG CGGCTGGAGTGCATGATGCAGGACTTCCCCAAGCTCATGTCGAAGGAGCT GGGGGGCTCCGCGAAGGTGCGTCAGAGAGAGAGGGGGGGGGTATGTGTGC TCTTCGTGTATTCAGTGCAGGAGTTGCTGCCGTCTATGGCGCACATTAGG GGAGCCCCGCATCCCCGCTACGTATTATCTACGCGTATGCCCTTGGGCGA AGGGTTGCCTTTGGGGGATAGGTTGATGTGAAAAACCGTCATCACCGACA TCACCACCACCACCACCACCACCACCACCACCAGCAACAGCAACAGCAGC AGCAGCGGCGAATAAACTGAGCAAGGCAGACTTATGTAGCCTGCTTTTTT CTCACCTCCCCCCCACTTTGGCAAAGATAAAAGATGAATACGCACCCGAC GGGACGATCCTTCCTCTCCCTCGCTACATACCCCTCTCCGCTTCTATGTC GCACTACTCTTACCTTCTTCCCTACTCAAGGCGTTCGTCGTTTGTCGTTC TCTCCGGCTCGGCATTAGCTCAAACCGGCCGACTCCACTGCACCTCGACG CCCTACACCCTACTGATGTGCAGTCACTGTGCCCCCCCCCGACCCACCCC CCCGCGTCCTCAATTTGCGTGTCACGAGTCGAGCTATCATTCACTCACCG CCTGTGTGTCCTCAATTTGCGTGTCACGAGTCGAGCCTTCATGTACTCAT CGCATCTTGCGTCTTACGTAATTCACGGGACCCCCTGTGTGCTATGTGTG TGTGTGTTTTTTGTTTTTGTGCAGATCGGGTTCACGTCGTTCGACAAGTG GCTCACGTTCTCGCCGGCCAAGAACGACCTCGAGTCGGCGGCGGCGGCGG CCGCAGACGGCGTGCCCCCCGGCACGGCCTCCAGCGCCGAGTCCGAGTTC TACGCCCAGGCGGCGCGGCGGCTGCAAGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14530:1565..4394-

>mRNA_L-elsbetiae_contig14530.3322.1 ID=mRNA_L-elsbetiae_contig14530.3322.1|Name=mRNA_L-elsbetiae_contig14530.3322.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig14530:1565..4394- (Laminarionema elsbetiae ELsaHSoW15)
TCCTCGCTGATCATCAACGTGGAGTACAACCAGCTCGACCCGATCCTACG
CGCGACGGTGTCGCCGGAGGGTGACGTCAACGACCCCGCCACGGGACTGT
CGCCTTTCCCGGGGAACACCAACAACCTCGTCTTCATGCTCGAGCCCTAC
CTGAAGTCCTCGCTGATCATCAACGTGGAGTACAACCAGCTCGACCCGAT
CCTACGCGCGACGGTGTCGCCGGAGGGTGACGTCAACGACCCCGCCACGG
GACTGTCGCCTTTCCCGGGGAACACCAACAACCTCGTCTTCATGCTCGAG
CCCTACCTGAAGGTTCTCAAGGGCGAGGACGAAGGGGTGGTGGTCGAGTT
CGTCAACCCCAAGTACAAGGCCGGCAGCCGCACGGAGTTCAAGAAGCCCA
CGCGGCTGGAGTGCATGATGCAGGACTTCCCCAAGCTCATGTCGAAGGAG
CTGGGGGGCTCCGCGAAGGTTCTCAAGGGCGAGGACGAAGGGGTGGTGGT
CGAGTTCGTCAACCCCAAGTACAAGGCCGGCAGCCGCACGGAGTTCAAGA
AGCCCACGCGGCTGGAGTGCATGATGCAGGACTTCCCCAAGCTCATGTCG
AAGGAGCTGGGGGGCTCCGCGAAGATCGGGTTCACGTCGTTCGACAAGTG
GCTCACGTTCTCGCCGGCCAAGAACGACCTCGAGTCGGCGGCGGCGGCGG
CCGCAGACGGCGTGCCCCCCGGCACGGCCTCCAGCGCCGAGTCCGAGTTC
TACGCCCAGGCGGCGCGGCGGCTGCAAGTGATCGGGTTCACGTCGTTCGA
CAAGTGGCTCACGTTCTCGCCGGCCAAGAACGACCTCGAGTCGGCGGCGG
CGGCGGCCGCAGACGGCGTGCCCCCCGGCACGGCCTCCAGCGCCGAGTCC
GAGTTCTACGCCCAGGCGGCGCGGCGGCTGCAAGTG
back to top