mRNA_L-elsbetiae_contig1453.3321.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1453.3321.1
Unique NamemRNA_L-elsbetiae_contig1453.3321.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1453.3321.1 vs. uniprot
Match: D7G6T5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6T5_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 1.300e-68
Identity = 149/321 (46.42%), Postives = 185/321 (57.63%), Query Frame = 3 
Query:  252 QKLYLLVFLTRYFDLFFRFVSLYNSVMKVTYIVLTTTTIAMMRFRPSLRASYEVSLDHFRMWVHGIIPSFVLAVVVLLWQAHTWHENKLLWHLYSFRFGDFWWLFSEVLEPLALLPQLLVFRGCTDAGRLAWVYVSLLVAYRGLYGLNWIYRAYNEPWYIHHPIMYAAATVHVGMYVVFMVDRKCRVSRLLPPDETGD--LMEPNSAAREPLLEDQGGTDDYFGDDESG------NIEVSGGGGATGSEVRPSRRQRQGGEVENRIEGVLMRERGRPSSPPGSGXXXXXXXXGSE-------------GGMRGGSDGVYLV 1151
            Q+LYL+VFLTRY DLFFRF+S+YNSVMKV +I+LT  TI M ++RPSL+ASY+ SL +                           +  L+         +F W FSEVLEPLAL+PQLLVFRG TDAGRLAW YV+L+ AYR  Y LNW+YR++ E  YIHHP++YAA  +  GMY++F+VDR  RVS  LPPDETGD  +MEP S+ARE LL DQ    +   + E G        ++SG   A  +  R    QR G E  ++IE VL RERG+  S   SG          E             GG   GS GVYLV
Sbjct:    2 QELYLVVFLTRYLDLFFRFISVYNSVMKVVFIILTALTIGMFKYRPSLKASYDASLPY--------------------------SQTSLV---------NFLWTFSEVLEPLALVPQLLVFRGSTDAGRLAWTYVTLMGAYRAFYILNWVYRSHYEYGYIHHPLVYAAGIIQTGMYLMFLVDRGVRVSPHLPPDETGDVDIMEPTSSARERLLPDQDTDTEPSRNRERGLDGEVHGRKLSGVADAASATSRRGEHQR-GDETVSKIESVLSRERGQGRSVHASGKNAAEDTSSVETRTAXXXXXXXXXGGEMTGSQGVYLV 286
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BLAST of mRNA_L-elsbetiae_contig1453.3321.1 vs. uniprot
Match: D7FRR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR1_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 2.000e-65
Identity = 124/226 (54.87%), Postives = 151/226 (66.81%), Query Frame = 3 
Query:  141 MMNIFRALGDMSHLAAKLLLIVKLHTSRSAAGVSLKTQKLYLLVFLTRYFDLFFRFVSLYNSVMKVTYIVLTTTTIAMMRFRPSLRASYEVSLDHFRMWVHGIIPSFVLAVVVLLWQAHTWHENKLLWHLYSFRFGDFWWLFSEVLEPLALLPQLLVFRGCTDAGRLAWVYVSLLVAYRGLYGLNWIYRAYNEPWYIHHPIMYAAATVHVGMYVVFMVDRKCRVSR 818
            MMNIF  LGDMSHLAA +LL  KLHTSRSAAGVSLK Q+LY++VFLTRY DL + F S YNSVMK+ +I LT  TI M++ RPSL+ASY+ SL       H  +P  +                         RF    W FSEVLEPLA++PQLLVFRG TDAGRL W YV+L+ AYR LY LNW+Y +YN+  Y HHP++YAA  V  GMY++F+VDR+ R +R
Sbjct:    1 MMNIFEFLGDMSHLAATVLLPYKLHTSRSAAGVSLKMQELYMVVFLTRYSDLLYVFSSWYNSVMKIAHIFLTGLTIGMLKSRPSLKASYDASL-------HYYLPGVL-------------------------RFA---WNFSEVLEPLAVVPQLLVFRGSTDAGRLGWTYVTLMGAYRALYILNWVYLSYNDYAYRHHPLVYAAGIVQTGMYLMFLVDRRVRCAR 191
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BLAST of mRNA_L-elsbetiae_contig1453.3321.1 vs. uniprot
Match: D8LJM2_ECTSI (PGPS/D6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM2_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 1.010e-51
Identity = 103/218 (47.25%), Postives = 139/218 (63.76%), Query Frame = 3 
Query:  144 MNIFRALGDMSHLAAKLLLIVKLHTSRSAAGVSLKTQKLYLLVFLTRYFDLFFRFVSLYNSVMKVTYIVLTTTTIAMMRFRPSLRASYEVSLDHFRMWVHGIIPSFVLAVVVLLWQAHTWHENKLLWHLYSFRFG---DFWWLFSEVLEPLALLPQLLVFRGCTDAGRLAWVYVSLLVAYRGLYGLNWIYRAYNEPWYIHHPIMYAAATVHVGMYVVF 788
            MNIFR  GDMSH A+ L+L++KL  S+SAAG+SLKTQ+L+L+VF+TRY DLFFRF+S YNS+MKV YI LT+  I M+R    ++A+Y+ S D F  W   + P   L +++     H+W      W   S  F    +F+W FSEVLEP A++PQL+V +   +   L   YV LL AYR LY +NW+YRA+ E  Y HH ++Y A  V   +Y  F
Sbjct:    1 MNIFRLAGDMSHTASILMLLLKLRASKSAAGISLKTQELFLVVFVTRYVDLFFRFISWYNSIMKVLYITLTSLIIYMIREHIPIKATYDKSQDSFLHWQFAVAPCAALGLLI-----HSWS-----WWTVSMPFSSLINFFWTFSEVLEPFAIVPQLMVLQRYREVENLTGHYVFLLGAYRSLYIVNWVYRAHYEAGYQHHVLVYIAGLVQTLLYADF 208
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BLAST of mRNA_L-elsbetiae_contig1453.3321.1 vs. uniprot
Match: A0A6V1VUP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VUP9_HETAK)

HSP 1 Score: 168 bits (425), Expect = 4.760e-46
Identity = 90/215 (41.86%), Postives = 128/215 (59.53%), Query Frame = 3 
Query:  144 MNIFRALGDMSHLAAKLLLIVKLHTSRSAAGVSLKTQKLYLLVFLTRYFDLFFRFVSLYNSVMKVTYIVLTTTTIAMMRFRPSLRASYEVSLDHFRMWVHGIIPSFVLAVVVLLWQAHTWHENKLLWHLYSFRFGDFWWLFSEVLEPLALLPQLLVFRGCTDAGRLAWVYVSLLVAYRGLYGLNWIYRAYNEPWYIHHPIMYAAATVHVGMYVVF 788
            MNI+R  GD+SH A+  +L+ +LH S+SA G+SLKTQ+L+L+VF+ RY DLF  F+SLYNS MK+ Y+  T+  I +MR +P+ RA+Y+ S D F  W   + PS VL +++ L  A              F F ++ W FS VLE  A++PQL+V +   +   L   Y+  L  YR LY  NW+YRAY+EP Y H  + Y        +Y+ F
Sbjct:    1 MNIYRLAGDLSHAASIWILLWRLHKSKSALGISLKTQELFLVVFMARYLDLFTHFISLYNSFMKIMYLTSTSAIIYLMRMKPTYRATYDASQDSFLHWQFAVAPSVVLGLIISLISAG------------GFSFMEWMWTFSIVLEATAIIPQLIVLQRYREVENLTGNYIFALGLYRALYLCNWVYRAYHEPNYQHSYVAYLCGVAQTALYIDF 203
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BLAST of mRNA_L-elsbetiae_contig1453.3321.1 vs. uniprot
Match: A0A7S2XZQ8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZQ8_9STRA)

HSP 1 Score: 167 bits (424), Expect = 6.680e-46
Identity = 96/215 (44.65%), Postives = 130/215 (60.47%), Query Frame = 3 
Query:  144 MNIFRALGDMSHLAAKLLLIVKLHTSRSAAGVSLKTQKLYLLVFLTRYFDLFFRFVSLYNSVMKVTYIVLTTTTIAMMRFRPSLRASYEVSLDHFRMWVHGIIPSFVLAVVVLLWQAHTWHENKLLWHLYSFRFGDFWWLFSEVLEPLALLPQLLVFRGCTDAGRLAWVYVSLLVAYRGLYGLNWIYRAYNEPWYIHHPIMYAAATVHVGMYVVF 788
            MN+FR  GD+SH A+ ++L+ +L TS+SA G+SLKTQ+L+L+VFL RY DLF  F+SLYNSVMKV YI  T+  I MMR  P+ +A+Y+   D F      ++P  VLA++  L Q               F F +  W+FS  LE  A++PQL+V +   +   L   YV LL  YR LY +NW+YRAY+E  Y H  + YAA  V   +YV F
Sbjct:    3 MNLFRLAGDLSHAASIIILLQRLRTSKSALGISLKTQELFLIVFLCRYLDLFTTFISLYNSVMKVLYISSTSYIIYMMRMLPTYKATYDKDQDSFLHIYFAVVPCLVLALITNLVQG--------------FDFTEMLWIFSIYLEATAIIPQLVVLQRYREVENLTGNYVFLLGCYRALYIMNWVYRAYHEAHYRHSYVAYAAGVVQTALYVDF 203
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BLAST of mRNA_L-elsbetiae_contig1453.3321.1 vs. uniprot
Match: W7T564_9STRA (ER lumen protein-retaining receptor n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T564_9STRA)

HSP 1 Score: 166 bits (420), Expect = 3.090e-45
Identity = 96/215 (44.65%), Postives = 132/215 (61.40%), Query Frame = 3 
Query:  144 MNIFRALGDMSHLAAKLLLIVKLHTSRSAAGVSLKTQKLYLLVFLTRYFDLFFRFVSLYNSVMKVTYIVLTTTTIAMMRFRPSLRASYEVSLDHFRMWVHGIIPSFVLAVVVLLWQAHTWHENKLLWHLYSFRFGDFWWLFSEVLEPLALLPQLLVFRGCTDAGRLAWVYVSLLVAYRGLYGLNWIYRAYNEPWYIHHPIMYAAATVHVGMYVVF 788
            MNIFR  GDMSH+ + ++L+++LH +++A GVSLKTQ+L+L+VF TRY DL  RF+SLYNS MK+ YI  T   I M+R+R   R++Y+ S D FR+    +IP  VLA++  L              +  F F + +W FS  LE +A+LPQL+V +  +    L   Y+  L AYRGLY LNWIYRAY E  Y H  ++YA   V   +Y  F
Sbjct:    3 MNIFRFAGDMSHVFSIIILLLRLHVAKNANGVSLKTQELFLIVFCTRYLDLLIRFISLYNSAMKILYIGSTAAIIHMIRYREPYRSTYDRSQDSFRL-EFALIPCLVLAMITSL--------------IRGFGFIELFWTFSIYLEAVAILPQLIVLQRYSVVENLTGHYIFFLGAYRGLYILNWIYRAYTEKHYHHDYVVYACGFVQTALYADF 202
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BLAST of mRNA_L-elsbetiae_contig1453.3321.1 vs. uniprot
Match: A0A835Z6E1_9STRA (ER lumen protein retaining receptor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E1_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.360e-44
Identity = 95/215 (44.19%), Postives = 130/215 (60.47%), Query Frame = 3 
Query:  144 MNIFRALGDMSHLAAKLLLIVKLHTSRSAAGVSLKTQKLYLLVFLTRYFDLFFRFVSLYNSVMKVTYIVLTTTTIAMMRFRPSLRASYEVSLDHFRMWVHGIIPSFVLAVVVLLWQAHTWHENKLLWHLYSFRFGDFWWLFSEVLEPLALLPQLLVFRGCTDAGRLAWVYVSLLVAYRGLYGLNWIYRAYNEPWYIHHPIMYAAATVHVGMYVVF 788
            MNIFR +GD+ HLA+ LLL++KL  S++A+G+SLKTQ+L+L VF+ RY DLF  F S+YNSVMKV YI LT   I MMR +  +R +Y+ S D F    + + P   LA + +L Q               F   D +W FS  LE +A++PQL+V +   +   L   Y+  L AYR LY LNWIYR+++E  Y HH ++Y A  V   +YV F
Sbjct:    1 MNIFRLVGDLCHLASILLLLLKLRASKNASGISLKTQELFLAVFVCRYLDLFTTFYSVYNSVMKVLYIALTALIIHMMRAQSPIRGTYDASQDTFLHVKYAVAPCAALAALTMLVQG--------------FDVRDLFWNFSIYLEAIAIVPQLIVLQRYREVENLTGHYIFFLGAYRALYILNWIYRSFHERGYKHHYVVYFAGIVQTALYVDF 201
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BLAST of mRNA_L-elsbetiae_contig1453.3321.1 vs. uniprot
Match: B7G303_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G303_PHATC)

HSP 1 Score: 160 bits (404), Expect = 7.050e-43
Identity = 87/215 (40.47%), Postives = 130/215 (60.47%), Query Frame = 3 
Query:  144 MNIFRALGDMSHLAAKLLLIVKLHTSRSAAGVSLKTQKLYLLVFLTRYFDLFFRFVSLYNSVMKVTYIVLTTTTIAMMRFRPSLRASYEVSLDHFRMWVHGIIPSFVLAVVVLLWQAHTWHENKLLWHLYSFRFGDFWWLFSEVLEPLALLPQLLVFRGCTDAGRLAWVYVSLLVAYRGLYGLNWIYRAYNEPWYIHHPIMYAAATVHVGMYVVF 788
            MNIFR  GDM H+ + ++L+++L  +++A G+SL+T +L+LLVF+TRY DLFF F S+YNSVMKV YIV T + +  +RF+  ++++YE S D F  W   + P F +A++  L  +  +   +LLW             FS  LE +A+LPQL+V +   +   L   Y+  + AYR LY +NWIYRA+ E  Y HH ++Y    V   +Y  F
Sbjct:    3 MNIFRLAGDMCHVFSIIVLLLRLRVAKNAQGISLRTNELFLLVFVTRYLDLFFNFFSIYNSVMKVLYIVSTASIVYTIRFKEPIKSTYEKSQDTFLHWKFAVAPCFAIALITHLIGSKRFDMVELLW------------TFSIYLESIAILPQLIVLQRYREVENLTGNYIFFMGAYRALYIVNWIYRAHTEKGYKHHWVVYFCGVVQTLLYADF 205
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BLAST of mRNA_L-elsbetiae_contig1453.3321.1 vs. uniprot
Match: A0A7S3ZPQ8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPQ8_9STRA)

HSP 1 Score: 159 bits (402), Expect = 8.520e-42
Identity = 102/251 (40.64%), Postives = 138/251 (54.98%), Query Frame = 3 
Query:   36 PVTQDVVRRETTTTRLRISASLRERLVVLRSVCLAMMNIFRALGDMSHLAAKLLLIVKLHTSRSAAGVSLKTQKLYLLVFLTRYFDLFFRFVSLYNSVMKVTYIVLTTTTIAMMRFRPSLRASYEVSLDHFRMWVHGIIPSFVLAVVVLLWQAHTWHENKLLWHLYSFRFGDFWWLFSEVLEPLALLPQLLVFRGCTDAGRLAWVYVSLLVAYRGLYGLNWIYRAYNEPWYIHHPIMYAAATVHVGMYVVF 788
            P T  V RR  TT+R     +             A MNIFR  GDMSH+ + L+L+++L +S+SA G+SLKTQ+L+L+VF+TRY DLF  F SLYNS MKV YI  TT  I M+RF+   ++ Y+ S D F      + P   LA+   L +      + L             W FS  LE LA++PQL V +   +   L   YV  L AYRGLY LNW+YR+Y E +Y H+ ++Y +  V   +YV F
Sbjct:   51 PATNRVPRRARTTSRQEAQPA-------------AKMNIFRFAGDMSHVVSILVLLLRLRSSKSAVGISLKTQELFLIVFVTRYLDLFTTFYSLYNSFMKVAYIASTTYIIWMIRFQEPYKSKYDASQDSFLHIKFAVAPCAGLALFACLVKGELSPIDIL-------------WTFSIFLEALAIVPQLFVLQRYREVENLTGHYVFFLGAYRGLYILNWVYRSYYEQFYRHNWLVYVSGAVQTALYVDF 275
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BLAST of mRNA_L-elsbetiae_contig1453.3321.1 vs. uniprot
Match: A0A7S2SR11_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR11_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.130e-41
Identity = 91/215 (42.33%), Postives = 130/215 (60.47%), Query Frame = 3 
Query:  144 MNIFRALGDMSHLAAKLLLIVKLHTSRSAAGVSLKTQKLYLLVFLTRYFDLFFRFVSLYNSVMKVTYIVLTTTTIAMMRFRPSLRASYEVSLDHFRMWVHGIIPSFVLAVVVLLWQAHTWHENKLLWHLYSFRFGDFWWLFSEVLEPLALLPQLLVFRGCTDAGRLAWVYVSLLVAYRGLYGLNWIYRAYNEPWYIHHPIMYAAATVHVGMYVVF 788
            MN+FRA GD+SH+ +  +L+++L +++ AAG+SLKTQ+L+L+VFL RY DLF  F+S YN++MK+ YI  T   + M+R++   R+ Y+VS D F     GI P  VLA++ +L+Q             +SF   D  W+FS  LE +A+LPQL+V     +   L   Y+  L AYR LY LNWIYR+Y E  Y H+   Y A      +YV F
Sbjct:   47 MNVFRAAGDLSHVISIFMLLLRLISTQQAAGISLKTQELFLVVFLCRYLDLFTTFISWYNTIMKILYICSTGYIVYMIRYKEPFRSKYDVSQDTFAHVKIGIAPCMVLAMLTMLFQ-------------WSFDIFDLLWIFSIYLEAIAILPQLIVLHRYGEVENLTGHYIFFLGAYRALYILNWIYRSYYEKGYHHNWPGYIAGACQTALYVDF 248
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1453.3321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6T5_ECTSI1.300e-6846.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRR1_ECTSI2.000e-6554.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJM2_ECTSI1.010e-5147.25PGPS/D6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM2... [more]
A0A6V1VUP9_HETAK4.760e-4641.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XZQ8_9STRA6.680e-4644.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7T564_9STRA3.090e-4544.65ER lumen protein-retaining receptor n=2 Tax=Monodo... [more]
A0A835Z6E1_9STRA1.360e-4444.19ER lumen protein retaining receptor-domain-contain... [more]
B7G303_PHATC7.050e-4340.47Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S3ZPQ8_9STRA8.520e-4240.64Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2SR11_9STRA1.130e-4142.33Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1453contigL-elsbetiae_contig1453:49..5351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score230.7
Seed ortholog evalue1e-57
Seed eggNOG ortholog2880.D7G6T5
Preferred nameERD2A
KEGG koko:K08235,ko:K10949
KEGG Pathwayko05110,map05110
Hectar predicted targeting categorymitochondrion
GOsGO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005801,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0010204,GO:0012505,GO:0016020,GO:0023052,GO:0031347,GO:0031349,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0080134,GO:0098827
EggNOG free text desc.ER retention sequence binding
EggNOG OGsCOG5196@1,KOG3106@2759
EC2.4.1.207
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Exons7
Model size1341
Cds size1014
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.9958065-UTR-L-elsbetiae_contig1453:48..2351622815582.9958065-UTR-L-elsbetiae_contig1453:48..235Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1453 49..235 -
1691682973.4102602-UTR-L-elsbetiae_contig1453:48..2351691682973.4102602-UTR-L-elsbetiae_contig1453:48..235Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1453 49..235 -
1622815583.0973825-UTR-L-elsbetiae_contig1453:5211..53511622815583.0973825-UTR-L-elsbetiae_contig1453:5211..5351Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1453 5212..5351 -
1691682973.4847-UTR-L-elsbetiae_contig1453:5211..53511691682973.4847-UTR-L-elsbetiae_contig1453:5211..5351Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1453 5212..5351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.0091038-CDS-L-elsbetiae_contig1453:235..5811622815583.0091038-CDS-L-elsbetiae_contig1453:235..581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1453 236..581 -
1691682973.4217157-CDS-L-elsbetiae_contig1453:235..5811691682973.4217157-CDS-L-elsbetiae_contig1453:235..581Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1453 236..581 -
1622815583.0222564-CDS-L-elsbetiae_contig1453:1009..11721622815583.0222564-CDS-L-elsbetiae_contig1453:1009..1172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1453 1010..1172 -
1691682973.430052-CDS-L-elsbetiae_contig1453:1009..11721691682973.430052-CDS-L-elsbetiae_contig1453:1009..1172Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1453 1010..1172 -
1622815583.035724-CDS-L-elsbetiae_contig1453:1745..18781622815583.035724-CDS-L-elsbetiae_contig1453:1745..1878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1453 1746..1878 -
1691682973.438217-CDS-L-elsbetiae_contig1453:1745..18781691682973.438217-CDS-L-elsbetiae_contig1453:1745..1878Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1453 1746..1878 -
1622815583.0485418-CDS-L-elsbetiae_contig1453:2049..21421622815583.0485418-CDS-L-elsbetiae_contig1453:2049..2142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1453 2050..2142 -
1691682973.446204-CDS-L-elsbetiae_contig1453:2049..21421691682973.446204-CDS-L-elsbetiae_contig1453:2049..2142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1453 2050..2142 -
1622815583.0625541-CDS-L-elsbetiae_contig1453:2748..28421622815583.0625541-CDS-L-elsbetiae_contig1453:2748..2842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1453 2749..2842 -
1691682973.454228-CDS-L-elsbetiae_contig1453:2748..28421691682973.454228-CDS-L-elsbetiae_contig1453:2748..2842Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1453 2749..2842 -
1622815583.074621-CDS-L-elsbetiae_contig1453:3599..36901622815583.074621-CDS-L-elsbetiae_contig1453:3599..3690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1453 3600..3690 -
1691682973.4623656-CDS-L-elsbetiae_contig1453:3599..36901691682973.4623656-CDS-L-elsbetiae_contig1453:3599..3690Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1453 3600..3690 -
1622815583.0861163-CDS-L-elsbetiae_contig1453:5117..52111622815583.0861163-CDS-L-elsbetiae_contig1453:5117..5211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1453 5118..5211 -
1691682973.4718604-CDS-L-elsbetiae_contig1453:5117..52111691682973.4718604-CDS-L-elsbetiae_contig1453:5117..5211Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1453 5118..5211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1453.3321.1prot_L-elsbetiae_contig1453.3321.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1453 236..5211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1453.3321.1

>prot_L-elsbetiae_contig1453.3321.1 ID=prot_L-elsbetiae_contig1453.3321.1|Name=mRNA_L-elsbetiae_contig1453.3321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=338bp
MMNIFRALGDMSHLAAKLLLIVKLHTSRSAAGVSLKTQKLYLLVFLTRYF
DLFFRFVSLYNSVMKVTYIVLTTTTIAMMRFRPSLRASYEVSLDHFRMWV
HGIIPSFVLAVVVLLWQAHTWHENKLLWHLYSFRFGDFWWLFSEVLEPLA
LLPQLLVFRGCTDAGRLAWVYVSLLVAYRGLYGLNWIYRAYNEPWYIHHP
IMYAAATVHVGMYVVFMVDRKCRVSRLLPPDETGDLMEPNSAAREPLLED
QGGTDDYFGDDESGNIEVSGGGGATGSEVRPSRRQRQGGEVENRIEGVLM
RERGRPSSPPGSGGGGTASSTGSEGGMRGGSDGVYLV*
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mRNA from alignment at L-elsbetiae_contig1453:49..5351-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1453.3321.1 ID=mRNA_L-elsbetiae_contig1453.3321.1|Name=mRNA_L-elsbetiae_contig1453.3321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5303bp|location=Sequence derived from alignment at L-elsbetiae_contig1453:49..5351- (Laminarionema elsbetiae ELsaHSoW15)
TCCTCTCTTCATTGGGATTTCGACTTGCCCCGTACCCCGTAACGCAGGAC
GTGGTCCGGAGGGAGACCACGACCACTAGGCTCCGCATCTCCGCATCCCT
TCGCGAAAGACTCGTCGTACTTCGCTCCGTCTGCTTGGCCATGATGAACA
TATTCCGGGCCTTAGGGGACATGTCCCACTTGGCAGCGAAGTTATTACTG
ATCGTGAAGCTACACACCTCCCGGAGCGCGGCAGGTGAGGATCGTACCCG
TGCCTCAGCGCCGGCCGGCTGTGTTGGTTATTTCGCAGAGTTTCCTGCTT
GTCCCCTGTCCCCTTTTGGATAACACGTGTACATACTCGCGCGGCTAATA
TTAATAAAGTAAGGGTGGGCCACGCAGCACAGGTTTGATATGCCGGTCTA
TTCGCCGGAGGTGCCGGTTCGCTATTTAGAGTCTCGAATCCCAGTGGGCG
GGTGGCATTATGACTGGTAGTCTCCGCTGACTGGTAGTCCAGTGGTCATT
CGAGCTTCTAACAAAAGCCAATGCCCGCGTCCTTCTAGCTGGTAAGCCAA
GAACTTGGGATTTCACCCCCAGGGTTGCCGTCCCTGTGATCAGCGCTGTC
TTGCCCGACACTTCCACTCCGGTACAAGAGGTTCATCGGCTAGGCCAGTT
TCTTTCCTAGGTTATTGTTATTGTAGCTTATCTACAATGCGTTGGATGGC
AGAATGTGCATATACATATATAGTCTAATTACATAGATATATGCGCAGCG
TGGTCTACAAAGTGTTTTATGATGTCTACGTGTAGCTCTTTAGCGCGCCC
TCGGAGTGGTTAACCCAGTGCGCGCAGCGCGCGTGCCAGTTGGGGCCGCG
TTCTTGAAGGTGGTCAAACTTCGTGCGATCTCCGCTTTGTGTCCCCTCTT
TTTGTTAACTCCGGGGCTGCTTTTCGTCCTGTCCTGGAATCTCCGACAGA
AATCTTGACGTACGCCTGTCTGTGTTGCACGGTCATCTCTTGTCGTATAG
CACCACGAAACCGGCGTGACGACCAGTGCCTTATTTTCCCTCTCAGAAGA
TACATGGACCGTCAACCGGTGCAGAGTAACCGTCCCCGAATCGGTGGGAG
AGAGAGAGATAGGGCGAATAGCACGAATACACAGCACATGAAACTTGCGA
GAGCACATCACAGCAGAGATGAGCGTGGCGGTGTTATCGTGCGTGTCATG
TTGTTTGTGCTGTACCATCGGCATCGCTAACCGATTGTCCAATGAAAAGT
CGTCAGCAGTCTCAACGGCCAAAAGCACGCCCAGCGCTTTCCTAAAGCAG
GCTCCGCGAAGGAATCGCCTGCGGATGTATGTGTACGTGTGTGTGTGTGT
GTGTATTCTACGTTGCGCGTGTTCTCTGCTGGTTCTCCTCAGAGCGTCGT
GTGCGTAGATGTGCTGCGTACCGCTATCTCTCTCTCTCTCTCTCTCTCCC
TCTCTCACATACATGCATGTGCCACACAATGCATTTCCACAAAATGTCAC
GGCCGCGCTTCTCAACTTTGAGAGGTATCGCAACCTGCCTTTTTGACGGT
TTCTGCGGGTTTGCCAAGGTGTTTCGCTCGTTGCCAACAACATCTACATG
TCACCCCACACAAGAGGTAAACGGACATAGAAGTACGCTTGCCTTTTGCA
CCGTTCCCCAGGTGTATCGCTCAAGACCCAGAAGCTCTACCTCCTGGTAT
TCCTGACTCGCTACTTTGATCTATTTTTCCGCTTTGTCTCCTTGTATAAC
AGGTGAGACGGAATAGAATAGTGGCCGCAATATTGTGCAAGACGCGGTTT
TACACTTTGCTTTTATCGATAGCCATTGTACTCCTCATCACCCTAACCCC
CCCGTTGGAGGATATAGACTACACCGCTCAAGTTTCGATATATAGACTAA
ATATTGAGCAAGTGCCGTCGGGGGCTTCTCTTCTTTGGTGCTGAACCGTT
TGGTGCTCAATCAATGATGCAGCATCGCTTTGCTCTTGATGCCTGGTTTG
GGTAATGACTCGACCACGACACAACCGTAGTGACCTTCTTTCAAAATTAT
GCACTTTCAAGAGGCCGGCCGTCTTGCGATACCCACGGTCGGTGTGCTTC
CCGGCAATCGCATGTCAAAATTCGCCCCACGTGGCAGGTATGTAGCTGTG
GGACAACGGCTATGGTAGTCTTTTGAGCAGGACAAATAAACGCACTACAT
AGACTACCTATAGCTGGCTAGATTTTATGCAAGTACCGAAAAACCCTTGA
TATGTCGTTGTCTATCACGTTGCTCAGTTCATAGACGGGAGGAAAGTGGG
TAGATGTTGACAGCAGAGAGAAGAAAAGCGGCACAGCAAAGGAGTAGGGG
GCGGTCGGGGGTACACGGATAGTATGATCCGATGTGCGACAGAGAGAGGG
ATGTTCGCAACCGCTAACGCTTTGGTTCCGCTTCTCACCAATATTCGACC
CTGCGCGTGTGCACGTGTGGAAATGGTTCGTGTATCGGCCGGATGTATTT
ATTCACTAGCGTGATGAAGGTCACCTACATTGTTTTGACAACGACCACGA
TCGCCATGATGAGGTTCCGGCCTTCTCTACGGGCCTCATACGAAGTCTCA
CTGGTAAGCCGCTCTGGGTCTATGTGTCCAACAGACCCGGTATTTCCTGA
TTTTGTAGTTCTTTGTTTTTCCGTCTGCCTTTCGTTCACCCGCACCTTTG
CCCCAAGCGCCTGGTGAACCGCTGTTGTATGCAGATTAATTTGTGGGTGA
GTCTTTCAATGGCGTTTCCGTTTGCACTTTTGTGGGAATGAGATGATGCC
ATGCGGAGAGCCCATGAGCTGATAAAACTGTCGGGGGAAATGCTCGGGGC
CGATGGTGAGAGGTTGTGCGTGAACCAGCCACGCACGACGCAGATTCGAA
CATGCTGCGACAACAAAGTAATGAGGCGGAAATGGAATTGAGGGATGAAT
CACGCGTTCTGGGAACGCTCCTCTGAACCTTGAAATGTTTTTTCGGAATC
CATGCCCACGCATCACTACTGCAATCGGTACATGCATGGAGAAATGCTAC
TGCCCGTCGATCTTCGTTCGGCAATCCCGACCCTTTGGCCCATCTTCTTT
TGAGATATTGCCTGCCTCTGCTTTTTTTCCGCACTTTCTTTTATGTGACC
TAGCTGTACTCATCCCGCTCCCCAAATCTACGGCTCTCTCTGTGCGTCAT
CATCACCAGGACCATTTCCGCATGTGGGTGCACGGCATTATCCCGAGCTT
CGTCCTGGCTGTGGTGGTACTCCTGTGGCAAGCACATACATGGCACGAAA
ATGTACGCGCTGCCGCAAACACAGCAGTACGGCATCAAGCAGTGTCGTGG
TATTGTGTTTTTGGCAGCGGTGTACAATAGGGACTCCCGTGTCGATTCTC
TCCTGGGCGCGTTTCTCGAGAACCGACCTCCTTGCTGCTGTGTCTCTGGC
CTTATCACCTTCGCGCTTGGCAGAAACTACTGTGGCATCTGTACTCCTTC
CGCTTCGGAGACTTTTGGTGGCTGTTTTCGGAAGTGCTGGAGCCGCTAGC
GCTCTTGCCGCAGCTGCTCGTGTTTCGTGGCTGCACGGACGCCGGACGAC
TTGCGTGTAAGCTGCAACTTCTTGCGTGGGTTAAGAGAGGGGTGGTTGTT
GTTTTGGCAGGCGCTGAAACCGTCGACTTTATTTTTTTCAGGCGGAAGCT
CCGGGTCTGCGTTGTGGAGGATATGTCAAGTGTATTCCTGTATTCCGGGA
TAGTCTATGTATATAGGCGCACCCGCTCGCCGCACTGCTGAAACACTTTT
GTTTTTGATTGCATATTACCAATCGCCCCATCTCAGCTCCCGACTCTGCT
GCCCGCTCAGCGCTCAGAGATTGACGGTTGGCTGTTGTAGCAGGCATGAC
CCCAAAAGGCGGAACGTGCATCCAGATATGTATGTAGAACAGGTAGCAAA
TCCTAGGACCATGTCGGACACCCGCCATGAGAAGCCTCGAACGTCGGAAG
AAAAAGTGACTGTATTTGAACAGCAACAAGCGATGTTCTACTACCCCCGC
CGATTTTTACGTGACCCGCGATACGTGACGGCTGACCTCGAGTCCCCAAC
CCTTCCTCTCTTTCCGGTTCGGCTGGTCACGTCTGGGCTGTAACATACCA
CGTGATGATGCGGACGGACACGCACCCAGGGGTCTACGTGTCCCTGCTGG
TGGCATACCGAGGGCTCTACGGGCTGAACTGGATCTACAGGGCCTACAAT
GAGCCTTGGTACATTCACCACCCTATTATGTACGCGGCCGCCACAGTCCA
CGTGGGGATGTATGTCGTGTTCATGGTTGACCGGAAATGCAGGTGCGCCG
TTTGTTTTTTTCGGGGGGGGGGGCACTGCTGCTGTAAAGCAGCAGCAGGC
GGGGCGGCAACCGCACTTTATTTGCAGGTTTGGCTGGGCCGCCTCGATTC
ACGCTGCTGAGTTTGGTGATGGTGACGCGTTTCCCTCCCCTCCTTCTTCA
GGGGGGTAAACGCCTCTTCGTTTCCCCTTTGGTGTCCCAAAGGACAGATT
TTCCTGTGGCCTGAAATTCGGATAGAGACGATTTGCCTGTCTATGTATCC
CTTCATGCGTGTCCTTCGATCGGACGACGTGTTTTCGCCGCCCTCCGCCC
CATGACCACTGATGTACAACTCCATGTGGGTAAAACCGTGCCCCCCCGCT
GCTGTAGCAAGACAATCGGCGTTGCTGTGCCCGCCGGTCCTTTCACCAAC
CCCTTTTGTTTTCGCCACAGGGTCTCCCGTCTTTTACCCCCGGACGAAAC
CGGCGACCTGATGGAGCCGAACTCGGCGGCCAGAGAGCCGCTGCTCGAAG
ACCAAGGTGGTACCGACGACTACTTCGGCGATGACGAGTCGGGCAATATT
GAAGTTTCGGGCGGCGGTGGTGCGACGGGTTCGGAAGTCAGGCCTTCACG
CCGGCAGCGACAAGGCGGCGAGGTGGAGAACAGAATCGAAGGCGTTCTGA
TGAGGGAGCGGGGGCGGCCGTCCTCGCCTCCTGGCAGCGGTGGCGGTGGT
ACTGCTAGTTCCACCGGGTCGGAGGGTGGGATGAGAGGCGGCAGCGACGG
GGTGTACCTTGTCTGAGACATTCGCAAAAGGTAGACACAAATTGGCTTCA
TGGCGTGCCAACTGCGCAGACTACAGACATGCTCTTGGTTTCTTCGCCGT
ACCACGAGAAAGAACGTGTGGGGCCTAGAGGTGGCAGCCAAGGGGTCACC
AGGATTGCAGGGCTGGAAGCACACCCCCAAACTTCCATATGGCCGGATTC
GGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1453:49..5351-

>mRNA_L-elsbetiae_contig1453.3321.1 ID=mRNA_L-elsbetiae_contig1453.3321.1|Name=mRNA_L-elsbetiae_contig1453.3321.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2028bp|location=Sequence derived from alignment at L-elsbetiae_contig1453:49..5351- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGAACATATTCCGGGCCTTAGGGGACATGTCCCACTTGGCAGCGAA
GTTATTACTGATCGTGAAGCTACACACCTCCCGGAGCGCGGCAGATGATG
AACATATTCCGGGCCTTAGGGGACATGTCCCACTTGGCAGCGAAGTTATT
ACTGATCGTGAAGCTACACACCTCCCGGAGCGCGGCAGGTGTATCGCTCA
AGACCCAGAAGCTCTACCTCCTGGTATTCCTGACTCGCTACTTTGATCTA
TTTTTCCGCTTTGTCTCCTTGTATAACAGGTGTATCGCTCAAGACCCAGA
AGCTCTACCTCCTGGTATTCCTGACTCGCTACTTTGATCTATTTTTCCGC
TTTGTCTCCTTGTATAACAGCGTGATGAAGGTCACCTACATTGTTTTGAC
AACGACCACGATCGCCATGATGAGGTTCCGGCCTTCTCTACGGGCCTCAT
ACGAAGTCTCACTGCGTGATGAAGGTCACCTACATTGTTTTGACAACGAC
CACGATCGCCATGATGAGGTTCCGGCCTTCTCTACGGGCCTCATACGAAG
TCTCACTGGACCATTTCCGCATGTGGGTGCACGGCATTATCCCGAGCTTC
GTCCTGGCTGTGGTGGTACTCCTGTGGCAAGCACATACATGGCACGAAAA
TGACCATTTCCGCATGTGGGTGCACGGCATTATCCCGAGCTTCGTCCTGG
CTGTGGTGGTACTCCTGTGGCAAGCACATACATGGCACGAAAATAAACTA
CTGTGGCATCTGTACTCCTTCCGCTTCGGAGACTTTTGGTGGCTGTTTTC
GGAAGTGCTGGAGCCGCTAGCGCTCTTGCCGCAGCTGCTCGTGTTTCGTG
GCTGCACGGACGCCGGACGACTTGCGTAAACTACTGTGGCATCTGTACTC
CTTCCGCTTCGGAGACTTTTGGTGGCTGTTTTCGGAAGTGCTGGAGCCGC
TAGCGCTCTTGCCGCAGCTGCTCGTGTTTCGTGGCTGCACGGACGCCGGA
CGACTTGCGTGGGTCTACGTGTCCCTGCTGGTGGCATACCGAGGGCTCTA
CGGGCTGAACTGGATCTACAGGGCCTACAATGAGCCTTGGTACATTCACC
ACCCTATTATGTACGCGGCCGCCACAGTCCACGTGGGGATGTATGTCGTG
TTCATGGTTGACCGGAAATGCAGGGGTCTACGTGTCCCTGCTGGTGGCAT
ACCGAGGGCTCTACGGGCTGAACTGGATCTACAGGGCCTACAATGAGCCT
TGGTACATTCACCACCCTATTATGTACGCGGCCGCCACAGTCCACGTGGG
GATGTATGTCGTGTTCATGGTTGACCGGAAATGCAGGGTCTCCCGTCTTT
TACCCCCGGACGAAACCGGCGACCTGATGGAGCCGAACTCGGCGGCCAGA
GAGCCGCTGCTCGAAGACCAAGGTGGTACCGACGACTACTTCGGCGATGA
CGAGTCGGGCAATATTGAAGTTTCGGGCGGCGGTGGTGCGACGGGTTCGG
AAGTCAGGCCTTCACGCCGGCAGCGACAAGGCGGCGAGGTGGAGAACAGA
ATCGAAGGCGTTCTGATGAGGGAGCGGGGGCGGCCGTCCTCGCCTCCTGG
CAGCGGTGGCGGTGGTACTGCTAGTTCCACCGGGTCGGAGGGTGGGATGA
GAGGCGGCAGCGACGGGGTGTACCTTGTCTGAGGTCTCCCGTCTTTTACC
CCCGGACGAAACCGGCGACCTGATGGAGCCGAACTCGGCGGCCAGAGAGC
CGCTGCTCGAAGACCAAGGTGGTACCGACGACTACTTCGGCGATGACGAG
TCGGGCAATATTGAAGTTTCGGGCGGCGGTGGTGCGACGGGTTCGGAAGT
CAGGCCTTCACGCCGGCAGCGACAAGGCGGCGAGGTGGAGAACAGAATCG
AAGGCGTTCTGATGAGGGAGCGGGGGCGGCCGTCCTCGCCTCCTGGCAGC
GGTGGCGGTGGTACTGCTAGTTCCACCGGGTCGGAGGGTGGGATGAGAGG
CGGCAGCGACGGGGTGTACCTTGTCTGA
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