mRNA_L-elsbetiae_contig14519.3315.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14519.3315.1
Unique NamemRNA_L-elsbetiae_contig14519.3315.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14519.3315.1 vs. uniprot
Match: D7FTP9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTP9_ECTSI)

HSP 1 Score: 340 bits (873), Expect = 1.410e-115
Identity = 176/259 (67.95%), Postives = 201/259 (77.61%), Query Frame = 1 
Query:    1 MESSRVKNGYGLCTSTLSASVIGRFDGSSEKRKASNRAWDHLYNVDASYQMRKLEGTHPVRKVLHMQKSFPETVMRLNDKGSSNTSGTTASSPTA-RPISSRWLRNPSPNNKNTPL-------QPSSSVHICHGTNDAGQGVSNDATGRRIADEYQFCHNKMAYNRTKGREAEVDGILTGKSPLEKKLPLFPAKATHQQLLGLVQRPSHPDKPAPAVPRERKWLGNNVGWEGNRGLPTPPAGRDAKDGEVHPWPSSQYP 753
            ME  RVKNGYG  TSTLSASVIG FD SSE+RKA+NRAW+  Y+ DA +QMR+L+G HPVRKVLHMQK +PETV RLN +G ++        P A RPIS RW RNP+PNN NT +       +P SS+       D G  +S + T RR   EY FC +KMAYNRT+GREAEVDGILTG SPL+K+LPLFPAKATHQQLLGLV RP+HPDKPAPAVPRERKWLG+NVGWEGNRG+ TPPAGR+AKDGEVHPWPSSQYP
Sbjct:    1 MEQIRVKNGYGFLTSTLSASVIGDFDASSEERKATNRAWNQKYDTDAVFQMRQLQGNHPVRKVLHMQKCYPETVFRLNRQGRTH-------EPDADRPISGRWHRNPAPNNYNTSVATQQRHRRPQSSLQADRSA-DGGHELSGNTTRRRGGYEYHFCRDKMAYNRTRGREAEVDGILTGTSPLDKRLPLFPAKATHQQLLGLVHRPTHPDKPAPAVPRERKWLGDNVGWEGNRGMATPPAGRNAKDGEVHPWPSSQYP 251
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BLAST of mRNA_L-elsbetiae_contig14519.3315.1 vs. uniprot
Match: A0A7S2XVD6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVD6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.230e-13
Identity = 35/73 (47.95%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:  541 PLFPAKATHQQLLGLVQR--PSHPDKPAPAVPRERKWLGNNVGWEGNRGLPTPPA-GRDAKDGEVHPWPSSQY 750
            P+FP  A+HQ  L + ++     P K AP   +  +WLG+ VGWE NRGLPTPP  G D KDG + PWP+++Y
Sbjct:   25 PIFPQGASHQTQLTIDKKLVGDDPRKSAPPTKQPLRWLGDGVGWENNRGLPTPPGVGADGKDGAIKPWPTTKY 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14519.3315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTP9_ECTSI1.410e-11567.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XVD6_9STRA3.230e-1347.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14519contigL-elsbetiae_contig14519:719..4165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_009320.1
Exons4
Model size780
Cds size780
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14519.3315.1prot_L-elsbetiae_contig14519.3315.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14519 719..4165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.547188-CDS-L-elsbetiae_contig14519:718..8131622815582.547188-CDS-L-elsbetiae_contig14519:718..813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14519 719..813 +
1691682973.1487417-CDS-L-elsbetiae_contig14519:718..8131691682973.1487417-CDS-L-elsbetiae_contig14519:718..813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14519 719..813 +
1622815582.561439-CDS-L-elsbetiae_contig14519:2637..30271622815582.561439-CDS-L-elsbetiae_contig14519:2637..3027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14519 2638..3027 +
1691682973.1591527-CDS-L-elsbetiae_contig14519:2637..30271691682973.1591527-CDS-L-elsbetiae_contig14519:2637..3027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14519 2638..3027 +
1622815582.5726385-CDS-L-elsbetiae_contig14519:3309..34941622815582.5726385-CDS-L-elsbetiae_contig14519:3309..3494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14519 3310..3494 +
1691682973.1779075-CDS-L-elsbetiae_contig14519:3309..34941691682973.1779075-CDS-L-elsbetiae_contig14519:3309..3494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14519 3310..3494 +
1622815582.5827146-CDS-L-elsbetiae_contig14519:4055..41651622815582.5827146-CDS-L-elsbetiae_contig14519:4055..4165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14519 4056..4165 +
1691682973.1867146-CDS-L-elsbetiae_contig14519:4055..41651691682973.1867146-CDS-L-elsbetiae_contig14519:4055..4165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14519 4056..4165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14519.3315.1

>prot_L-elsbetiae_contig14519.3315.1 ID=prot_L-elsbetiae_contig14519.3315.1|Name=mRNA_L-elsbetiae_contig14519.3315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=260bp
MESSRVKNGYGLCTSTLSASVIGRFDGSSEKRKASNRAWDHLYNVDASYQ
MRKLEGTHPVRKVLHMQKSFPETVMRLNDKGSSNTSGTTASSPTARPISS
RWLRNPSPNNKNTPLQPSSSVHICHGTNDAGQGVSNDATGRRIADEYQFC
HNKMAYNRTKGREAEVDGILTGKSPLEKKLPLFPAKATHQQLLGLVQRPS
HPDKPAPAVPRERKWLGNNVGWEGNRGLPTPPAGRDAKDGEVHPWPSSQY
PAFTRDPSL*
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mRNA from alignment at L-elsbetiae_contig14519:719..4165+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14519.3315.1 ID=mRNA_L-elsbetiae_contig14519.3315.1|Name=mRNA_L-elsbetiae_contig14519.3315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3447bp|location=Sequence derived from alignment at L-elsbetiae_contig14519:719..4165+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGAGCTCACGCGTGAAGAACGGGTACGGGTTATGCACGTCCACTCT
CAGCGCTTCTGTGATCGGTCGATTCGATGGGAGCTCGGAAAAAAGGTGGA
GCGAATGGGACGGATGTGATTCCCCCGTCCCAAATCGTACAAAATGATGT
ATCGACAGTAGACTTGTATTTATGTAGACTTTTTATGCAATCTACGTATG
TAGAAGTATGTATGTAAGGCATCGTCTACTGCTGTTTGTCTATTGTATGT
CTAGACTGCAACACCACCCAGGCGGTGGCACCTGAGTCCGTCGTGCTAGA
ACGACGAGTCGTTGTGTTCACAACTTAGAAACCTCTCGATACCACAGATG
GTTCTGGTGAGCCCATCGCCTGACACGCACACTCATCAGTCATACACAGC
AGTCGGCTATCGACATAGCTACATAGTCTAGATGTTATGTATAGGCTACT
ATGTACTTCAGTCTTTGTATTGATGCCATCTCTCTTCCCTCTCTCCTCAC
CTCCAAAAGTACGTAAAGTACACATCTAGTGCAATACACGAGCGCACAGC
AGGCGAGCGAGCGGAGTGAGCGTAATTACATACAAAATCCACCAACCGAT
CAACCGCACCCAGACACACGACGTCCATTAGATAGACTATTTTCTCTCAA
TGTGAAAGTTAATTCGGCCGCACACAACAGTCAGCAGTTGGGTGTACCGG
AGGCTGCTTTACGCAGGCCGTGAACGAGATCAGACCGTCAAACCTCTAGG
GAAAGTACTGCCTCGTCGGAACATAGTCGATGCCGCTCACATAGATTCTA
CGTGCGTATCCCAGTGTCCCAGTCTCGGGCATCGCTCTCTCGTTGATGAA
ATTAAGGCGGAGGGGACAGCGAATTTTGGGACTACATAGCTGCATAGACA
AATTTGAAAATGCCTGAACAAGCACATATATCTAAAGCAAAAGCCGATCT
ACCAGGGGGAGCGTTGCGCCAGAAGCTGTTGGTTTTCTCACCCAGCGGCG
AGCTGGGCTGTTGTTTGCACACACATCACGCAGTCCTATCTCCAACCACG
AACCCTAAAATCAAAATAAAAAATGTTTCGCACTCTAAAATAAAGACAAA
ACAGGCGATTTTACAGACGTTCAAAATATGGTTGGGGATCAGATTATTGT
TCGTACAAAATAGCTCTCTGTGTGTACAGGATACCATGGAGAAGGGTGTG
ACGCGTGCTGGCATGCGAAAATCTGCAGCTGGGGCGGAGTAGTAGAGCAC
TGCAGCAGTAGCTCCAAAGAAGTCCGCAATCTGGGCCAAGACGACATCAA
ACACCCACTGCTGTGCTCGCCACCGCAGATCTCAACGCCCATAAGCACGG
GTCTCCAGCAGTAACTATGCAGGGCTACTGCTGGTACCCGTGGTTATTGA
GGTGGGGGTTTATGGCGGCGAACTTAGCAGTGGGTATTTGCTGTCGTTGG
CCCAGATTGCGGAGCTCTTTGGAGCTACTGCTGCGGTGCTCGATAACTCA
GCACCAGCAGCAGATCTGCACATGCCAGCACGCATCACACCCTTCTCCAT
GGTGTCCTCTACGCACAGTGCTGTTTTGTACGAACAATATCCGAGCCCAT
ACCTTATTAGAAGCTGTTGGTTTAACTTGGCTTTTGAAAAGGAAGAACGG
GGATTTTTTTGTCTTGGATTTTGTGAGGGCGTGTTTCGCAGCGTTGCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCGCCCTCCCACCAA
CCCAACCACACCATACGCAGTACCCNNNNNNNNNNTTTTTTTTTTTTTTT
TGTTGAAAAAGGAGGTTGTGTTTTTTTTTTTTTTTTTTTTGTTTGCGTGG
TTGTTGGCCCTGGCCCCCCCCCCCCCCCCCCCCCCCCGCTTTAACGTGTT
TCCCTCAAAAACAACGCAGAAAGGCGAGCAACCGAGCTTGGGACCACCTC
TACAACGTGGACGCATCCTATCAGATGCGCAAGCTGGAGGGGACCCACCC
GGTGCGCAAGGTTCTTCATATGCAGAAGTCCTTCCCTGAGACGGTGATGC
GCCTGAACGACAAGGGCAGCAGCAACACAAGTGGCACAACAGCATCCAGC
CCCACCGCCCGTCCTATCAGCAGCAGATGGCTCCGAAATCCATCTCCCAA
CAACAAAAATACGCCACTACAACCCTCATCATCGGTTCATATCTGCCACG
GCACTAACGATGCCGGGCAGGGAGTGTCCAATGATGCGACGGGAAGACGG
ATTGCCGACGAGTACCAGTTCTGCCACAATAAGATGGCGTACAACAGGAC
TAAGGGGAGGTATGTTGATAAGTTCGGACCGTACTGCCGTTCGTTTACCA
AACGTTTTTGTATTTCGGTATTGATCTACCTACATATTTAGATAGGTGTT
ACATAAAGTTTATCTACTTTGGCACTTTTCGGATCGAGGATAGATGTACA
GTGGAGATACACTTTCACTCTGGAATCGGTTTCACGTTCGTCTCCTGCGC
CTTTATACACGAAACTCTGTCTTGATGTTCGGCGTCGACGGGGAGCCTGA
CGCCTTCTGACCATACCACAACTCTTGTGTAACTGATCCAGGGAAGCTGA
GGTTGACGGTATTCTTACTGGAAAGTCGCCACTCGAAAAAAAGTTACCCT
TGTTCCCGGCGAAGGCTACACACCAGCAGCTGTTGGGACTGGTTCAGCGG
CCTAGTCACCCGGACAAGCCGGCACCCGCGGTACCTAGGGAAAGAAAGTG
GCTTGGGAACAACGTTGGTTGGGAAGGTAACACCAGCAACAATTACAACC
TTACGGTAGAGATGTTATTGTCTCGACTCCAAGGTTTCGCACAGTCAAGA
AAAATAACGTTCATGTGATCAATTGGAACGCTCGATTTAGACACGTATGG
ACACCTACACGAACAAATCTCTGGCGACCAAGCTGTTGCATGTACCCTCA
CGATTTTTTAGCATTGTTTGTGAACATCCTACATACTTAAGAGCAAAACC
GCGAGGGGGGGCGAGGTGGAATATCCTGACCGCCAACTGCACGAAATGAA
AGTGGCTGATGCTTGTTGGAACGTGGTGGGCGCGATCGTATCTACTTTAA
TGGACTGTGACCAACGCGGCGCCTGCTTTGCTGCTAATATTTTCGCAATT
TCTGCTGCTCTAGGCGCGGCCGAGAACGCATCAACCGAAACGAATTTGTG
CACCGAAAGAACAAACGCACACAAGCTCCATAACATGTTATATTCGCCCA
TTTTTCTTTGACCTCCCATCCGGGCTCCTGCCCTGACTTCACAACATTTC
ATTCCCCCGGCCAATAAACATGAACACGCGCGCACAGGGAATCGAGGGCT
GCCCACTCCGCCAGCCGGCCGCGATGCCAAAGACGGAGAGGTTCACCCGT
GGCCGTCATCCCAATACCCCGCATTCACCCGCGACCCCTCGTTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14519:719..4165+

>mRNA_L-elsbetiae_contig14519.3315.1 ID=mRNA_L-elsbetiae_contig14519.3315.1|Name=mRNA_L-elsbetiae_contig14519.3315.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1560bp|location=Sequence derived from alignment at L-elsbetiae_contig14519:719..4165+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGAGCTCACGCGTGAAGAACGGGTACGGGTTATGCACGTCCACTCT
CAGCGCTTCTGTGATCGGTCGATTCGATGGGAGCTCGGAAAAAAGATGGA
GAGCTCACGCGTGAAGAACGGGTACGGGTTATGCACGTCCACTCTCAGCG
CTTCTGTGATCGGTCGATTCGATGGGAGCTCGGAAAAAAGAAAGGCGAGC
AACCGAGCTTGGGACCACCTCTACAACGTGGACGCATCCTATCAGATGCG
CAAGCTGGAGGGGACCCACCCGGTGCGCAAGGTTCTTCATATGCAGAAGT
CCTTCCCTGAGACGGTGATGCGCCTGAACGACAAGGGCAGCAGCAACACA
AGTGGCACAACAGCATCCAGCCCCACCGCCCGTCCTATCAGCAGCAGATG
GCTCCGAAATCCATCTCCCAACAACAAAAATACGCCACTACAACCCTCAT
CATCGGTTCATATCTGCCACGGCACTAACGATGCCGGGCAGGGAGTGTCC
AATGATGCGACGGGAAGACGGATTGCCGACGAGTACCAGTTCTGCCACAA
TAAGATGGCGTACAACAGGACTAAGGGGAGAAAGGCGAGCAACCGAGCTT
GGGACCACCTCTACAACGTGGACGCATCCTATCAGATGCGCAAGCTGGAG
GGGACCCACCCGGTGCGCAAGGTTCTTCATATGCAGAAGTCCTTCCCTGA
GACGGTGATGCGCCTGAACGACAAGGGCAGCAGCAACACAAGTGGCACAA
CAGCATCCAGCCCCACCGCCCGTCCTATCAGCAGCAGATGGCTCCGAAAT
CCATCTCCCAACAACAAAAATACGCCACTACAACCCTCATCATCGGTTCA
TATCTGCCACGGCACTAACGATGCCGGGCAGGGAGTGTCCAATGATGCGA
CGGGAAGACGGATTGCCGACGAGTACCAGTTCTGCCACAATAAGATGGCG
TACAACAGGACTAAGGGGAGGGAAGCTGAGGTTGACGGTATTCTTACTGG
AAAGTCGCCACTCGAAAAAAAGTTACCCTTGTTCCCGGCGAAGGCTACAC
ACCAGCAGCTGTTGGGACTGGTTCAGCGGCCTAGTCACCCGGACAAGCCG
GCACCCGCGGTACCTAGGGAAAGAAAGTGGCTTGGGAACAACGTTGGTTG
GGAAGGGAAGCTGAGGTTGACGGTATTCTTACTGGAAAGTCGCCACTCGA
AAAAAAGTTACCCTTGTTCCCGGCGAAGGCTACACACCAGCAGCTGTTGG
GACTGGTTCAGCGGCCTAGTCACCCGGACAAGCCGGCACCCGCGGTACCT
AGGGAAAGAAAGTGGCTTGGGAACAACGTTGGTTGGGAAGGGAATCGAGG
GCTGCCCACTCCGCCAGCCGGCCGCGATGCCAAAGACGGAGAGGTTCACC
CGTGGCCGTCATCCCAATACCCCGCATTCACCCGCGACCCCTCGTTGTAG
GGAATCGAGGGCTGCCCACTCCGCCAGCCGGCCGCGATGCCAAAGACGGA
GAGGTTCACCCGTGGCCGTCATCCCAATACCCCGCATTCACCCGCGACCC
CTCGTTGTAG
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