mRNA_L-elsbetiae_contig14510.3313.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14510.3313.1
Unique NamemRNA_L-elsbetiae_contig14510.3313.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14510.3313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14510contigL-elsbetiae_contig14510:343..2056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size280
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14510.3313.1prot_L-elsbetiae_contig14510.3313.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14510 343..2056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.427997-CDS-L-elsbetiae_contig14510:342..4701622815582.427997-CDS-L-elsbetiae_contig14510:342..470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14510 343..470 -
1691682973.0553432-CDS-L-elsbetiae_contig14510:342..4701691682973.0553432-CDS-L-elsbetiae_contig14510:342..470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14510 343..470 -
1622815582.438276-CDS-L-elsbetiae_contig14510:781..8711622815582.438276-CDS-L-elsbetiae_contig14510:781..871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14510 782..871 -
1691682973.0709336-CDS-L-elsbetiae_contig14510:781..8711691682973.0709336-CDS-L-elsbetiae_contig14510:781..871Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14510 782..871 -
1622815582.448546-CDS-L-elsbetiae_contig14510:1995..20561622815582.448546-CDS-L-elsbetiae_contig14510:1995..2056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14510 1996..2056 -
1691682973.0831044-CDS-L-elsbetiae_contig14510:1995..20561691682973.0831044-CDS-L-elsbetiae_contig14510:1995..2056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14510 1996..2056 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14510.3313.1

>prot_L-elsbetiae_contig14510.3313.1 ID=prot_L-elsbetiae_contig14510.3313.1|Name=mRNA_L-elsbetiae_contig14510.3313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
FNSCLWGIHTSRRSTKCSPGALNISRWTDRWFPWSDGQHTATKLGGPAII
RLLLVASIGTCSRGRSRRPTFPPRTRHYYRFTPPPFETWAVSK
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mRNA from alignment at L-elsbetiae_contig14510:343..2056-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14510.3313.1 ID=mRNA_L-elsbetiae_contig14510.3313.1|Name=mRNA_L-elsbetiae_contig14510.3313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1714bp|location=Sequence derived from alignment at L-elsbetiae_contig14510:343..2056- (Laminarionema elsbetiae ELsaHSoW15)
TTCAATTCATGCCTGTGGGGCATACACACATCAAGAAGATCGACCAAGTG
TTCTCCAGGAGGTGTGTGTGTAGACTGTTCTTCCTCTCTGCATGTATTTT
AACATTCCAGTGTATTCAAAGACTTGGCAGCCGATTTTCTTCTTCCTCTA
CGGTGCCGCCCGTCCTTTCTTGAGTTTGTTTCTATTTAGTACTTTAATTA
TCGTATTCTTCCTTTCGTTGTCTGGTAAGAGATAATATACGCCTCACCAG
ATCGGTTCTAATCAAAAGTTGCACATTATTTTATGGAGTGCATACACACA
GCGGTCGAGCCTCAATGACGTACTGCTCCGGGACAAATACCCTTTCGTAG
TGTGATAGGGAGTGGGTAGTGTCTCCGAGATCGCACACGTGTGCTTTTGG
TGGCGTGGCTACAGCAAGTGCTTGTCTCGCCCCGCAATCGTGTTTGGGTA
TTTATTGGATTAGATATTATGTATGTCCTCTCGAGTTTTGCCGTGGTCTC
GTTGTGTCTTCCACCCTTAAGTGTAACCCCACGTTGAAGCTGGAGGACAT
CTAAGTGCATTTTATTGTTTCCATGTGTTGGACTGTCTAGCGTTACCTTC
CCTCTAGGGTTCGACATGTATAATGCTGCCGATGCGTACACTCCTTTTTT
TGGATTTGGCAGGCTACCATCACGGGATTTCCCGCATTATGCGTTGACTC
AGTTTAGGCAGATAAAAATGCCGATGTGTATTGTTTTGTTTCTCTCCAAT
TGCCTTTGGTATTATTTTCCGAGACTCCCGAGGGAAGAGGGAAATATCGA
CCTCGCAGAGCTACGTCCCCGCAGATGTATTCCTGCGCCAACTGGACCAT
GTACTCTGTCTGCCTGTTTGCTCAAAAACTACCTCTTCCCTCGGTAACAA
CAACCGAGGATTCTCCATCCTCCGGTGAAGGAAACTAACCTTACTGCAAG
CAGTAGGCTCGGATGACCAAGTCCCCAAATGGTACCCTAACCTTTCCTAC
GCCAAGCTATGTAGAACAGTAGTTAGCTACTAAAACAGGATCCTCTCCTT
TCCCCTACCTTCGAAATAAAAGGGGTGGGTGGGCGGGAAAAATACCCGAT
TTATTGGCGGCTCCTGCTCAACAACTCCTGCAAGCTTTGCTACGTGTCCA
CCTTGCTCCATTCCCGTGCACTACGCTCTCTACAGCGCTAAACATTTCTA
GGTGGACAGACAGGTGGTTTCCATGGAGTGATGGCCAGCACACGGCTACC
AAGCTGGGGGGTCCCGCAATAATACGTGAGTCTCCCTCCGGGTACCCTGA
AAAAACGCTAGTAGAGAGCCTCTGGAACTAGTACAAAAATGATCGGAAAC
ATCGCCTTGTTCCGCCGCAGGGTAGGTTGCTTTAACAAACCTACATTTAG
GACACGAAATTTGTTTTGTGTGGTGCCGGCAAACAATTCCTCACCGTCGG
CCGAGGGTACGATATGGTCTACTCAATTTCCCTTTACATTCAATTTGCTG
GATGACATTTTCCACACTCTGACTTATGGCTGCCTCGGTTGTACGTCGGT
TTTTTCGTGCAACATCCCCCCCCTCTCGTGTCCAAGGTTTGCTATTGGTT
GCAAGCATCGGAACCTGTTCACGCGGGCGAAGCAGGCGGCCGACATTTCC
GCCTCGTACAAGACATTATTACCGGTTCACACCACCACCCTTCGAAACCT
GGGCAGTTTCAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14510:343..2056-

>mRNA_L-elsbetiae_contig14510.3313.1 ID=mRNA_L-elsbetiae_contig14510.3313.1|Name=mRNA_L-elsbetiae_contig14510.3313.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig14510:343..2056- (Laminarionema elsbetiae ELsaHSoW15)
TTCAATTCATGCCTGTGGGGCATACACACATCAAGAAGATCGACCAAGTG
TTCTCCAGGAGTTCAATTCATGCCTGTGGGGCATACACACATCAAGAAGA
TCGACCAAGTGTTCTCCAGGAGCGCTAAACATTTCTAGGTGGACAGACAG
GTGGTTTCCATGGAGTGATGGCCAGCACACGGCTACCAAGCTGGGGGGTC
CCGCAATAATACCGCTAAACATTTCTAGGTGGACAGACAGGTGGTTTCCA
TGGAGTGATGGCCAGCACACGGCTACCAAGCTGGGGGGTCCCGCAATAAT
ACGTTTGCTATTGGTTGCAAGCATCGGAACCTGTTCACGCGGGCGAAGCA
GGCGGCCGACATTTCCGCCTCGTACAAGACATTATTACCGGTTCACACCA
CCACCCTTCGAAACCTGGGCAGTTTCAAAGGTTTGCTATTGGTTGCAAGC
ATCGGAACCTGTTCACGCGGGCGAAGCAGGCGGCCGACATTTCCGCCTCG
TACAAGACATTATTACCGGTTCACACCACCACCCTTCGAAACCTGGGCAG
TTTCAAAG
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