mRNA_L-elsbetiae_contig1029.335.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1029.335.1
Unique NamemRNA_L-elsbetiae_contig1029.335.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1029.335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1029contigL-elsbetiae_contig1029:19940..25472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size344
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1029.335.1prot_L-elsbetiae_contig1029.335.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1029 19940..25412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815257.8715618-CDS-L-elsbetiae_contig1029:19939..201681622815257.8715618-CDS-L-elsbetiae_contig1029:19939..20168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 19940..20168 -
1691682800.55993-CDS-L-elsbetiae_contig1029:19939..201681691682800.55993-CDS-L-elsbetiae_contig1029:19939..20168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 19940..20168 -
1622815257.8842697-CDS-L-elsbetiae_contig1029:25359..254121622815257.8842697-CDS-L-elsbetiae_contig1029:25359..25412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 25360..25412 -
1691682800.5725658-CDS-L-elsbetiae_contig1029:25359..254121691682800.5725658-CDS-L-elsbetiae_contig1029:25359..25412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1029 25360..25412 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815257.8956807-UTR-L-elsbetiae_contig1029:25412..254721622815257.8956807-UTR-L-elsbetiae_contig1029:25412..25472Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1029 25413..25472 -
1691682800.5835316-UTR-L-elsbetiae_contig1029:25412..254721691682800.5835316-UTR-L-elsbetiae_contig1029:25412..25472Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1029 25413..25472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1029.335.1

>prot_L-elsbetiae_contig1029.335.1 ID=prot_L-elsbetiae_contig1029.335.1|Name=mRNA_L-elsbetiae_contig1029.335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
MQGHRSTYFERTRRMQDSRRRQRRRRSAAAVLASIVALFFLLVLRAGPGG
GGADPGLRSAGGGDGVESRKSLPGLGVEGHGSQEPESSGGTAAA
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mRNA from alignment at L-elsbetiae_contig1029:19940..25472-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1029.335.1 ID=mRNA_L-elsbetiae_contig1029.335.1|Name=mRNA_L-elsbetiae_contig1029.335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5533bp|location=Sequence derived from alignment at L-elsbetiae_contig1029:19940..25472- (Laminarionema elsbetiae ELsaHSoW15)
GAACCTTCGAGGAATGGGGGGTAAGAGGAGGAGGCGAGGAATGCTGGCTT
GCAAGGATCGATGCAGGGCCATCGATCAACTTATTTCGAGAGAACGAGAC
GAATGCAGGACAGGTGAATGTTTGTGGGTTTGTTGGCAATTCAAATACAG
CCGTCTCGAAATGAAACTGCCCGTGATCATCCGCACACCAAACAGGCGGC
CAGTGACCCTGTACGGTATGGGCCAGGCGTTCTCTACCAAACGCGTGCGT
TCAGGACTGTTTTTTAAGACTCTGTTGCATGTACGTATGCACTGGTTGTG
GTTGTAGGGTGGACAGGTGGACAGCTATAGACCACATATTGTACGAAAAT
ATTTTGTTCCTTGTCTGCAGACCGGCAAGCGGCCGTGTCTACACACCTAG
GAGTACATCCTACATATGCATGCATATGAAATCCCAGGGCCACACCCTCT
TCTCCGCCGTCGGTGTGTGTGTCTAGTGTTCAGGGTAGACAAGATTACAG
TCCGGAATTTGCGTCGTACAATACAGCAAGGAGGGCCCAAAAAAAGCGTC
CCCATCTGTGCTATTGTAGTTACAGAGACTATTCAACGGAAGACCGTTGA
GTTGAGTCTCAATATACTCCGTAGTCTAGAGACCATGTTATGTATGCACA
TAATTAATGTAGTACTTGATCGTCTCTAAGTCTGCCCCACCTTAATGTTT
TCGCTGGAAGCATCATTTTCTCGGAGTTCCCCCCGGGGGGTTGAACATAC
AAATCAGTAAATCAAAAAGGGAGACTGTGTAGCCACACGAGAGCCGGGAC
TCCGTGGGTTTCGACCGGTATTTCAAAAAGTGACGTAATATTGGTTCAGT
AAAGTACGAAAAACACCTAGAATTTTCAAAGAATTCAACATCTGCGCTGC
AAAAACTCTACCAGGTCAACCGACGCAGTGATATTGGGTTCCGAAGTTTT
TTTTTTGCTCCTTTTCGGTGAGATCTCGCCGCTGAGTGCCGGTTTGGTGA
TGAAGAAAGAACCTGCCTGTAGCTCCTGTGTTTCTCGAGGGTGCAGAAAA
AAAAAAGGATGCGAATCGATGCTCCAGTAGCGGAGAGTGATTTATGTAGC
AGTGTTATTTGGAATCGTTTTCAAGGAGGCGCAGAAATGAGCTCTTTCTT
GACAAGTGCTCGCAGCTGAATACAGATTTTGCAACGCAATAAGCTCAGAC
TTGTAGCTCTGATACGTGTCGAATGTTGAGCAAGAAGAACCAAGCGAATC
GATGCTCTAGTGGTGGAGTACGAACGATTTAGGGCGTCAACAAACTGCTG
GAGTGGCCCTGCAGACGAAAACACGCAAAAAATAAAACTACCAAAAGCCC
CGCCCTATCAAGGCACACGCTCGCACCGGCGCGCTCGCCCTTGTAGCTCA
CAGTCACCACTCCAGACGAAACAAACCAAAGGGGAGAATATCCACTACTC
ATGACTAGCGTCGTTGCGGGTTTCAGACTATGGATCGCTCTGTGAGCGTC
AAATCAGAGCTTCCTTCGAACACGCATGGAGAGGCTCGGCGAGGCCAGCA
CCAGTAGACAGCAGCAGCTGTAGTTAGTGCCCTACAAGACGGCTGTCGGT
ATGTATTGGCAAGTGTTCTACACACCTGGGACCGTATACTTTCCGATGTG
TGCAGTTTCCTCGTGGATGGATGCTATCTGACTCTGCCGCCAAACTACCC
AAAATCGTGCTGTGGATCGGCGGACTGGCTCTCTCTCTCGTCCGAGCTCT
TCCAGTCCAGTACGAATGTCAAGCAATGCTGAGAGTTAGTGCCCTGCAAG
AAATGACGCCTAATTTTGTGTCCTAGTATGCAGCCAAGGACCTCATCCAC
ATGTCCTCTGACTCCTGGCTTGGATGACTTTCTCCAAGCTAAGCTTTCGA
CCTCTCCGTATCTGTGAAGATCTGTGTTTTTTTACGTTCCAGGAAGTCCC
TCCCAAAACCCCCAATCCCGTATGCGCCCCCTTGAAAGCCGAATTCCAAT
AACCCTAGAGTTATATAAAACTCGAACTATTGGCAATATCCAGCGGAAGA
TCCATAATTTACCTCAATTCGAGTTTTATATCAGTGCAAATCAGAGGGGT
ATGGAAGCAAGCTATTGCAATAGTTTTGAAAAATATTACAACAGGACTCA
GGAGCCGCAAAGCAATAGAAATCACAGCCCCGTGCTCTTCCTGCGGCATA
CCGCGCAAAGCCTTCGGCGCGCCCCCCCAAAAAAACTTTTTGAAACTTTG
GCGCGCTCTGCACTTTCCGGTCCGCGCTTTTCAGTAGAGTGGCGTAGCCA
GTCAGTGAAGGTCGTGTCGTGCCTGCATACCACGTATGATGATGTCTTCT
TCCCGTCAGTACTCGTACACCGCGCGTGTTGTGTTTTCGGTTTCTTTTGA
AAGCCTCAATTCCAACATGGCAGCTTGCGTAGACACGCGTATGCTCCTTC
TTCCTCCTCCTATGTATATGTCGATTGAAAGAAGCTGAACACCGAAAGAT
TTAGGTTGTTTTTTCTGCTCGCTTCGCCAAATATTACGTCTCTGTATAGA
ATACCGTTTGAACCCCATATCGAGTCTTTGCTCTAGTATGGGTTAGGTTC
CATCTTTGATTCTTTGTTTTATTTTTAGAATGAATGTGGAATAGATAGAG
ATGTCACCGCACCCATTTCTACGTCGATCCCGGGATCTATCTCTATTAGT
AGTGAGGCGAATGAATACGACGATGTCCTCTGTTCTTGCTGCCGTTCACG
TGCACTACTGTTGTTCGCGTTGATGTTTTCGAAATGTATTTTTTGCGTTC
TCTCGACCGCGATCATCAACACAACTAGATACAGTAGTACATACATTACG
TACAAGGGGTCCAGGCAGCAGCACCTTCAGTCAAGGGTTTCTTGGAGCCC
TTCATGGGAGCGTTCGTTTACAAAACATGTAAAAATATGTAACTCAGCTT
GTGTTACACTCGCACTCGGTTGATTTCGCACCCTACGTCCTGCATACAGT
AGTTGGTACAGTCCCGCATGTTTCGCCCCTAAGATCCCAGATTTAGCAAC
ATTCGAGTTTTATATATCCGAGGGGAAGTTGCCCAAGTTTACCTTCCCTC
TAATCCGAACCAAAATTGCTGGCCGGACCAACATTTGAGTTTGATATAAC
TCTACTGTTAGGGCGATTCGCAACTGTGCCGCGTGGCCTGCAGTCAAGAA
CACGCTCATACAACACCCCCCCCACCAAAAGCCTCTTCGGCACGCACTCG
CATCGTGCGCCAGCTCTAGGAGCGCGTATGCTCCGTACCGGACGATCCAA
AGCACAGAATATACAGCCTATTGCTCATAGCTAGTGTCGGTGCAGATTTT
AGACCCCGAATCGCTCTGTGAGAGTCGAATTAAAGCTGCCTTCCAACACG
CATTAGTACGCTGGCCAGGCCAGCAGCAGCAGCAGCAGACGGCAATAGCA
AGAGCTAGTGCCCTGCAACGAGTTAGCTACTGTCAGGGGGGTGATCTGCA
CACCTGACGCCCTGCTCTTGCCGATGTGTGTAGTTTCCTGGTGGATCTCG
ATGCTTTGTTCGCGCAAAAAATCATGCTGCAGTCTGTCTCCCAACTGACT
CTCTCTCTCGCCTTCGTCTCTCTCTTTGTCTACTTTGTGCGATACCAAGA
ATCATGGCCCTGAAAAAACTACCACTCAAACGTTTGGCCACGTCTATAGT
CACACATCTCAACTACACAGTAGCCTCAAAGTCGCGTTTTGGGACACTTT
CTGCAAGCTAAGATGTCCGCTTCTCCGTGCCTGGGTGTACTGAAGGACCT
ATTTATGTTTCGCTGTCCCAGGATGTCCCGCCTCAGAAAATCCAACGCGG
TACATATGTGCCTCCTTAAAACCAGGAGTCGAATAACACTGAACGTGTAT
ATCTTCCCCGGGGAGAAACCTAACGTGATGGGGATTGTTCCTTTCACAAA
AAAAAATCCCCTTCCTCGCGGGGTGAACTCAGAAGAGTTTACGGTAACTC
CGGAGTAAGATATGTCCGCTTCCTTGGAAATGTAGTAAATGGGACTCACG
CCCCCCCTACCTTTCAAGCGGCAGTATGTGGTGGCAGCAGAAGTTCGAAG
CTGATGTCTTATCATACTCCTATTCGGCTAAATAAAACATACCTTATACA
TACATATCACGTCAACTTTCTTGGGTCGAATCAACTCGGACGACCGACGA
ACAGCAGCTGCGGCTAATTCTCGAAGGCGGGGCGTAATCAGATATTCCCT
GATCGTGGTGGTCTCCGAGTGCGCACTCGGAGTAATGATGTTGACTGTTG
TCGTGTTCGTGCTCTCTCGGAGTACATACGTTCGCATGTAGTTTGTGTTG
ATATTTTGTATTGTGTTGCCTCGTCTCTTCAACCGTCAGTCTTTGGAGGG
GCTCTGGATAGCATAGGGTTAGATTTTTTACGGTCAAACAATCAAGTCTT
TGGAGGGGCTCTGCATAACATAAAGTTAGGCTTTTTACGGTCAACAACCA
AGTCTTTGGAGGGGCTCTGCATAACATAGGGTTAGGTTTTTTACGGTCAA
CAATCAAGTCTTTGGAGGGGCTCTGCATAACATACAATGCAAGTTAATGC
ATTCGATCGAATGAACGTTTGGTCGCTTATTTCAAGTTTTTTTGAGTTTT
TTTGTTTTTTTCGCTTAGGTTAAAACAAGGCAAAGAAGATCGCGGCTTCG
CCGCTCCGCGGCTCGTTAAAAACCCGATCTTGAGTGTTTGGCTCGGGTGT
TTGACCCCGTCGTGACTCATGTATTGGGGATGGGCGGGTCGATCCGACGC
CGAATCAAAAGGATACGTAAATCTAGAATCACTTGGTATGTTGATTAATT
TCCCGTAAAATGAGTGGGTTTGTTGTGGCAGTCGCACGTCGAATGCCCCA
CCTACGTGAGGCTAGTACTCCATCTGTACTTACAATACTTTGAAGTTGTT
GTAGTAAACGCCTTGCGCGGTTAGTGGCCGTTGTACGTGCAGTGCCCTCT
GCGGGCCAGCGCCTAGAATCCAGCTCATTTGCCCCCCCCGTGGCCGATTA
CAGTATTTAGCGTAGATCCGCCCTTTCCTGTCGAATGGATACCATACGAA
CCCCCCTTTGCCCCGCTTTGTATATCCCCACGGACCACCTCCTTGCCTTG
CTCCGTTTTTCTTTTCCTCGATCACACCGCCTTCAACGAAACGGCCGCCA
CACCCAAACCACGACCCGCCAACGCTCAACCGCGGGCGCCACAACCACCA
CCAAAACTAACGCCACCAGCCACCCCCACCCTTGTGACTTGCACCCTGGT
GCAGCCGCAGGCGGCAGCGGCGACGCCGCTCGGCGGCCGCGGTGCTCGCC
AGCATCGTAGCGCTGTTCTTCCTGCTCGTCCTTCGAGCGGGACCCGGCGG
CGGCGGTGCCGACCCCGGCCTCAGAAGTGCAGGCGGCGGCGACGGCGTGG
AGAGCAGAAAGTCATTGCCAGGCCTTGGTGTAGAGGGCCACGGGAGTCAG
GAGCCCGAGTCTAGTGGGGGGACGGCGGCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1029:19940..25472-

>mRNA_L-elsbetiae_contig1029.335.1 ID=mRNA_L-elsbetiae_contig1029.335.1|Name=mRNA_L-elsbetiae_contig1029.335.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig1029:19940..25472- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGGCCATCGATCAACTTATTTCGAGAGAACGAGACGAATGCAGGA
CAGATGCAGGGCCATCGATCAACTTATTTCGAGAGAACGAGACGAATGCA
GGACAGCCGCAGGCGGCAGCGGCGACGCCGCTCGGCGGCCGCGGTGCTCG
CCAGCATCGTAGCGCTGTTCTTCCTGCTCGTCCTTCGAGCGGGACCCGGC
GGCGGCGGTGCCGACCCCGGCCTCAGAAGTGCAGGCGGCGGCGACGGCGT
GGAGAGCAGAAAGTCATTGCCAGGCCTTGGTGTAGAGGGCCACGGGAGTC
AGGAGCCCGAGTCTAGTGGGGGGACGGCGGCGGCGCCGCAGGCGGCAGCG
GCGACGCCGCTCGGCGGCCGCGGTGCTCGCCAGCATCGTAGCGCTGTTCT
TCCTGCTCGTCCTTCGAGCGGGACCCGGCGGCGGCGGTGCCGACCCCGGC
CTCAGAAGTGCAGGCGGCGGCGACGGCGTGGAGAGCAGAAAGTCATTGCC
AGGCCTTGGTGTAGAGGGCCACGGGAGTCAGGAGCCCGAGTCTAGTGGGG
GGACGGCGGCGGCG
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