mRNA_L-elsbetiae_contig14504.3310.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14504.3310.1
Unique NamemRNA_L-elsbetiae_contig14504.3310.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14504.3310.1 vs. uniprot
Match: D7G616_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G616_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 3.150e-41
Identity = 86/109 (78.90%), Postives = 91/109 (83.49%), Query Frame = 1 
Query:  133 ARKREAESTALRRRLRLLWKTLCGLLCLGTAVSTAVTVVAAVELRRHLGRSFFALPLSVHLLLDALMALTPLLAARADGEGEPPPPIPTSQVEFQRQLRAGRTIAQARR 459
            ARKRE +S  LRR LRLLWKTLCGLLCLG  VS AVT+VAA+ELRRHLGRSFFALPL+VHLLLDAL+AL PLL AR DG        PTSQVEFQRQLRAGRTIAQARR
Sbjct:   61 ARKRETQSALLRRHLRLLWKTLCGLLCLGAVVSAAVTLVAAIELRRHLGRSFFALPLAVHLLLDALLALIPLLVARGDGXXXXXXXGPTSQVEFQRQLRAGRTIAQARR 169
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14504.3310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G616_ECTSI3.150e-4178.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14504contigL-elsbetiae_contig14504:2624..4157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue6.7e-36
Seed eggNOG ortholog2880.D7G616
Hectar predicted targeting categorysignal anchor
EggNOG OGs296UM@1,2RDTX@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-11_004740.1
Exons3
Model size485
Cds size483
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14504.3310.1prot_L-elsbetiae_contig14504.3310.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14504 2625..4157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.1837204-CDS-L-elsbetiae_contig14504:2624..27021622815582.1837204-CDS-L-elsbetiae_contig14504:2624..2702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14504 2625..2702 -
1691682972.8948736-CDS-L-elsbetiae_contig14504:2624..27021691682972.8948736-CDS-L-elsbetiae_contig14504:2624..2702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14504 2625..2702 -
1622815582.195029-CDS-L-elsbetiae_contig14504:3260..35221622815582.195029-CDS-L-elsbetiae_contig14504:3260..3522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14504 3261..3522 -
1691682972.910062-CDS-L-elsbetiae_contig14504:3260..35221691682972.910062-CDS-L-elsbetiae_contig14504:3260..3522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14504 3261..3522 -
1622815582.2094476-CDS-L-elsbetiae_contig14504:4014..41571622815582.2094476-CDS-L-elsbetiae_contig14504:4014..4157Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14504 4015..4157 -
1691682972.9213398-CDS-L-elsbetiae_contig14504:4014..41571691682972.9213398-CDS-L-elsbetiae_contig14504:4014..4157Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14504 4015..4157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14504.3310.1

>prot_L-elsbetiae_contig14504.3310.1 ID=prot_L-elsbetiae_contig14504.3310.1|Name=mRNA_L-elsbetiae_contig14504.3310.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=161bp
NDGGYGDDREDEDERRGGDGAGEEDKAPLLATDGDARSERRARRARKREA
ESTALRRRLRLLWKTLCGLLCLGTAVSTAVTVVAAVELRRHLGRSFFALP
LSVHLLLDALMALTPLLAARADGEGEPPPPIPTSQVEFQRQLRAGRTIAQ
ARRRPQDDDGD
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mRNA from alignment at L-elsbetiae_contig14504:2624..4157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14504.3310.1 ID=mRNA_L-elsbetiae_contig14504.3310.1|Name=mRNA_L-elsbetiae_contig14504.3310.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1534bp|location=Sequence derived from alignment at L-elsbetiae_contig14504:2624..4157- (Laminarionema elsbetiae ELsaHSoW15)
AACGACGGCGGGTACGGCGATGACAGGGAAGACGAAGACGAGCGAAGAGG
TGGAGACGGGGCAGGAGAAGAAGACAAGGCGCCTCTGCTGGCGACCGACG
GCGACGCGCGATCCGAGAGGCGGGCCAGACGGGCCCGAAAGCGGTAAGTT
CAAGTGTCATAGGCACGGCTGGACGTTGCGGTCCCCGCAAGGCGTGGTAG
TAGAGTTCCTGCGCGCGGGGTGGAGGGTACCCTCCTGGTGCTCGCGACAC
CGACGCTGCCGCTGCTCATCAGCACGCTCAGCAGTAGTGACACCTACATA
CCTCAAGAGGGGGCGAACATAATAGAGAGGGTAGAGGGGTACATTTGAAG
AGGTGTTCATACAAGCATGAAACCTTCGTTCGGCCGATTCTTGCGATCTA
CATGCTGCCATATGACACAAGGGCACCTTTACAACTTCGAGGGGTGAGCA
GAGCCGGAGCCCCCTTTCGCGCAAACACGGAACGGCAAACGTGCTGGCGT
CCGCGCGTGCGGCCACCGTTTTTGTTGCGCACTCGACAAGCGCCACCGCT
TGCTGCCGCTAACCTCAACCCAACCGCGCAATCGCACGCACAAGCTCATC
AAACACGACGCCAACCAAAAAAACAACAAAAACAGGGAGGCAGAGTCGAC
CGCTCTTCGGCGCCGCCTCCGGCTCCTGTGGAAAACCCTCTGCGGCTTGC
TGTGCCTCGGCACCGCCGTCTCCACGGCCGTGACCGTCGTGGCCGCGGTC
GAGCTGCGCCGCCACCTGGGCCGGTCCTTCTTCGCCCTCCCTCTGTCGGT
GCACCTGCTGCTGGACGCGCTGATGGCGCTGACCCCGCTGCTAGCGGCCA
GGGCGGACGGCGAGGGGGAGCCCCCGCCGCCCATTCCTACTTCTCAGGTG
CTGCTCCTCCTCCTGAAATTAGGAAAGCTGTGCCAATGTTTCTATGTAGG
CAGTGTTTTTTTGTGGTGTTTCATTCCGCGGGCGGGTTGTTTCTTGCTCG
CGAGAGGCGGGCGGGGTCGGGATTATGCGTGGCCGGAGTCTGCATCTGCT
GTAAGGAAGGGAGTGTGGGGGGGGGGGGGGCACTTTTTTTTCGGTAGAGT
CATCCTCACCCCACGCTCCCAACCACGTGTCTATCCATACCACAGTAATA
TTCGAGAGATAGCCGTGAGCGGCGCAGAACGCAAGGGCAAAACGACGACG
CCGTCAACCAATACAGATGGCGCCACCACTTTTAAGAATTTGGTACAGAG
TTAAGAACTTCGGAGGCTCACTTAAGACGCCCTGCGGGATAAGAACCCAT
CCACTAGATGAAACCTATTCATACCTTGCCCCACAGAAAAATAAGAACCT
GTTTTTATTTCCAAGAACCGAGCTTCGGGCGAAACCAAAGGTTCTTGTGT
AAACGGCGGCGCCATCTGTGTCTCGTCTGAGCACGTCATGTACGCGTGCA
AAAAGGTGGAGTTTCAGAGACAGCTCCGGGCCGGCCGGACCATCGCTCAG
GCGCGACGGCGGCCCCAGGACGACGACGGCGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14504:2624..4157-

>mRNA_L-elsbetiae_contig14504.3310.1 ID=mRNA_L-elsbetiae_contig14504.3310.1|Name=mRNA_L-elsbetiae_contig14504.3310.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=966bp|location=Sequence derived from alignment at L-elsbetiae_contig14504:2624..4157- (Laminarionema elsbetiae ELsaHSoW15)
AACGACGGCGGGTACGGCGATGACAGGGAAGACGAAGACGAGCGAAGAGG
TGGAGACGGGGCAGGAGAAGAAGACAAGGCGCCTCTGCTGGCGACCGACG
GCGACGCGCGATCCGAGAGGCGGGCCAGACGGGCCCGAAAGCGAACGACG
GCGGGTACGGCGATGACAGGGAAGACGAAGACGAGCGAAGAGGTGGAGAC
GGGGCAGGAGAAGAAGACAAGGCGCCTCTGCTGGCGACCGACGGCGACGC
GCGATCCGAGAGGCGGGCCAGACGGGCCCGAAAGCGGGAGGCAGAGTCGA
CCGCTCTTCGGCGCCGCCTCCGGCTCCTGTGGAAAACCCTCTGCGGCTTG
CTGTGCCTCGGCACCGCCGTCTCCACGGCCGTGACCGTCGTGGCCGCGGT
CGAGCTGCGCCGCCACCTGGGCCGGTCCTTCTTCGCCCTCCCTCTGTCGG
TGCACCTGCTGCTGGACGCGCTGATGGCGCTGACCCCGCTGCTAGCGGCC
AGGGCGGACGGCGAGGGGGAGCCCCCGCCGCCCATTCCTACTTCTCAGGG
AGGCAGAGTCGACCGCTCTTCGGCGCCGCCTCCGGCTCCTGTGGAAAACC
CTCTGCGGCTTGCTGTGCCTCGGCACCGCCGTCTCCACGGCCGTGACCGT
CGTGGCCGCGGTCGAGCTGCGCCGCCACCTGGGCCGGTCCTTCTTCGCCC
TCCCTCTGTCGGTGCACCTGCTGCTGGACGCGCTGATGGCGCTGACCCCG
CTGCTAGCGGCCAGGGCGGACGGCGAGGGGGAGCCCCCGCCGCCCATTCC
TACTTCTCAGGTGGAGTTTCAGAGACAGCTCCGGGCCGGCCGGACCATCG
CTCAGGCGCGACGGCGGCCCCAGGACGACGACGGCGACGTGGAGTTTCAG
AGACAGCTCCGGGCCGGCCGGACCATCGCTCAGGCGCGACGGCGGCCCCA
GGACGACGACGGCGAC
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