mRNA_L-elsbetiae_contig1450.3307.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1450.3307.1
Unique NamemRNA_L-elsbetiae_contig1450.3307.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1450.3307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1450contigL-elsbetiae_contig1450:8834..10538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size745
Cds size723
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1450.3307.1prot_L-elsbetiae_contig1450.3307.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1450 8856..10538 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.9926674-UTR-L-elsbetiae_contig1450:8833..88551622815581.9926674-UTR-L-elsbetiae_contig1450:8833..8855Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1450 8834..8855 +
1691682972.8167887-UTR-L-elsbetiae_contig1450:8833..88551691682972.8167887-UTR-L-elsbetiae_contig1450:8833..8855Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1450 8834..8855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.0094702-CDS-L-elsbetiae_contig1450:8855..89641622815582.0094702-CDS-L-elsbetiae_contig1450:8855..8964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1450 8856..8964 +
1691682972.8276944-CDS-L-elsbetiae_contig1450:8855..89641691682972.8276944-CDS-L-elsbetiae_contig1450:8855..8964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1450 8856..8964 +
1622815582.0251377-CDS-L-elsbetiae_contig1450:9924..105381622815582.0251377-CDS-L-elsbetiae_contig1450:9924..10538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1450 9925..10538 +
1691682972.8360755-CDS-L-elsbetiae_contig1450:9924..105381691682972.8360755-CDS-L-elsbetiae_contig1450:9924..10538Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1450 9925..10538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1450.3307.1

>prot_L-elsbetiae_contig1450.3307.1 ID=prot_L-elsbetiae_contig1450.3307.1|Name=mRNA_L-elsbetiae_contig1450.3307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
MVISTMRGNIVLLVLVRLVASPVRLQAATTNAIFEAGHSSSSSSSSSRSR
DGPSREQEPYVPSAAASLSREKSSLAAAAPAAAAADDSPAVQPPPSSGDA
KTGVFAQPMPTKDEYQQRNSCQRPIGGGGDSGGSNSDSGSGSGDDDDGGR
GREGDPRPNNNRAGDAAAGAVVADASASADAEGSAAQGGSTGPIPLALRP
VSLAERAKEKVAKTWSSVEVGVERAIHVRREVKTVFSSELE
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mRNA from alignment at L-elsbetiae_contig1450:8834..10538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1450.3307.1 ID=mRNA_L-elsbetiae_contig1450.3307.1|Name=mRNA_L-elsbetiae_contig1450.3307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1705bp|location=Sequence derived from alignment at L-elsbetiae_contig1450:8834..10538+ (Laminarionema elsbetiae ELsaHSoW15)
GCTTTGCTCTCCTCGCTAGCACATGGTAATCAGTACAATGCGAGGAAACA
TAGTCCTTCTCGTTCTTGTCCGGCTGGTGGCTTCCCCCGTCAGATTGCAG
GCAGCGACTACGAATGCTATCTTCGAAGCAGGTGAATAAGGTGCTGTCTT
GTATGTGCAAAGCAAGCAGCGCGGACCGCCGCTGGAAGCGTATTTCCTGC
TGCGCTGGGAACAACGTGCAGCACAGCATTACCACTCCCTGACCACTATT
CATCGTGTGAACAAGTTGGTCAAGCGGGTGTGCTCCGCCAGCTACTGCTG
TTCTAATATCAAAAGATAAAACACGTGGATGTGCAGGAGGCTGTTTCCCT
CGAGACTGGCTCTCTTCCAGACTTCTTCAGCGCCACCTTTTGCTTCAACG
CCCCGCTTGAGTAAAATGGCGTCACGTCATGGGACAGCCGCCAGCACAGC
TTCTACTCGGCAATTAGCTTGGTCGTTTGATGTACGTACGATGGTATGGC
CTGGTGCAGTTGACACGAGGAGCATAACTGCAGTTATGTTACCCTTCGGC
ACGCGCGGGAAACCGGTTGTAACCCGCCTGCCTCTTTCACCGCTTTTCCC
CTGAACGTTCTACACAACGCAACGGCATTCGCATCTAACGACACAACAAC
GGTTTCTCCGGGCGCGTAGTTTCCCAGCACGGTTGGTTCTTCATGTGCTA
CTTTCGATTGCGGGTTTTCAGTATTTTATCCTCCTCTACATATACCTATC
TAGACTATCCTAGATAAGTTGAGGATATGTATCTCTCGCCTAGTATCTTA
GATTGTCTATGTGTAGTCTACCTGTAGATATTGAACAGGTTTAAAAAATA
ACGGCGCGTGCATGTATCTAAACGTAGAAAATGTGTATCTACTGCTGTAG
CTTAGCTGAAAGTTGGAGGAGTTCACAAGGAATTGAGGTCGAGAGGTAGT
CTATGCCGTGTCTTCCTTTTTTTTCACCGGCAAAAAAAAAAAAAAAAGTA
TCTATAAACATAATGCTTGTACAGCATATTTAGAAAATGATATATATATC
TCCCCTCCGCTCTTTGGTTTCTCAATGCGCGACGCAAACAGGGCACAGCA
GCAGCAGCAGCAGCAGCAGCAGCCGCAGCCGCGATGGACCCTCTCGCGAG
CAGGAACCGTACGTGCCAAGCGCAGCGGCTTCCCTGTCTCGCGAAAAAAG
CTCGCTGGCGGCGGCAGCCCCCGCCGCCGCCGCCGCCGACGACAGCCCCG
CTGTTCAACCACCGCCTAGTAGCGGCGACGCCAAGACCGGTGTCTTTGCG
CAACCCATGCCCACGAAAGACGAATACCAACAGCGCAACTCTTGTCAACG
ACCAATCGGCGGCGGCGGCGACAGCGGCGGCAGCAACAGCGACTCCGGCA
GCGGGAGCGGTGACGACGACGATGGCGGCCGCGGCCGCGAAGGGGACCCC
CGACCGAACAACAACCGCGCAGGCGACGCTGCTGCTGGCGCTGTCGTCGC
CGATGCCAGCGCCAGCGCCGACGCCGAAGGTTCGGCGGCTCAGGGGGGCT
CGACCGGCCCGATACCGCTGGCGCTTCGGCCGGTGTCGCTGGCGGAGCGG
GCCAAGGAAAAGGTCGCCAAGACCTGGAGCAGCGTGGAGGTGGGGGTGGA
GCGGGCTATCCACGTCCGCCGGGAGGTGAAGACCGTCTTTTCTTCGGAGC
TGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1450:8834..10538+

>mRNA_L-elsbetiae_contig1450.3307.1 ID=mRNA_L-elsbetiae_contig1450.3307.1|Name=mRNA_L-elsbetiae_contig1450.3307.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig1450:8834..10538+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTAATCAGTACAATGCGAGGAAACATAGTCCTTCTCGTTCTTGTCCG
GCTGGTGGCTTCCCCCGTCAGATTGCAGGCAGCGACTACGAATGCTATCT
TCGAAGCAGATGGTAATCAGTACAATGCGAGGAAACATAGTCCTTCTCGT
TCTTGTCCGGCTGGTGGCTTCCCCCGTCAGATTGCAGGCAGCGACTACGA
ATGCTATCTTCGAAGCAGGGCACAGCAGCAGCAGCAGCAGCAGCAGCAGC
CGCAGCCGCGATGGACCCTCTCGCGAGCAGGAACCGTACGTGCCAAGCGC
AGCGGCTTCCCTGTCTCGCGAAAAAAGCTCGCTGGCGGCGGCAGCCCCCG
CCGCCGCCGCCGCCGACGACAGCCCCGCTGTTCAACCACCGCCTAGTAGC
GGCGACGCCAAGACCGGTGTCTTTGCGCAACCCATGCCCACGAAAGACGA
ATACCAACAGCGCAACTCTTGTCAACGACCAATCGGCGGCGGCGGCGACA
GCGGCGGCAGCAACAGCGACTCCGGCAGCGGGAGCGGTGACGACGACGAT
GGCGGCCGCGGCCGCGAAGGGGACCCCCGACCGAACAACAACCGCGCAGG
CGACGCTGCTGCTGGCGCTGTCGTCGCCGATGCCAGCGCCAGCGCCGACG
CCGAAGGTTCGGCGGCTCAGGGGGGCTCGACCGGCCCGATACCGCTGGCG
CTTCGGCCGGTGTCGCTGGCGGAGCGGGCCAAGGAAAAGGTCGCCAAGAC
CTGGAGCAGCGTGGAGGTGGGGGTGGAGCGGGCTATCCACGTCCGCCGGG
AGGTGAAGACCGTCTTTTCTTCGGAGCTGGAGGGCACAGCAGCAGCAGCA
GCAGCAGCAGCAGCCGCAGCCGCGATGGACCCTCTCGCGAGCAGGAACCG
TACGTGCCAAGCGCAGCGGCTTCCCTGTCTCGCGAAAAAAGCTCGCTGGC
GGCGGCAGCCCCCGCCGCCGCCGCCGCCGACGACAGCCCCGCTGTTCAAC
CACCGCCTAGTAGCGGCGACGCCAAGACCGGTGTCTTTGCGCAACCCATG
CCCACGAAAGACGAATACCAACAGCGCAACTCTTGTCAACGACCAATCGG
CGGCGGCGGCGACAGCGGCGGCAGCAACAGCGACTCCGGCAGCGGGAGCG
GTGACGACGACGATGGCGGCCGCGGCCGCGAAGGGGACCCCCGACCGAAC
AACAACCGCGCAGGCGACGCTGCTGCTGGCGCTGTCGTCGCCGATGCCAG
CGCCAGCGCCGACGCCGAAGGTTCGGCGGCTCAGGGGGGCTCGACCGGCC
CGATACCGCTGGCGCTTCGGCCGGTGTCGCTGGCGGAGCGGGCCAAGGAA
AAGGTCGCCAAGACCTGGAGCAGCGTGGAGGTGGGGGTGGAGCGGGCTAT
CCACGTCCGCCGGGAGGTGAAGACCGTCTTTTCTTCGGAGCTGGAG
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