mRNA_L-elsbetiae_contig10289.330.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10289.330.1
Unique NamemRNA_L-elsbetiae_contig10289.330.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10289.330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10289contigL-elsbetiae_contig10289:3039..3406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size370
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815257.8237054-UTR-L-elsbetiae_contig10289:3038..30491622815257.8237054-UTR-L-elsbetiae_contig10289:3038..3049Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10289 3039..3049 +
1691682800.5161006-UTR-L-elsbetiae_contig10289:3038..30491691682800.5161006-UTR-L-elsbetiae_contig10289:3038..3049Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10289 3039..3049 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815257.8352668-CDS-L-elsbetiae_contig10289:3049..34061622815257.8352668-CDS-L-elsbetiae_contig10289:3049..3406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10289 3050..3406 +
1691682800.5445874-CDS-L-elsbetiae_contig10289:3049..34061691682800.5445874-CDS-L-elsbetiae_contig10289:3049..3406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10289 3050..3406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10289.330.1prot_L-elsbetiae_contig10289.330.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10289 3050..3406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10289.330.1

>prot_L-elsbetiae_contig10289.330.1 ID=prot_L-elsbetiae_contig10289.330.1|Name=mRNA_L-elsbetiae_contig10289.330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
MKKEASKQTTPCCNAQTKYELVHNKELSGRLSISRCRHDQWRSVLKTKQI
PGQWSECRRESSSEVTVRSLCPITTPPPCSDFPRGPPVLSHTSRDRGVYQ
AQLADARAIEQSPRSHPSL
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mRNA from alignment at L-elsbetiae_contig10289:3039..3406+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10289.330.1 ID=mRNA_L-elsbetiae_contig10289.330.1|Name=mRNA_L-elsbetiae_contig10289.330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=368bp|location=Sequence derived from alignment at L-elsbetiae_contig10289:3039..3406+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAAAGGAACATGAAGAAGGAAGCATCGAAACAAACTACTCCGTGCTGT
AATGCGCAAACTAAATATGAACTGGTACATAACAAGGAGTTGAGTGGGCG
GTTATCTATCTCCCGCTGCAGGCACGACCAGTGGCGCTCTGTCTTAAAGA
CAAAACAAATACCTGGTCAATGGTCAGAATGCCGCAGGGAAAGTTCATCA
GAAGTAACTGTCCGCTCCTTGTGCCCCATCACCACCCCACCCCCATGTTC
TGACTTCCCACGGGGCCCCCCTGTTCTGTCTCATACCTCTAGGGACCGGG
GAGTCTACCAAGCGCAGCTCGCCGACGCCCGCGCTATCGAGCAGAGCCCT
AGAAGCCACCCAAGTCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10289:3039..3406+

>mRNA_L-elsbetiae_contig10289.330.1 ID=mRNA_L-elsbetiae_contig10289.330.1|Name=mRNA_L-elsbetiae_contig10289.330.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig10289:3039..3406+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGAAGGAAGCATCGAAACAAACTACTCCGTGCTGTAATGCGCAAAC
TAAATATGAACTGGTACATAACAAGGAGTTGAGTGGGCGGTTATCTATCT
CCCGCTGCAGGCACGACCAGTGGCGCTCTGTCTTAAAGACAAAACAAATA
CCTGGTCAATGGTCAGAATGCCGCAGGGAAAGTTCATCAGAAGTAACTGT
CCGCTCCTTGTGCCCCATCACCACCCCACCCCCATGTTCTGACTTCCCAC
GGGGCCCCCCTGTTCTGTCTCATACCTCTAGGGACCGGGGAGTCTACCAA
GCGCAGCTCGCCGACGCCCGCGCTATCGAGCAGAGCCCTAGAAGCCACCC
AAGTCTTATGAAGAAGGAAGCATCGAAACAAACTACTCCGTGCTGTAATG
CGCAAACTAAATATGAACTGGTACATAACAAGGAGTTGAGTGGGCGGTTA
TCTATCTCCCGCTGCAGGCACGACCAGTGGCGCTCTGTCTTAAAGACAAA
ACAAATACCTGGTCAATGGTCAGAATGCCGCAGGGAAAGTTCATCAGAAG
TAACTGTCCGCTCCTTGTGCCCCATCACCACCCCACCCCCATGTTCTGAC
TTCCCACGGGGCCCCCCTGTTCTGTCTCATACCTCTAGGGACCGGGGAGT
CTACCAAGCGCAGCTCGCCGACGCCCGCGCTATCGAGCAGAGCCCTAGAA
GCCACCCAAGTCTT
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