mRNA_L-elsbetiae_contig1446.3285.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1446.3285.1
Unique NamemRNA_L-elsbetiae_contig1446.3285.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1446.3285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1446contigL-elsbetiae_contig1446:335..1173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size254
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.7277443-CDS-L-elsbetiae_contig1446:334..4111622815579.7277443-CDS-L-elsbetiae_contig1446:334..411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 335..411 -
1691682971.322921-CDS-L-elsbetiae_contig1446:334..4111691682971.322921-CDS-L-elsbetiae_contig1446:334..411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 335..411 -
1622815579.7426906-CDS-L-elsbetiae_contig1446:998..11731622815579.7426906-CDS-L-elsbetiae_contig1446:998..1173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 999..1173 -
1691682971.3336256-CDS-L-elsbetiae_contig1446:998..11731691682971.3336256-CDS-L-elsbetiae_contig1446:998..1173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1446 999..1173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1446.3285.1prot_L-elsbetiae_contig1446.3285.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1446 335..1173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1446.3285.1

>prot_L-elsbetiae_contig1446.3285.1 ID=prot_L-elsbetiae_contig1446.3285.1|Name=mRNA_L-elsbetiae_contig1446.3285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
RAWSSSLPRGRHAGTGVGGLRGGRDDGQGSPGGGGSRGRLNEADADLSDI
KATMRRIDGARAAGYTTINSFGLGSPSTASAGPT
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mRNA from alignment at L-elsbetiae_contig1446:335..1173-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1446.3285.1 ID=mRNA_L-elsbetiae_contig1446.3285.1|Name=mRNA_L-elsbetiae_contig1446.3285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=839bp|location=Sequence derived from alignment at L-elsbetiae_contig1446:335..1173- (Laminarionema elsbetiae ELsaHSoW15)
AGGGCATGGTCTTCGTCGTTGCCTCGAGGGCGGCACGCCGGTACCGGTGT
CGGCGGCCTCCGTGGTGGCAGGGACGATGGTCAAGGGTCCCCGGGCGGGG
GGGGCTCGAGAGGGCGGCTCAATGAGGCAGACGCCGATCTGTCTGACATC
AAGGCCACCATGAGGAGGATCGACGGTACGCACGCTTGCGTTGAACTGGG
GTTGCGAGGGACGGAGTTTTTTTTTCCTCCTGAGATTTGAGATTGAGGTT
TGAGATTTAGAACTTGTACCTGGCCTGTGTGCTCTGTTGGGCTCCCTCTC
GTGTGAGTGTTGGCTGATTCGGGTGGCGGTGTGCAGCAGGGCTTGGTACC
TTGGCCGTCGGGCTACGCGCCCGTGCCCAGACCATGATGCGCGTAGATAT
ATAGCGTCACCGGTATTTCAAGGGTGACTTGAATGGCTTTTTTTTTTTAT
CGTGCGTTTTTTTGGCAGAGGCAGCTCTTTCTAAAAGTCTAAAAGGGGAC
GTATTACACATGTTGCTTCACCTAGGTACCATATTACTTTGTTTTAGTAC
TCCTCTCGATGTTCCCCCAACGCCAACTACCGCTAGATTTGGAGCGGGAT
TACGCGCGAGAAAAGCATCCCGCGACTCTCCCACCTGTGTCAGTATGTGT
GTAGGGCGACAAATCGAAGTGGCGGGCTACTTGTTTTGTCAACACGGGTG
CAAGGATATCGAAGACGTTCACCCTCCCCGCCTGCGCACACCCGTTGATT
CACCATCGGCAGGTGCAAGAGCCGCTGGATACACCACCATAAACTCCTTC
GGGCTGGGCTCCCCCTCCACGGCTTCTGCCGGCCCTACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1446:335..1173-

>mRNA_L-elsbetiae_contig1446.3285.1 ID=mRNA_L-elsbetiae_contig1446.3285.1|Name=mRNA_L-elsbetiae_contig1446.3285.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig1446:335..1173- (Laminarionema elsbetiae ELsaHSoW15)
AGGGCATGGTCTTCGTCGTTGCCTCGAGGGCGGCACGCCGGTACCGGTGT
CGGCGGCCTCCGTGGTGGCAGGGACGATGGTCAAGGGTCCCCGGGCGGGG
GGGGCTCGAGAGGGCGGCTCAATGAGGCAGACGCCGATCTGTCTGACATC
AAGGCCACCATGAGGAGGATCGACGAGGGCATGGTCTTCGTCGTTGCCTC
GAGGGCGGCACGCCGGTACCGGTGTCGGCGGCCTCCGTGGTGGCAGGGAC
GATGGTCAAGGGTCCCCGGGCGGGGGGGGCTCGAGAGGGCGGCTCAATGA
GGCAGACGCCGATCTGTCTGACATCAAGGCCACCATGAGGAGGATCGACG
GTGCAAGAGCCGCTGGATACACCACCATAAACTCCTTCGGGCTGGGCTCC
CCCTCCACGGCTTCTGCCGGCCCTACTGTGCAAGAGCCGCTGGATACACC
ACCATAAACTCCTTCGGGCTGGGCTCCCCCTCCACGGCTTCTGCCGGCCC
TACT
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