mRNA_L-elsbetiae_contig14425.3269.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig14425.3269.1
Unique Name	mRNA_L-elsbetiae_contig14425.3269.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

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BLAST of mRNA_L-elsbetiae_contig14425.3269.1 vs. uniprot
Match: D7FMQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMQ8_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.020e-16
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 1

Query:    1 EIVVGNWRDDKFLEGRLFDTVLMDYLVGAIDGFAPYYQ 114
            EIVVGNWRD+KFLEGR+FDTVL DYLVGAIDGFAPYYQ
Sbjct:  131 EIVVGNWRDEKFLEGRVFDTVLADYLVGAIDGFAPYYQ 168

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BLAST of mRNA_L-elsbetiae_contig14425.3269.1 vs. uniprot
Match: A0A835Z2H5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2H5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.950e-12
Identity = 25/37 (67.57%), Postives = 33/37 (89.19%), Query Frame = 1

Query:    4 IVVGNWRDDKFLEGRLFDTVLMDYLVGAIDGFAPYYQ 114
            I+VGNW+D+ F EG ++DT+L DYL+GAIDGF+PYYQ
Sbjct:   78 IIVGNWQDESFQEGEIYDTILADYLIGAIDGFSPYYQ 114

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BLAST of mRNA_L-elsbetiae_contig14425.3269.1 vs. uniprot
Match: K0TPA5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPA5_THAOC)

HSP 1 Score: 67.8 bits (164), Expect = 3.360e-12
Identity = 27/38 (71.05%), Postives = 34/38 (89.47%), Query Frame = 1

Query:    1 EIVVGNWRDDKFLEGRLFDTVLMDYLVGAIDGFAPYYQ 114
            EI+VGNW+D  FLEGR +DT+L DYL+GA+DGFAPY+Q
Sbjct:  362 EILVGNWQDPGFLEGRKYDTILADYLLGAVDGFAPYFQ 399

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BLAST of mRNA_L-elsbetiae_contig14425.3269.1 vs. uniprot
Match: K0TM91_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TM91_THAOC)

HSP 1 Score: 64.7 bits (156), Expect = 3.490e-11
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 1

Query:    1 EIVVGNWRDDKFLEGRLFDTVLMDYLVGAIDGFAPYYQ 114
            E+++GNW D+  LEG+ +DT+L DYLVGAIDGF+PY+Q
Sbjct:  174 EVIIGNWVDEDLLEGKKYDTILADYLVGAIDGFSPYFQ 211

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BLAST of mRNA_L-elsbetiae_contig14425.3269.1 vs. uniprot
Match: UPI001E3B186E (class I SAM-dependent methyltransferase n=1 Tax=Aliidiomarina indica TaxID=2749147 RepID=UPI001E3B186E)

HSP 1 Score: 63.5 bits (153), Expect = 4.190e-11
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1

Query:    4 IVVGNWRDDKFLEGRLFDTVLMDYLVGAIDGFAPYYQ 114
            IVVGNW D K L G  FDTVL+DY +GAIDGFAPY+Q
Sbjct:   39 IVVGNWVDPKLLAGETFDTVLVDYFIGAIDGFAPYWQ 75

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BLAST of mRNA_L-elsbetiae_contig14425.3269.1 vs. uniprot
Match: A0A432W6Z8_9GAMM (Uncharacterized protein n=1 Tax=Aliidiomarina minuta TaxID=880057 RepID=A0A432W6Z8_9GAMM)

HSP 1 Score: 63.9 bits (154), Expect = 4.380e-11
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1

Query:    4 IVVGNWRDDKFLEGRLFDTVLMDYLVGAIDGFAPYYQ 114
            I+VGNW DDK L G  FDT+L+DY +GA+DGFAPY+Q
Sbjct:   73 ILVGNWIDDKLLRGEQFDTLLLDYFIGAVDGFAPYWQ 109

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BLAST of mRNA_L-elsbetiae_contig14425.3269.1 vs. uniprot
Match: UPI001C63BE92 (hypothetical protein n=1 Tax=Asticcacaulis tiandongensis TaxID=2565365 RepID=UPI001C63BE92)

HSP 1 Score: 63.9 bits (154), Expect = 4.380e-11
Identity = 25/37 (67.57%), Postives = 32/37 (86.49%), Query Frame = 1

Query:    4 IVVGNWRDDKFLEGRLFDTVLMDYLVGAIDGFAPYYQ 114
            ++VGNW+DD  L G +FDTV+ DYLVGAI+GFAPY+Q
Sbjct:   73 LMVGNWQDDTLLSGEVFDTVIADYLVGAIEGFAPYFQ 109

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BLAST of mRNA_L-elsbetiae_contig14425.3269.1 vs. uniprot
Match: A0A552X4P7_9GAMM (Class I SAM-dependent methyltransferase n=1 Tax=Aliidiomarina halalkaliphila TaxID=2593535 RepID=A0A552X4P7_9GAMM)

HSP 1 Score: 63.5 bits (153), Expect = 5.930e-11
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1

Query:    4 IVVGNWRDDKFLEGRLFDTVLMDYLVGAIDGFAPYYQ 114
            IVVGNW D K L G  FDTVL+DY +GAIDGFAPY+Q
Sbjct:   72 IVVGNWIDPKMLAGETFDTVLVDYFIGAIDGFAPYWQ 108

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BLAST of mRNA_L-elsbetiae_contig14425.3269.1 vs. uniprot
Match: A0A516WEL6_9BURK (Class I SAM-dependent methyltransferase n=3 Tax=Alcaligenaceae TaxID=506 RepID=A0A516WEL6_9BURK)

HSP 1 Score: 63.5 bits (153), Expect = 6.250e-11
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1

Query:    4 IVVGNWRDDKFLEGRLFDTVLMDYLVGAIDGFAPYYQ 114
            IV GNW D + LEG  +DTVL DYLVGAIDGFAPY+Q
Sbjct:   73 IVTGNWMDKRLLEGERYDTVLADYLVGAIDGFAPYWQ 109

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BLAST of mRNA_L-elsbetiae_contig14425.3269.1 vs. uniprot
Match: F5Z200_MYCSD (Uncharacterized protein n=3 Tax=Mycobacteriaceae TaxID=1762 RepID=F5Z200_MYCSD)

HSP 1 Score: 62.4 bits (150), Expect = 9.090e-11
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1

Query:    4 IVVGNWRDDKFLEGRLFDTVLMDYLVGAIDGFAPYYQ 114
            +++GNW DD  L G  FDTVL+DYLVGAI+GFAPY+Q
Sbjct:   18 LMLGNWMDDNLLAGETFDTVLVDYLVGAIEGFAPYWQ 54

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig14425.3269.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig14425.3269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FMQ8_ECTSI	1.020e-16	92.11	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835Z2H5_9STRA	2.950e-12	67.57	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
K0TPA5_THAOC	3.360e-12	71.05	Uncharacterized protein n=1 Tax=Thalassiosira ocea...	[more]
K0TM91_THAOC	3.490e-11	63.16	Uncharacterized protein n=1 Tax=Thalassiosira ocea...	[more]
UPI001E3B186E	4.190e-11	72.97	class I SAM-dependent methyltransferase n=1 Tax=Al...	[more]
A0A432W6Z8_9GAMM	4.380e-11	67.57	Uncharacterized protein n=1 Tax=Aliidiomarina minu...	[more]
UPI001C63BE92	4.380e-11	67.57	hypothetical protein n=1 Tax=Asticcacaulis tiandon...	[more]
A0A552X4P7_9GAMM	5.930e-11	72.97	Class I SAM-dependent methyltransferase n=1 Tax=Al...	[more]
A0A516WEL6_9BURK	6.250e-11	72.97	Class I SAM-dependent methyltransferase n=3 Tax=Al...	[more]
F5Z200_MYCSD	9.090e-11	67.57	Uncharacterized protein n=3 Tax=Mycobacteriaceae T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig14425	contig	L-elsbetiae_contig14425:3972..4085 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	80.5
Seed ortholog evalue	1.9e-13
Seed eggNOG ortholog	2880.D7FMQ8
Hectar predicted targeting category	no signal peptide or anchor
EggNOG OGs	28I17@1,2RZZT@2759
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Ec32 ortholog description	S-adenosyl-L-methionine-dependent methyltransferase
Ec32 ortholog	Ec-23_001240.1
Exons	1
Model size	114
Cds size	114
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815578.1570196-CDS-L-elsbetiae_contig14425:3971..4085	1622815578.1570196-CDS-L-elsbetiae_contig14425:3971..4085	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig14425 3972..4085 -
1691682970.4115758-CDS-L-elsbetiae_contig14425:3971..4085	1691682970.4115758-CDS-L-elsbetiae_contig14425:3971..4085	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig14425 3972..4085 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig14425.3269.1	prot_L-elsbetiae_contig14425.3269.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig14425 3972..4085 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig14425:3972..4085-
coding sequence from alignment at L-elsbetiae_contig14425:3972..4085-

protein sequence of mRNA_L-elsbetiae_contig14425.3269.1

>prot_L-elsbetiae_contig14425.3269.1 ID=prot_L-elsbetiae_contig14425.3269.1|Name=mRNA_L-elsbetiae_contig14425.3269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=38bp
EIVVGNWRDDKFLEGRLFDTVLMDYLVGAIDGFAPYYQ

mRNA from alignment at L-elsbetiae_contig14425:3972..4085-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig14425.3269.1 ID=mRNA_L-elsbetiae_contig14425.3269.1|Name=mRNA_L-elsbetiae_contig14425.3269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=114bp|location=Sequence derived from alignment at L-elsbetiae_contig14425:3972..4085- (Laminarionema elsbetiae ELsaHSoW15)
GAGATCGTCGTGGGCAACTGGAGGGATGACAAGTTCTTGGAAGGCCGACT
TTTCGACACCGTGCTCATGGATTATCTCGTCGGGGCCATCGACGGCTTCG
CCCCCTACTACCAG

Coding sequence (CDS) from alignment at L-elsbetiae_contig14425:3972..4085-

>mRNA_L-elsbetiae_contig14425.3269.1 ID=mRNA_L-elsbetiae_contig14425.3269.1|Name=mRNA_L-elsbetiae_contig14425.3269.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=228bp|location=Sequence derived from alignment at L-elsbetiae_contig14425:3972..4085- (Laminarionema elsbetiae ELsaHSoW15)
GAGATCGTCGTGGGCAACTGGAGGGATGACAAGTTCTTGGAAGGCCGACT
TTTCGACACCGTGCTCATGGATTATCTCGTCGGGGCCATCGACGGCTTCG
CCCCCTACTACCAGGAGATCGTCGTGGGCAACTGGAGGGATGACAAGTTC
TTGGAAGGCCGACTTTTCGACACCGTGCTCATGGATTATCTCGTCGGGGC
CATCGACGGCTTCGCCCCCTACTACCAG