mRNA_L-elsbetiae_contig14400.3252.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14400.3252.1
Unique NamemRNA_L-elsbetiae_contig14400.3252.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14400.3252.1 vs. uniprot
Match: A0A6H5JL55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 1.030e-60
Identity = 105/122 (86.07%), Postives = 111/122 (90.98%), Query Frame = 1 
Query:    1 TQTVEKNLSPEWDETFEFAVKDFTRLLEVRVFDADVVVDESMGAFTIRLEDFLHKRRVTRWYRLLDEDELYDEEDPLGEIELSVQWLHDPRAKDIATRKLSLIEIVQRTLGFVDYSSDTNED 366
            T TVEKNL+PEWDE FEFAVKDFTR LEV V DADVVVDE+MGAF I+LED LHKRRVTRWYRLL EDELYDEE+PLGEIELSVQW HDPRAKDIATRKLSL+EIVQRTLGF D+SSDT ED
Sbjct:  260 TTTVEKNLAPEWDEVFEFAVKDFTRRLEVEVLDADVVVDEAMGAFVIKLEDLLHKRRVTRWYRLLGEDELYDEENPLGEIELSVQWFHDPRAKDIATRKLSLLEIVQRTLGFHDHSSDTAED 381
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BLAST of mRNA_L-elsbetiae_contig14400.3252.1 vs. uniprot
Match: D8LF91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF91_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 7.470e-17
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 TQTVEKNLSPEWDETFEFAVKDFTRLLEVRVFDADVVVDESMGAFTIRLEDFLHKRRVT 177
            T TVEKNL+PEWDE F+FAVKDFT  LEV V DA VVV ++MGAF I+LE+ LHKRR++
Sbjct:  253 TTTVEKNLAPEWDEVFQFAVKDFTPKLEVEVLDAHVVVQQAMGAFVIKLEELLHKRRMS 311
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BLAST of mRNA_L-elsbetiae_contig14400.3252.1 vs. uniprot
Match: G1TVK3_RABIT (Extended synaptotagmin 3 n=2 Tax=Oryctolagus cuniculus TaxID=9986 RepID=G1TVK3_RABIT)

HSP 1 Score: 53.5 bits (127), Expect = 2.310e-5
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:    1 TQTVEKNLSPEWDETFEFAVKDFT-RLLEVRVFDADVVVDESMGAFTIRLEDFLHKRRVTRWYRLLDEDELYDEEDPLGEIELSVQWL 261
            ++TV +NLSP W+E FEF V +   + LEV ++D D   D+ +G+  I LED +  R V  W+ L D           G++ L ++WL
Sbjct:  342 SRTVYRNLSPTWNEVFEFMVYEVPGQDLEVDLYDEDPDRDDFLGSLQICLEDVMTNRVVDEWFVLNDTTS--------GQLHLRLEWL 421
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BLAST of mRNA_L-elsbetiae_contig14400.3252.1 vs. uniprot
Match: UPI001FAEEE8A (extended synaptotagmin-3 n=1 Tax=Hippoglossus stenolepis TaxID=195615 RepID=UPI001FAEEE8A)

HSP 1 Score: 52.0 bits (123), Expect = 7.610e-5
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:    1 TQTVEKNLSPEWDETFEFAVKDFT-RLLEVRVFDADVVVDESMGAFTIRLEDFLHKRRVTRWYRLLDEDELYDEEDPLGEIELSVQWL 261
            ++T+++NLSP W+E FEF V +   + LE+ VFD D   D+ +G + +       ++ + +W+ L        E    GE+ L +QWL
Sbjct:  360 SKTIKENLSPTWNEVFEFVVHEAPGQELELEVFDEDTDKDDRLGGYNLDFGQVKKEKEMDQWFPL--------EGVQNGEVHLKLQWL 439
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BLAST of mRNA_L-elsbetiae_contig14400.3252.1 vs. uniprot
Match: UPI00148C8697 (extended synaptotagmin-3 isoform X1 n=1 Tax=Hippoglossus hippoglossus TaxID=8267 RepID=UPI00148C8697)

HSP 1 Score: 52.0 bits (123), Expect = 7.850e-5
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 1 
Query:    1 TQTVEKNLSPEWDETFEFAVKDFT-RLLEVRVFDADVVVDESMGAFTIRLEDFLHKRRVTRWYRLLDEDELYDEEDPLGEIELSVQWL 261
            ++T+++NLSP W+E FEF V +   + LE+ VFD D   D+ +G + +       ++ + +W+ L        E    GE+ L +QWL
Sbjct:  346 SKTIKENLSPTWNEVFEFVVHEAPGQELELEVFDEDTDKDDRLGGYNLDFGQVKKEKEMDQWFPL--------EGVQNGEVHLKLQWL 425
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BLAST of mRNA_L-elsbetiae_contig14400.3252.1 vs. uniprot
Match: A0A7S0V639_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V639_9CRYP)

HSP 1 Score: 51.6 bits (122), Expect = 9.240e-5
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:    1 TQTVEKNLSPEWDETFEFAVKDFTRLLEVRVFDADVVVDE-SMGAFTIRLEDFLH--KRRVTRWYRLLDEDELYDEEDPLGEIEL 246
            +QTVEKNL+P+W+E     V++  + LE+ VFD DV  D+ SMG  T+ L D +    + VT   +  DE    + E+ LGE+ +
Sbjct:  292 SQTVEKNLNPQWNEEMVLKVRNRMQRLEIEVFDMDVADDDDSMGKATVSLVDLVEGKPKAVTAKLKAFDEGG-NETEEGLGEVSM 375
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14400.3252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JL55_9PHAE1.030e-6086.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF91_ECTSI7.470e-1769.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
G1TVK3_RABIT2.310e-536.36Extended synaptotagmin 3 n=2 Tax=Oryctolagus cunic... [more]
UPI001FAEEE8A7.610e-531.82extended synaptotagmin-3 n=1 Tax=Hippoglossus sten... [more]
UPI00148C86977.850e-531.82extended synaptotagmin-3 isoform X1 n=1 Tax=Hippog... [more]
A0A7S0V639_9CRYP9.240e-538.82Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14400contigL-elsbetiae_contig14400:294..3058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue3.6e-15
Seed eggNOG ortholog2880.D8LF91
KEGG koko:K19949,ko:K22125,ko:K22127
Hectar predicted targeting categoryother localisation
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1326@1,KOG1326@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons3
Model size462
Cds size459
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14400.3252.1prot_L-elsbetiae_contig14400.3252.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14400 294..3057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.7275655-CDS-L-elsbetiae_contig14400:293..4641622815576.7275655-CDS-L-elsbetiae_contig14400:293..464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14400 294..464 +
1691682969.5554838-CDS-L-elsbetiae_contig14400:293..4641691682969.5554838-CDS-L-elsbetiae_contig14400:293..464Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14400 294..464 +
1622815576.7381687-CDS-L-elsbetiae_contig14400:2064..22241622815576.7381687-CDS-L-elsbetiae_contig14400:2064..2224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14400 2065..2224 +
1691682969.5686402-CDS-L-elsbetiae_contig14400:2064..22241691682969.5686402-CDS-L-elsbetiae_contig14400:2064..2224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14400 2065..2224 +
1622815576.7483168-CDS-L-elsbetiae_contig14400:2929..30571622815576.7483168-CDS-L-elsbetiae_contig14400:2929..3057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14400 2930..3057 +
1691682969.5787659-CDS-L-elsbetiae_contig14400:2929..30571691682969.5787659-CDS-L-elsbetiae_contig14400:2929..3057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14400 2930..3057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14400.3252.1

>prot_L-elsbetiae_contig14400.3252.1 ID=prot_L-elsbetiae_contig14400.3252.1|Name=mRNA_L-elsbetiae_contig14400.3252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
TQTVEKNLSPEWDETFEFAVKDFTRLLEVRVFDADVVVDESMGAFTIRLE
DFLHKRRVTRWYRLLDEDELYDEEDPLGEIELSVQWLHDPRAKDIATRKL
SLIEIVQRTLGFVDYSSDTNEDEDDEVDDKKSSGGGSKKKAKKKRLPKSL
KDK
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mRNA from alignment at L-elsbetiae_contig14400:294..3058+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14400.3252.1 ID=mRNA_L-elsbetiae_contig14400.3252.1|Name=mRNA_L-elsbetiae_contig14400.3252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2765bp|location=Sequence derived from alignment at L-elsbetiae_contig14400:294..3058+ (Laminarionema elsbetiae ELsaHSoW15)
ACCCAGACGGTGGAGAAAAATCTGTCGCCGGAGTGGGACGAGACGTTCGA
GTTCGCGGTGAAGGACTTCACGCGGCTGCTGGAAGTTCGAGTGTTTGATG
CCGACGTCGTTGTCGACGAATCGATGGGCGCGTTCACGATAAGGCTCGAG
GACTTTCTGCACAAGCGGAGGGTGAGTTTGTTTTTGTCGTTCCTTGTTGT
GTTTGCTGTTGGCGCTTCTGACGACGCCAACAACCCGCCGATATGCTGTG
CATAGAACAGCACTACTATGATTTATTTGCACATGCACGCACGCAGGCAA
GCAGGCAGGCAGGCACTTTGTTTGCTTGGGGGGGGGGAAGATTCGTGTTT
CTGTTTACTCTGCCTTTTCCGTTGATTCCGCCTTTTCTTTACTCTTCTTT
TTTTTCTTCTCGGGGCCTTTTCTGTTCCGTCAGAGAGGCAACGTGTACAA
TAACAAGGTTCACATGTTGTGGGCGTGTGTAGAAAGATAGATGTCTGTTT
TGCCGGAGATACCGGAGATGCATGCGTATTACTCACACAGGAGTAAATAC
TCGGCTGAGTAGAGTATTGAGGGTGGTAATAAACCCTACTCGAGCCTCGA
GTAGAGGATCGACAGCTTTACTAAACCACGAGTGTAGGTAGAGTTTTTTA
CCGAGTACTACTGCTGTTGTACTCGGCATAGTTTGTAGAGTACCGGCCAA
AAATCCCGATACTCTACTCGGCCGAGTACAGTATGGAGAGCCTTACTAAA
CCTGCTCGAGAGTAAAATACACGCGAGTACCGAGTAATACTCGCGAGTAC
GTTTAGTACATGCCCTACTAAACACAACCTTGAAAGGAGTAGGTTTTTAC
TCCGGTCAAGAAGGAAAAATGCTGCGCTTTTTTGCTCGAAAATGGCCAGG
GAATACCATTCCCCGGCGGTTGTTTTGCACTCAGCGATCGGTCAGACAGA
CCTGTAAAATAACCGTAATCCCCTCTGAGTAGTCCATCCACCACCCACTG
CCCAACCCCCGTCCGAATCTCCCCACNNNNNNNNNNTTTTGTCTCTTCTT
TTAACTTTTGCACCCGTTGCACCACCCCAGCAAAAATCAAATTTAACCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCGGGACAAACTTTCTTG
CCGATTTTCTCCACAACCGAGATAGGACGACCAGCAGAAGCATTAGATTT
ATTTGGAAAGGTCTCGGCGAGATCTTTGCGATGGCGCATCTCTCGGGCAC
TACATAGAAACTCCTCTCCAATGCAGAGAAATTTTACGCCCTGACTTGAT
ATGCACGTTCAGGCCCTGGTTTAATGCAATTTGGCCTTGTTTATGCCAAT
TTTCCAGAAACCGGTATCTTGCGCACGTTGTGTTACTATGCTCAGAAAAG
GGATTAATGCTCAAAATATGCCCATTTTCCGTGCATACATAAACGCATCA
TTCGGCCTCATTTTCTCTTCTATCTGTGCTCAAAAAGCCCATTTTGCACT
AAACGATACTGTGCATATGTATCAAGAGCCCCCGGAGATGACGATGGGTC
ACCTTCGTCCCCTCGCGGAGCCCCCGTGGATGGGGCACTTTTATCCCCTC
GCGGTAGCCGTAATTACGCGTACGTACATAACACCAAAACTTGATTTGCC
GCAATTACGTGTACGTAACGTGGAACATCCTGCTAAATAGTAATATACTG
TTGTGCTTATGTATCAAGTCGAGGCATACATAAGAAAATCGTGCTGTCTT
GGTGCTGGTACATACGTACAGGTGACGCGTTGGTACCGCCTGCTGGATGA
GGACGAGCTCTATGACGAGGAGGACCCCCTGGGGGAGATAGAGCTGTCGG
TGCAGTGGCTGCACGATCCTCGGGCCAAGGACATCGCCACCAGGAAGCTT
TCGCTGATTGAGATCGTGCAGAGGACCCTCGGCAAGTGCATATACCTAGG
ACATGCATGTCGTGGCGTCATAGCACGGCAGTATGTATGTGATGTGGCAC
ATAGTCTACGCACGTACTTCTTTTCGAAAAGTATTTTTGTGTAGCCTCTT
GCCCTCTTTTTTTTTTTTTTCAAGGCGTGGTTGCCGCCGCAAGATACGGC
AAGACAAGATACCCCGCAAAATACGACAAGACAAAACACCCCGCAGGATA
CGGCAAGAAGGATACGACAAGACAAGACGCCCCGCAAGATACATTAAGAC
AAGACACCCCGTTCGCTTTTTTTTTTTTTTTTTTGACACGTAAATATCTT
GGCTTCGTTTCTATCGTAGAGTTTCCGCGGAGCTCTTTGCCTTTCGTTTT
GGGTAAAAGCTTGTTTTGCCTCTATTTAGATACGTACGCAAGTGCTCTCA
AACATTGTCACCGCCAGCTGTACTTTTTCTCCAAAGTTTCCAAGTCGCCC
TTATATTATTTCCGAACAGAGGGAGTATATGCCATGCGGTGGAATGAATG
CACTGGGATGCGACGGAGTGCAGCCCAATTCCACGTTACACAGTAGTGAT
ATGATGTGATGTGACGTGGCGTGATTTGATGTGACATGACGTGATGTGAC
GTGATGTGACATGATGTGATGTGACGTGACGTAATGTAATATGATGCGAC
GTTACGTGATGTGACGTGACGCGGTGTGTGATGCAGGCTTCGTGGACTAC
AGCAGCGACACGAACGAAGACGAGGACGACGAAGTGGACGACAAGAAGAG
CAGCGGCGGCGGCAGCAAGAAGAAGGCGAAGAAGAAACGCCTCCCCAAGT
CCCTCAAGGACAAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14400:294..3058+

>mRNA_L-elsbetiae_contig14400.3252.1 ID=mRNA_L-elsbetiae_contig14400.3252.1|Name=mRNA_L-elsbetiae_contig14400.3252.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig14400:294..3058+ (Laminarionema elsbetiae ELsaHSoW15)
ACCCAGACGGTGGAGAAAAATCTGTCGCCGGAGTGGGACGAGACGTTCGA
GTTCGCGGTGAAGGACTTCACGCGGCTGCTGGAAGTTCGAGTGTTTGATG
CCGACGTCGTTGTCGACGAATCGATGGGCGCGTTCACGATAAGGCTCGAG
GACTTTCTGCACAAGCGGAGGACCCAGACGGTGGAGAAAAATCTGTCGCC
GGAGTGGGACGAGACGTTCGAGTTCGCGGTGAAGGACTTCACGCGGCTGC
TGGAAGTTCGAGTGTTTGATGCCGACGTCGTTGTCGACGAATCGATGGGC
GCGTTCACGATAAGGCTCGAGGACTTTCTGCACAAGCGGAGGGTGACGCG
TTGGTACCGCCTGCTGGATGAGGACGAGCTCTATGACGAGGAGGACCCCC
TGGGGGAGATAGAGCTGTCGGTGCAGTGGCTGCACGATCCTCGGGCCAAG
GACATCGCCACCAGGAAGCTTTCGCTGATTGAGATCGTGCAGAGGACCCT
CGGTGACGCGTTGGTACCGCCTGCTGGATGAGGACGAGCTCTATGACGAG
GAGGACCCCCTGGGGGAGATAGAGCTGTCGGTGCAGTGGCTGCACGATCC
TCGGGCCAAGGACATCGCCACCAGGAAGCTTTCGCTGATTGAGATCGTGC
AGAGGACCCTCGGCTTCGTGGACTACAGCAGCGACACGAACGAAGACGAG
GACGACGAAGTGGACGACAAGAAGAGCAGCGGCGGCGGCAGCAAGAAGAA
GGCGAAGAAGAAACGCCTCCCCAAGTCCCTCAAGGACAAGGCTTCGTGGA
CTACAGCAGCGACACGAACGAAGACGAGGACGACGAAGTGGACGACAAGA
AGAGCAGCGGCGGCGGCAGCAAGAAGAAGGCGAAGAAGAAACGCCTCCCC
AAGTCCCTCAAGGACAAG
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