mRNA_L-elsbetiae_contig1440.3250.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1440.3250.1
Unique NamemRNA_L-elsbetiae_contig1440.3250.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1440.3250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1440contigL-elsbetiae_contig1440:11147..11680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size534
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1440.3250.1prot_L-elsbetiae_contig1440.3250.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1440 11149..11475 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.5526824-UTR-L-elsbetiae_contig1440:11146..111481622815576.5526824-UTR-L-elsbetiae_contig1440:11146..11148Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1440 11147..11148 +
1691682969.4377048-UTR-L-elsbetiae_contig1440:11146..111481691682969.4377048-UTR-L-elsbetiae_contig1440:11146..11148Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1440 11147..11148 +
1622815576.5766025-UTR-L-elsbetiae_contig1440:11475..116801622815576.5766025-UTR-L-elsbetiae_contig1440:11475..11680Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1440 11476..11680 +
1691682969.4588947-UTR-L-elsbetiae_contig1440:11475..116801691682969.4588947-UTR-L-elsbetiae_contig1440:11475..11680Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1440 11476..11680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.566688-CDS-L-elsbetiae_contig1440:11148..114751622815576.566688-CDS-L-elsbetiae_contig1440:11148..11475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1440 11149..11475 +
1691682969.449717-CDS-L-elsbetiae_contig1440:11148..114751691682969.449717-CDS-L-elsbetiae_contig1440:11148..11475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1440 11149..11475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1440.3250.1

>prot_L-elsbetiae_contig1440.3250.1 ID=prot_L-elsbetiae_contig1440.3250.1|Name=mRNA_L-elsbetiae_contig1440.3250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MSWTTWSRGSVPLLLLLLLSPLGAMVTVRMVLALLVTKLGTLLPPAASSV
AGESTGRGALNTAPRWSGEGFEKPTLQPKPRVDSSDSAPSAASIASGACG
WLCWYCCC*
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mRNA from alignment at L-elsbetiae_contig1440:11147..11680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1440.3250.1 ID=mRNA_L-elsbetiae_contig1440.3250.1|Name=mRNA_L-elsbetiae_contig1440.3250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig1440:11147..11680+ (Laminarionema elsbetiae ELsaHSoW15)
GGATGTCGTGGACGACGTGGTCTCGCGGTTCGGTCCCGCTGCTGCTGCTG
CTGCTGCTCTCGCCACTGGGAGCGATGGTCACGGTTCGGATGGTGTTGGC
GTTGCTGGTGACGAAGCTAGGAACGCTACTCCCACCGGCCGCATCGTCCG
TCGCCGGTGAAAGCACTGGTAGAGGAGCCCTGAACACGGCGCCTAGATGG
TCGGGTGAGGGCTTCGAGAAGCCAACCCTGCAGCCGAAGCCGAGGGTGGA
CAGTAGTGACTCTGCACCTTCGGCCGCTTCCATCGCCTCTGGTGCTTGCG
GGTGGTTGTGCTGGTACTGCTGTTGTTGATGCAGCGGTGATGATGCTGTG
GTGGAGAATAAGGCGAGGCATCCCGAAACGACGGCGTGGCCCCTTACGAC
TCTTTTTACGACAGGGTTTTGTTTTGAGACGAATTGCAATTTCTTGAGCG
AGGCATTCATCGGATTGGGATTTCAACGCCAAACTGCGTGACGTACACAT
GATCTGTTCCATTCGTCTGCGGTGGTTATGTTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1440:11147..11680+

>mRNA_L-elsbetiae_contig1440.3250.1 ID=mRNA_L-elsbetiae_contig1440.3250.1|Name=mRNA_L-elsbetiae_contig1440.3250.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig1440:11147..11680+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTGGACGACGTGGTCTCGCGGTTCGGTCCCGCTGCTGCTGCTGCT
GCTGCTCTCGCCACTGGGAGCGATGGTCACGGTTCGGATGGTGTTGGCGT
TGCTGGTGACGAAGCTAGGAACGCTACTCCCACCGGCCGCATCGTCCGTC
GCCGGTGAAAGCACTGGTAGAGGAGCCCTGAACACGGCGCCTAGATGGTC
GGGTGAGGGCTTCGAGAAGCCAACCCTGCAGCCGAAGCCGAGGGTGGACA
GTAGTGACTCTGCACCTTCGGCCGCTTCCATCGCCTCTGGTGCTTGCGGG
TGGTTGTGCTGGTACTGCTGTTGTTGAATGTCGTGGACGACGTGGTCTCG
CGGTTCGGTCCCGCTGCTGCTGCTGCTGCTGCTCTCGCCACTGGGAGCGA
TGGTCACGGTTCGGATGGTGTTGGCGTTGCTGGTGACGAAGCTAGGAACG
CTACTCCCACCGGCCGCATCGTCCGTCGCCGGTGAAAGCACTGGTAGAGG
AGCCCTGAACACGGCGCCTAGATGGTCGGGTGAGGGCTTCGAGAAGCCAA
CCCTGCAGCCGAAGCCGAGGGTGGACAGTAGTGACTCTGCACCTTCGGCC
GCTTCCATCGCCTCTGGTGCTTGCGGGTGGTTGTGCTGGTACTGCTGTTG
TTGA
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