|
Homology
BLAST of mRNA_L-elsbetiae_contig144.3243.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE) HSP 1 Score: 305 bits (782), Expect = 8.530e-87 Identity = 157/193 (81.35%), Postives = 168/193 (87.05%), Query Frame = 2
Query: 839 RGKVYELPLRAGDESTTVAVRAGNAGVYVVTCVNRQRKTSSCSRTDCQGFRAGFVSQQQTVESHGGVSSAVGSLCAHAKLALEHMTANTMKKATSVRSGGIARRDYDAAKELVKAAKSSSHLTTEEYNDVMSIVEGAERSGVWPVVDTERHQYMVLDMRSRTTELDWGSVKLDQVAGGGASRRLTSSRNFMCK 1417
RGKVY+LP R GDESTTVAVRAGNAGVYV TCVNRQRKTSSCSRT+CQG AGFVSQQ+TV SHGGV+SAVG LC HA LALEHM A TMK+ATSV GG+A DY AAKELV AAK SHLT EE NDVMSIVEGAERSGVWPVV+ ERHQYMVLDMRSRTTELDWGSVK DQV+ G ASRR++SSR+FMCK
Sbjct: 45 RGKVYQLPWRTGDESTTVAVRAGNAGVYVATCVNRQRKTSSCSRTECQGATAGFVSQQRTVGSHGGVASAVGGLCQHAALALEHMAAKTMKRATSV-LGGVASTDYAAAKELVTAAKLGSHLTAEECNDVMSIVEGAERSGVWPVVEVERHQYMVLDMRSRTTELDWGSVKFDQVSEGEASRRMSSSRHFMCK 236
BLAST of mRNA_L-elsbetiae_contig144.3243.1 vs. uniprot
Match: D8LSV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV9_ECTSI) HSP 1 Score: 209 bits (531), Expect = 1.600e-58 Identity = 109/193 (56.48%), Postives = 138/193 (71.50%), Query Frame = 2
Query: 839 RGKVYELPLRAGDESTTVAVRAGNAGVYVVTCVNRQRKTSSCSRTDCQGFRAGFVSQQQTVESHGGVSSAVGSLCAHAKLALEHMTANTMKKATSVRSGGIARRDYDAAKELVKAAKSSSHLTTEEYNDVMSIVEGAERSGVWPVVDTERHQYMVLDMRSRTTELDWGSVKLDQVAGGGASRRLTSSRNFMCK 1417
R +V++LP GD+STTVAVR GNA +V+T VN +R+TSSCSRT CQG RAG V+QQQT SHGGV+SA+G LC HAK ALEHM T+K A V+ G D+DAAKE V AKS HL+ E+ +M++VE AE SGVWPV +TE + ++V D R+RT+E D+ VK D V G +SRRLT +NFMC+
Sbjct: 96 RQRVFKLPRGNGDQSTTVAVRLGNADNWVITSVNPERQTSSCSRTQCQGLRAGLVAQQQTAGSHGGVASAIGGLCKHAKAALEHMRKKTVKDAREVKGDGW---DWDAAKEHVATAKSDGHLSVVEHTAIMTMVERAEGSGVWPVYETEPNHFVVRDDRTRTSEHDYACVKYDTVEPGKSSRRLTPPKNFMCR 285
BLAST of mRNA_L-elsbetiae_contig144.3243.1 vs. uniprot
Match: D7FR12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR12_ECTSI) HSP 1 Score: 206 bits (525), Expect = 9.150e-58 Identity = 108/190 (56.84%), Postives = 136/190 (71.58%), Query Frame = 2
Query: 848 VYELPLRAGDESTTVAVRAGNAGVYVVTCVNRQRKTSSCSRTDCQGFRAGFVSQQQTVESHGGVSSAVGSLCAHAKLALEHMTANTMKKATSVRSGGIARRDYDAAKELVKAAKSSSHLTTEEYNDVMSIVEGAERSGVWPVVDTERHQYMVLDMRSRTTELDWGSVKLDQVAGGGASRRLTSSRNFMCK 1417
V++LP GD+STTVAVR GNA +V+T VN +R+TSSCSRT CQG RAG V+QQQT SHGGV+SA+G LC HAK ALEHM T+K A V+ G D+DAAKE V AKS HL+ E+ +M++VE AE SGVWPV +TE + ++V D R+RT+E D+ VK D V G +SRRLT +NFMC+
Sbjct: 63 VFKLPRGNGDQSTTVAVRLGNADNWVITSVNPERQTSSCSRTQCQGLRAGLVAQQQTAGSHGGVASAIGGLCKHAKAALEHMRKKTVKDAREVKGDGW---DWDAAKEHVATAKSDGHLSVVEHTVIMTMVERAEGSGVWPVYETEPNHFVVRDDRTRTSEHDYACVKYDTVEPGKSSRRLTPPKNFMCR 249
BLAST of mRNA_L-elsbetiae_contig144.3243.1 vs. uniprot
Match: D7G2H3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H3_ECTSI) HSP 1 Score: 198 bits (504), Expect = 3.670e-55 Identity = 102/122 (83.61%), Postives = 109/122 (89.34%), Query Frame = 2
Query: 1091 MTANTMKKATSVRSGGIARRDYDAAKELVKAAKSSSHLTTEEYNDVMSIVEGAERSGVWPVVDTERHQYMVLDMRSRTTELDWGSVKLDQVAGGGASRRLTSSRNFMCKAVKGEACTENKNK 1456
M ANTMK+ATSV GG++ RDY AAKELV AAK SHLT EE NDVMSIVEGAERSGVWPVV+TERHQYMVLDMRSRTTELDWGSVK DQV+ G ASRR+TSSR+FMCKAVKGEACTENKNK
Sbjct: 1 MAANTMKRATSV-LGGVSSRDYAAAKELVTAAKLGSHLTAEECNDVMSIVEGAERSGVWPVVETERHQYMVLDMRSRTTELDWGSVKFDQVSEGEASRRMTSSRHFMCKAVKGEACTENKNK 121
BLAST of mRNA_L-elsbetiae_contig144.3243.1 vs. uniprot
Match: A0A6H5JLK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK4_9PHAE) HSP 1 Score: 198 bits (503), Expect = 4.790e-55 Identity = 99/149 (66.44%), Postives = 113/149 (75.84%), Query Frame = 1
Query: 1588 TPRMLLDEDAELYRSRLADLLAYLRRFALPSTAPSGLARLSEKPPRRFVVSQTRCTCGGELLAEKDVDGTLVTEAPLIVSVKVERRKCTSCGACAWASDNWRETSVFNYNNNHLVELSLLYKCLDQFTTGTTIQSFFVAHLGPLKKNIG 2034
TPR+ LD DAE + S+LAD+L Y+RR ALP TAPSGLAR+S P RR VVSQT+CTCGGELL E DV+ TLVTE VERRKC +CGACAWASDN R+TSVFN N LV+LSLLYKC QF GTTIQSFF +H+ PL N+G
Sbjct: 104 TPRVFLDSDAESFCSKLADMLTYMRRLALPPTAPSGLARISVTPARRLVVSQTKCTCGGELLPEADVNATLVTE--------VERRKCGTCGACAWASDNLRKTSVFNLKNYFLVKLSLLYKCFGQFIRGTTIQSFFFSHVEPLTTNVG 244
BLAST of mRNA_L-elsbetiae_contig144.3243.1 vs. uniprot
Match: A0A6H5L0Y4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y4_9PHAE) HSP 1 Score: 139 bits (349), Expect = 1.280e-33 Identity = 79/211 (37.44%), Postives = 109/211 (51.66%), Query Frame = 1
Query: 1450 EQKRSRCVHTLTVAVFSGIGLGWTASSTXXXXXXXXXXXXXSGVTNTPRMLLDEDAELYRSRLADLLAYLRRFALPSTAPSGLAR----LSEKPPRRFVVSQTRCT-CGGELLAEKD--VDGTLVTEAPLIVSVKVERRKCTSCGACAWASDNWRETSVFNYNNNHLVELSLLYKCLDQFTTGTTIQSFFVAHLGPLKKNIGWLRENPDLA 2061
E+K +C+HTL VA+ G G T + +LD+DA YR LA+ L + + P P GL R + + SQ C+ CG + E V T +TE P + V V +C +CG ASDNWRET +FNYNN++LVELS+LY+CL+ FT GTTI +FF L PL ++ W++ NPDL+
Sbjct: 21 EKKNRKCLHTLVVALALWHEEGMRDEGLGVGQVDVDGDRTPDGTPRTAQKMLDKDAPAYRKGLANCLNTMSVYKFPENLPFGLGRRGATTNANASITYTTSQKTCSGCGRDFPTENQHTVVATRLTEGPGMSKVNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVELSVLYRCLEAFTRGTTIGAFFETFLEPLGSDLVWIKANPDLS 231
BLAST of mRNA_L-elsbetiae_contig144.3243.1 vs. uniprot
Match: A0A6H5JWX4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX4_9PHAE) HSP 1 Score: 144 bits (364), Expect = 9.300e-33 Identity = 83/230 (36.09%), Postives = 119/230 (51.74%), Query Frame = 1
Query: 1450 EQKRSRCVHTLTVAVFSGIGLGWTASSTXXXXXXXXXXXXXSGVTNTPRMLLDEDAELYRSRLADLLAYLRRFALPSTAPSGLAR----LSEKPPRRFVVSQTRCT-CGGELLAEKD--VDGTLVTEAPLIVSVKVERRKCTSCGACAWASDNWRETSVFNYNNNHLVELSLLYKCLDQFTTGTTIQSFFVAHLGPLKKNIGWLRENPDLADSITDKDSRFFSTLSNVFL 2118
E+K +C+HTL VA+ G G T + +LD+DA YR LA+ L + + P P GL R + + SQ C+ CG + E V T +TE P + V V +C +CG ASDNWRET +FNYNN++LVELS+LY+CL+ FT GTTI +FF L PL ++ W++ NPDL+ + + + + L+N+FL
Sbjct: 146 EKKDRKCLHTLVVALALWQEEGMRDEGLGVGQVDMDGGRIPDGTPRTAQKMLDKDAPAYRKGLANCLNTMSVYKFPENLPFGLGRRGATTNANASITYTTSQKTCSGCGRDFHTENQHTVVATRLTEGPGMSKVNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVELSVLYRCLEAFTRGTTISAFFETFLEPLASDLVWIKANPDLSKRLAN-GTNLLNVLNNIFL 374
BLAST of mRNA_L-elsbetiae_contig144.3243.1 vs. uniprot
Match: A0A6H5JGH9_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH9_9PHAE) HSP 1 Score: 142 bits (358), Expect = 5.010e-32 Identity = 88/258 (34.11%), Postives = 130/258 (50.39%), Query Frame = 1
Query: 1366 GRGGVSKIDIFEELHVQGREGRGLHGKQEQKRSRCVHTLTVAVFSGIGLGWTASSTXXXXXXXXXXXXXSGVTNTPRMLLDEDAELYRSRLADLLAYLRRFALPSTAPSGLAR----LSEKPPRRFVVSQTRCT-CGGELLAEKD--VDGTLVTEAPLIVSVKVERRKCTSCGACAWASDNWRETSVFNYNNNHLVELSLLYKCLDQFTTGTTIQSFFVAHLGPLKKNIGWLRENPDLADSITDKDSRFFSTLSNVFL 2118
G+G + + L VQ + RG + E+K +C+HTL V + G G T + +LD+DA R LA+ L + + P P GL R + SQ C+ CG + AE V T +TE P + V V +C +CG AS+NWRET +FNYNN++LVELS+LY+CL+ FT GTTI +FF L PL ++ W++ NPDL++ + + + + L+N+FL
Sbjct: 48 GQGRIEEDHCCPGLDVQANQ-RGPCSEFEKKDRKCLHTLVVTLALWQEEGMRDEGLGVGQVDVDGGRIPDGTPRTAQKMLDKDAPACRKGLANCLNTMSVYKFPENLPFGLGRHGAITNANASITCTTSQNTCSGCGRDFPAENQHTVVATRLTEGPGMSKVNVHTNECETCGIHGLASENWRETGLFNYNNSYLVELSILYRCLEAFTRGTTISAFFETFLEPLASDLVWIKANPDLSNRLAN-GTNLLNVLNNIFL 303
BLAST of mRNA_L-elsbetiae_contig144.3243.1 vs. uniprot
Match: A0A6H5L2N5_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2N5_9PHAE) HSP 1 Score: 135 bits (341), Expect = 1.740e-31 Identity = 76/187 (40.64%), Postives = 108/187 (57.75%), Query Frame = 1
Query: 1588 TPRM---LLDEDAELYRSRLADLLAYLRRFALPSTAPSGLAR----LSEKPPRRFVVSQTRCT-CGGELLAEK--DVDGTLVTEAPLIVSVKVERRKCTSCGACAWASDNWRETSVFNYNNNHLVELSLLYKCLDQFTTGTTIQSFFVAHLGPLKKNIGWLRENPDLADSITDKDSRFFSTLSNVFL 2118
TPRM +LD+DA YR LA+ L + + P P GL R + + SQ C+ CG + AE +V T +TE + V V +C +CG ASDNWRET +FNYNN++LVELS+LY+CL+ FT GTTI +FF L PL ++ W++ NPDL+ + + + + L+N+FL
Sbjct: 22 TPRMAQKMLDKDAPAYRKGLANCLNTMSVYKFPENLPFGLGRRGATTNANASITYTTSQKACSGCGRDFPAENQHNVVATRLTEGSGMSKVNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVELSILYRCLEAFTRGTTISAFFETFLEPLASDLVWIKANPDLSKRLAN-GTNLLNVLNNIFL 207
BLAST of mRNA_L-elsbetiae_contig144.3243.1 vs. uniprot
Match: A0A6H5K6Y4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y4_9PHAE) HSP 1 Score: 138 bits (347), Expect = 8.920e-31 Identity = 78/216 (36.11%), Postives = 110/216 (50.93%), Query Frame = 1
Query: 1450 EQKRSRCVHTLTVAVFSGIGLGWTASSTXXXXXXXXXXXXXSGVTNTPRMLLDEDAELYRSRLADLLAYLRRFALPSTAPSGLAR----LSEKPPRRFVVSQTRCT-CGGELLAEKD--VDGTLVTEAPLIVSVKVERRKCTSCGACAWASDNWRETSVFNYNNNHLVELSLLYKCLDQFTTGTTIQSFFVAHLGPLKKNIGWLRENPDLADSITD 2076
E+K +C+HTL VA+ G G T + +LD+DA YR LA+ L + + P P GL R + + SQ C+ CG + V T +TE P + V V +C +CG ASDNWRET +FNYNN++LVELS+LY+CL+ FT GTTI +FF L PL ++ W++ NPDL+ + +
Sbjct: 63 EKKNRKCLHTLVVALALWQEEGMRDEGLGVGQVDVDGGRIPDGTPRTAQKMLDKDAPAYRKGLANCLNTMSVYKFPENLPFGLGRRGATTNANTSITYTTSQKTCSGCGRDFPTGNQYIVVATRLTEGPGMSKVNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVELSILYRCLEAFTRGTTISAFFETFLEPLASDLVWIKANPDLSTRLAN 278
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 116.3 |
Seed ortholog evalue | 4e-23 |
Seed eggNOG ortholog | 2880.D7FR86 |
Preferred name | ATG5 |
KEGG rclass | RC00055,RC00523 |
KEGG ko | ko:K01880,ko:K08339 |
KEGG Reaction | R03654 |
KEGG Pathway | ko00970,ko04136,ko04137,ko04138,ko04140,ko04211,ko04213,ko04216,ko04621,ko04622,ko05131,map00970,map04136,map04137,map04138,map04140,map04211,map04213,map04216,map04621,map04622,map05131 |
KEGG Module | M00359,M00360 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000045,GO:0000272,GO:0000407,GO:0000422,GO:0000423,GO:0001101,GO:0001775,GO:0001817,GO:0001974,GO:0002165,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002697,GO:0002700,GO:0002718,GO:0002739,GO:0002791,GO:0003008,GO:0003013,GO:0003015,GO:0003018,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005776,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006464,GO:0006497,GO:0006501,GO:0006807,GO:0006914,GO:0006950,GO:0006952,GO:0006995,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007423,GO:0007507,GO:0007552,GO:0007568,GO:0008015,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009251,GO:0009267,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009653,GO:0009791,GO:0009886,GO:0009888,GO:0009892,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0010039,GO:0010040,GO:0010150,GO:0010522,GO:0010605,GO:0010623,GO:0010639,GO:0010941,GO:0010959,GO:0012501,GO:0012506,GO:0014706,GO:0015980,GO:0016020,GO:0016032,GO:0016043,GO:0016052,GO:0016236,GO:0016237,GO:0018410,GO:0019058,GO:0019079,GO:0019222,GO:0019538,GO:0019725,GO:0019882,GO:0019883,GO:0022411,GO:0022607,GO:0030097,GO:0030098,GO:0030100,GO:0030139,GO:0030154,GO:0030217,GO:0030234,GO:0030424,GO:0030435,GO:0030587,GO:0030659,GO:0030666,GO:0030670,GO:0031056,GO:0031057,GO:0031090,GO:0031288,GO:0031323,GO:0031324,GO:0031344,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032258,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033077,GO:0033365,GO:0033554,GO:0034045,GO:0034274,GO:0034613,GO:0034645,GO:0034727,GO:0034762,GO:0034765,GO:0035051,GO:0035065,GO:0035067,GO:0035069,GO:0035096,GO:0035150,GO:0035296,GO:0035973,GO:0036211,GO:0039689,GO:0039694,GO:0042110,GO:0042157,GO:0042158,GO:0042221,GO:0042311,GO:0042493,GO:0042592,GO:0042594,GO:0042692,GO:0042742,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043269,GO:0043383,GO:0043412,GO:0043562,GO:0043583,GO:0043687,GO:0043934,GO:0044042,GO:0044085,GO:0044087,GO:0044093,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044804,GO:0044805,GO:0045058,GO:0045060,GO:0045061,GO:0045321,GO:0045335,GO:0045806,GO:0046649,GO:0048366,GO:0048367,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048646,GO:0048707,GO:0048731,GO:0048738,GO:0048771,GO:0048827,GO:0048839,GO:0048840,GO:0048856,GO:0048869,GO:0050707,GO:0050708,GO:0050764,GO:0050765,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0050832,GO:0050878,GO:0050880,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051051,GO:0051128,GO:0051129,GO:0051146,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051279,GO:0051282,GO:0051409,GO:0051641,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0051924,GO:0055001,GO:0055002,GO:0055006,GO:0055007,GO:0055012,GO:0055013,GO:0055015,GO:0055114,GO:0060033,GO:0060047,GO:0060255,GO:0060341,GO:0060491,GO:0060537,GO:0060548,GO:0060627,GO:0061061,GO:0061709,GO:0061723,GO:0061726,GO:0061739,GO:0061912,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070255,GO:0070257,GO:0070727,GO:0070925,GO:0071496,GO:0071500,GO:0071704,GO:0071840,GO:0072359,GO:0072665,GO:0075044,GO:0075071,GO:0080090,GO:0090066,GO:0090087,GO:0090239,GO:0090241,GO:0090693,GO:0090702,GO:0097014,GO:0097458,GO:0097708,GO:0097746,GO:0097755,GO:0098542,GO:0098588,GO:0098772,GO:0098805,GO:0099120,GO:0099402,GO:0099568,GO:0120025,GO:0120032,GO:0120035,GO:0120038,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901983,GO:1901984,GO:1902017,GO:1902115,GO:1902275,GO:1902494,GO:1902617,GO:1903008,GO:1903169,GO:1903320,GO:1903321,GO:1903530,GO:1904062,GO:1905037,GO:1905268,GO:1990234,GO:2000377,GO:2000378,GO:2000618,GO:2000619,GO:2000756,GO:2000757,GO:2001251 |
EggNOG free text desc. | process utilizing autophagic mechanism |
EggNOG OGs | KOG2976@1,KOG2976@2759 |
EC | 6.1.1.14 |
COG Functional cat. | O |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029,ko04131 |
Exons | 6 |
Model size | 2120 |
Cds size | 1461 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815576.106575-UTR-L-elsbetiae_contig144:15164..15218 | 1622815576.106575-UTR-L-elsbetiae_contig144:15164..15218 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig144 15165..15218 - |
1691682969.1181617-UTR-L-elsbetiae_contig144:15164..15218 | 1691682969.1181617-UTR-L-elsbetiae_contig144:15164..15218 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig144 15165..15218 - |
1622815576.119608-UTR-L-elsbetiae_contig144:15849..16106 | 1622815576.119608-UTR-L-elsbetiae_contig144:15849..16106 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig144 15850..16106 - |
1691682969.1356633-UTR-L-elsbetiae_contig144:15849..16106 | 1691682969.1356633-UTR-L-elsbetiae_contig144:15849..16106 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig144 15850..16106 - |
1622815576.131357-UTR-L-elsbetiae_contig144:16365..16691 | 1622815576.131357-UTR-L-elsbetiae_contig144:16365..16691 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig144 16366..16691 - |
1691682969.1457283-UTR-L-elsbetiae_contig144:16365..16691 | 1691682969.1457283-UTR-L-elsbetiae_contig144:16365..16691 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig144 16366..16691 - |
1622815576.1946545-UTR-L-elsbetiae_contig144:19425..19447 | 1622815576.1946545-UTR-L-elsbetiae_contig144:19425..19447 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig144 19426..19447 - |
1691682969.2015362-UTR-L-elsbetiae_contig144:19425..19447 | 1691682969.2015362-UTR-L-elsbetiae_contig144:19425..19447 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig144 19426..19447 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815576.141859-CDS-L-elsbetiae_contig144:16691..16757 | 1622815576.141859-CDS-L-elsbetiae_contig144:16691..16757 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig144 16692..16757 - |
1691682969.1572025-CDS-L-elsbetiae_contig144:16691..16757 | 1691682969.1572025-CDS-L-elsbetiae_contig144:16691..16757 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig144 16692..16757 - |
1622815576.152817-CDS-L-elsbetiae_contig144:17135..17568 | 1622815576.152817-CDS-L-elsbetiae_contig144:17135..17568 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig144 17136..17568 - |
1691682969.1686373-CDS-L-elsbetiae_contig144:17135..17568 | 1691682969.1686373-CDS-L-elsbetiae_contig144:17135..17568 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig144 17136..17568 - |
1622815576.1658216-CDS-L-elsbetiae_contig144:17822..18113 | 1622815576.1658216-CDS-L-elsbetiae_contig144:17822..18113 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig144 17823..18113 - |
1691682969.183139-CDS-L-elsbetiae_contig144:17822..18113 | 1691682969.183139-CDS-L-elsbetiae_contig144:17822..18113 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig144 17823..18113 - |
1622815576.1841042-CDS-L-elsbetiae_contig144:18754..19425 | 1622815576.1841042-CDS-L-elsbetiae_contig144:18754..19425 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig144 18755..19425 - |
1691682969.1922598-CDS-L-elsbetiae_contig144:18754..19425 | 1691682969.1922598-CDS-L-elsbetiae_contig144:18754..19425 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig144 18755..19425 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig144.3243.1 >prot_L-elsbetiae_contig144.3243.1 ID=prot_L-elsbetiae_contig144.3243.1|Name=mRNA_L-elsbetiae_contig144.3243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=487bp
MAEQRPPPLPPAGSTSRAAAGLIPGALSAAAAPSTAAAAAAAAPPTASPA QTQTTPTTAAAAAPTPPVPPSRTTALAVQRPPVLILPRPGPNGRGGLPAS PAAGRGGSDERQSTAPRGRGRHHAPGRGGLGRAPVPGQQPGRVETQKRQR YTKWNQQCAMCNQGESGYGKRLKLCEDNQKCGRWVHKSKERNCFAVLFHT RATAVQARCCMHHQSLKGACRCHSCNTTKRKAVEARGGGGAGAGRGRGHG RGGASRSGQGRGRGRGGPPPGPRGKVYELPLRAGDESTTVAVRAGNAGVY VVTCVNRQRKTSSCSRTDCQGFRAGFVSQQQTVESHGGVSSAVGSLCAHA KLALEHMTANTMKKATSVRSGGIARRDYDAAKELVKAAKSSSHLTTEEYN DVMSIVEGAERSGVWPVVDTERHQYMVLDMRSRTTELDWGSVKLDQVAGG GASRRLTSSRNFMCKAVKGEACTENKNKNGQGASTR* back to topmRNA from alignment at L-elsbetiae_contig144:15165..19447- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig144.3243.1 ID=mRNA_L-elsbetiae_contig144.3243.1|Name=mRNA_L-elsbetiae_contig144.3243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4283bp|location=Sequence derived from alignment at L-elsbetiae_contig144:15165..19447- (Laminarionema elsbetiae ELsaHSoW15) GGCCGCATTGCGCTGCGTACCCATGGCTGAGCAGCGACCACCGCCGCTTC
CACCCGCGGGTTCAACGAGTCGTGCTGCTGCAGGTCTCATTCCCGGAGCC
CTGTCCGCGGCTGCAGCACCCAGTACCGCAGCAGCTGCTGCTGCAGCGGC
TCCACCCACAGCATCACCGGCTCAAACGCAAACCACCCCTACTACAGCAG
CCGCAGCAGCACCAACGCCTCCAGTACCACCGTCGCGAACTACCGCGCTA
GCGGTACAGCGTCCGCCGGTACTGATTCTTCCTCGCCCAGGCCCTAATGG
CCGCGGCGGGCTACCGGCCTCGCCGGCAGCAGGACGTGGCGGGTCCGATG
AACGCCAGTCAACGGCGCCACGGGGACGGGGGCGGCACCACGCACCCGGT
CGTGGAGGCCTGGGCCGTGCTCCAGTGCCAGGGCAGCAGCCAGGGCGTGT
GGAGACGCAGAAGAGACAGCGCTACACGAAATGGAACCAGCAGTGTGCGA
TGTGCAACCAAGGGGAGTCTGGCTATGGGAAAAGATTGAAGCTGTGCGAG
GATAACCAGAAGTGCGGGAGATGGGTCCATAAGTCGAAGGAACGCAACTG
CTTCGCCGTCCTCTTCCACACCCGCGCAACGGCGGTGCAGGCGAGGTGCT
GCATGCACCACCAGAGCTTGAAGGGCGCATGCCGCTGCCACAGGTATGTG
CCATCCTTAGAGACACTGCTGCTCGTTGTGTAGCCCGTTTGAGCAGAGGA
CATGAGGCGGCGCCGTCTGTCCCAGTAGGCGCATGATCCAGCGGCAGAGC
AGAGCTCCCGAAGCTCTGCCGCGACTCCATGTTTTTTGTTATTTTCTATT
TTCCACTCGTACGCTCGGTAGAGTCGCCCGTCTACATCACTTGGTATATT
CATAGTGCACGCATCGTTCGTTGTGTTGTTTTGTCGCTGAATACCTGGTA
CACCTTGTGAAGTACGCCTGTTGCAGTGTCGAGGGCGTTGCTGTGGGTGG
CACCAATTTATTTCGGTGGAACCTTAACCTTTTCCACCTTTTTGCGCACG
GCCATCCCGCATCGCCTGGAAGCGAGCCCCTGTTTTTGCTGTCGATGTGG
TTCTAAGAAAGTAAGACAGCAGACTCTGCTCGTCGATTTGCTTTGAATTT
GTGAAACAGAATCCTATTCACGAAGCGTGCACCGATTCGTGTACCGCGTC
TTTGCGTCGGCCCCGTTGCTTCGATCCCGTGGGTGCCTTTGCTTGCAAGT
CAAAACCCCTGTCCTGACCTATGTCGTCATCCTCATCCTAAACCGTCGCC
ACGCCCTTGTTTTTTCTCCGCCGCACGGATCCAGTTGTAACACGACCAAG
CGCAAGGCTGTTGAGGCTCGAGGGGGGGGTGGGGCTGGCGCGGGACGAGG
GAGAGGGCACGGACGTGGAGGCGCAAGTCGGAGTGGGCAAGGGCGAGGGC
GCGGCAGAGGTGGGCCGCCGCCGGGGCCGCGGGGGAAAGTGTACGAGTTG
CCGTTGCGCGCTGGCGACGAGAGCACCACGGTTGCTGTTCGAGCCGGGAA
TGCTGGAGTTTATGTTGTGACCTGTGTGAACCGGCAGCGCAAAACTTCCA
GCTGCTCGAGGACAGACTGTCAAGGGTGAGACAAAGGGTCGTGCTGTTCG
ACGCGTGCAACATTGCTTCCTGCCCCTGCGTGTTTTTCGCACAATCGTTG
AAATGTATCGCGTTGGGAAAGAGATACGTGGTGACATGTATGTAACGCAG
ACTTTTGGGTCGGTATGGAGTTGGAAGCTAAACTACCGTCGGCACCCGAT
ACGTTTTTGTGAAGACGGATCGATTTCTCGCCAACAGCGCCTATCGCCAC
CTCACCTCGTTTATTGTTTTTCCTCACAGGTTTAGGGCGGGTTTCGTATC
ACAGCAACAAACGGTGGAGAGTCACGGTGGGGTGTCCAGCGCCGTCGGAA
GCCTGTGCGCGCACGCCAAGTTGGCGTTAGAGCACATGACGGCGAACACG
ATGAAGAAAGCAACCAGCGTGCGAAGTGGGGGGATCGCAAGGAGAGACTA
CGACGCAGCGAAGGAGCTTGTGAAAGCAGCGAAGTCGAGCAGTCACTTGA
CGACCGAAGAATACAACGATGTCATGTCCATAGTGGAAGGAGCGGAGCGG
AGTGGCGTGTGGCCGGTGGTGGACACGGAAAGGCACCAGTATATGGTTCT
CGACATGCGGAGTCGAACGACGGAGCTCGACTGGGGGTCCGTCAAACTCG
ATCAAGTTGCGGGAGGGGGGGCGTCTCGAAGATTGACATCTTCGAGGAAC
TTCATGTGCAAGGTAAGGGTTACGAAAAGTGTGCACACTCATCATAGCTA
TCGAACGCCGGCGAAACGATGTATGGGGCACGAACATGAGTTTGTTGTCA
TGAGGCGCGGGCGGCGGGTGAGCGAGTTTTGTCTTTGGTGTTGGGTGACA
AAGCACAGACTGCTCTGATTTATAGAAGTTCTGCGGTTGTGGCAGTAGCA
TGTCAGAAGCCCAGGTCGCCCTCCCCTTCGATGAACATGTAAATCAGTAC
TGCTCTGGCGGACCTGTTCGCAGTTTCCTGCAGTGTTTGCATCGCCAAAG
GTCGAGATTACTTTTACCCTTGCGGTTTTCTTACTTGTCTCTGGGACCTT
GTGTCTGATTCCGTCATGCACCCTCCGTACGTAACCCCAGGCCGTGAAGG
GAGAGGCCTGCACGGAAAACAAGAACAAAAACGGTCAAGGTGCGTCCACA
CGTTGACCGTTGCTGTCTTTTCCGGCATTGGGTTGGGTTGGACGGCGTCG
AGTACCGGAGGAGGTGGAGCAGCAGCGGGTGCTTCTTCGGGTGGGTCTGG
TGTGACGAATACTCCACGGATGCTACTCGACGAGGACGCCGAGTTGTACC
GCTCAAGACTGGCGGACTTGCTTGCCTACCTTCGGCGGTTCGCTCTTCCA
TCAACCGCTCCGTCCGGACTGGCGCGCCTCTCGGAGAAACCGCCGAGAAG
GTTTGTCGTCTCTCAAACGAGGTGCACCTGCGGGGGTGAGCTCCTTGCCG
AGAAGGACGTGGATGGGACGCTTGTGACCGAGGTAAGGCGTGGGTTTGGG
CTCTGTTGTTGGTCGGGTTTCTCTGAAGTTGTGTGACGAGACCTCTCGCT
TCACATGTTACTCCTGAAGTGGTCGATTGCGTGTGCTCGATGTCGAAACT
ACCGTTATATCGTTGTACCATAGGCTGAGGTACACAGGCTGAGGATGAAG
GTCTCGTGGTAGGACGATATCGCGTCGTTGAAATTTCTCCCTGGACGATG
TCTCCTTTCCCGCGGCCATTGGGCCACGTGATGCGTCGCAGGCGCCGCTA
ATTGTGAGCGTGAAGGTAGAGCGCCGGAAGTGTACTTCATGTGGAGCGTG
CGCGTGGGCAAGCGACAACTGGCGGGAGACATCCGTGTTCAACTACAACA
ACAACCATCTGGTGGAGCTCTCGCTTCTGTACAAGTGCCTCGACCAGTTC
ACCACAGGGACAACGATCCAGTCCTTTTTCGTCGCGCACTTGGGGCCCCT
GAAGAAAAACATCGGGTGGCTGCGGGAGAACCCGGACCTCGCAGATAGGT
GTGATGCCATGTGGGATTGTCAAGAGTGCCCTGTACATGCGATACGAGTG
TTCGACGACTATAGTTGAAATCTGGAAGGGTACGGGGTTTGCGAAGTCGC
CATTGGGACGTACTGCTACGTTTTTTTGTTTCGTTGCAATCTCATGGCGT
ATAGCCATTTGGTGGACACAGGACTCGTCCTCGCACCGTCCCCATGGTCG
CGGCAGGGAGGTGTAGGGGGGGAGGTCTCAACGCCGATCAATTTTGCAAC
ATATGGTGGATGCGCTAACAGTCGGCGGTGGGAATAACAAATCTACGTTC
GTGTGATAAAGGCCAGATTCTTTGCTTGTTTCATAGAGGTCCCAGCGTAC
TCGGTAGTACGTACAACGAACCGCTTTAGCTGCTGTAGGGTGCAGATGTC
TCTCTCGCAGGCAGAATTCCTGATAGTGGAGTGTTTAACTGTACGGCCGC
CCAAAGGAAGAACGCGATATAAAAACTCCGACAAGACAGGCATGCTGCAT
ATTGTACCATTCAACAAAAAAAGGATAGGGTTTTGTTTTGGTGCAAGACG
AATCGCCTTGAACTACCTCGTGGTGAAACAGCATCTGCCGCCCTTCCCTC
TGCTGCTGTGTGTGCGTTGCTAGACGCAGTATCACCGATAAAGACTCCAG
GTTCTTCAGTACGCTCAGCAACGTATTCCTCGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig144:15165..19447- >mRNA_L-elsbetiae_contig144.3243.1 ID=mRNA_L-elsbetiae_contig144.3243.1|Name=mRNA_L-elsbetiae_contig144.3243.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2922bp|location=Sequence derived from alignment at L-elsbetiae_contig144:15165..19447- (Laminarionema elsbetiae ELsaHSoW15) ATGGCTGAGCAGCGACCACCGCCGCTTCCACCCGCGGGTTCAACGAGTCG TGCTGCTGCAGGTCTCATTCCCGGAGCCCTGTCCGCGGCTGCAGCACCCA GTACCGCAGCAGCTGCTGCTGCAGCGGCTCCACCCACAGCATCACCGGCT CAAACGCAAACCACCCCTACTACAGCAGCCGCAGCAGCACCAACGCCTCC AGTACCACCGTCGCGAACTACCGCGCTAGCGGTACAGCGTCCGCCGGTAC TGATTCTTCCTCGCCCAGGCCCTAATGGCCGCGGCGGGCTACCGGCCTCG CCGGCAGCAGGACGTGGCGGGTCCGATGAACGCCAGTCAACGGCGCCACG GGGACGGGGGCGGCACCACGCACCCGGTCGTGGAGGCCTGGGCCGTGCTC CAGTGCCAGGGCAGCAGCCAGGGCGTGTGGAGACGCAGAAGAGACAGCGC TACACGAAATGGAACCAGCAGTGTGCGATGTGCAACCAAGGGGAGTCTGG CTATGGGAAAAGATTGAAGCTGTGCGAGGATAACCAGAAGTGCGGGAGAT GGGTCCATAAGTCGAAGGAACGCAACTGCTTCGCCGTCCTCTTCCACACC CGCGCAACGGCGGTGCAGGCGAGGTGCTGCATGCACCACCAGAGCTTGAA GGGCGCATGCCGCTGCCACAGATGGCTGAGCAGCGACCACCGCCGCTTCC ACCCGCGGGTTCAACGAGTCGTGCTGCTGCAGGTCTCATTCCCGGAGCCC TGTCCGCGGCTGCAGCACCCAGTACCGCAGCAGCTGCTGCTGCAGCGGCT CCACCCACAGCATCACCGGCTCAAACGCAAACCACCCCTACTACAGCAGC CGCAGCAGCACCAACGCCTCCAGTACCACCGTCGCGAACTACCGCGCTAG CGGTACAGCGTCCGCCGGTACTGATTCTTCCTCGCCCAGGCCCTAATGGC CGCGGCGGGCTACCGGCCTCGCCGGCAGCAGGACGTGGCGGGTCCGATGA ACGCCAGTCAACGGCGCCACGGGGACGGGGGCGGCACCACGCACCCGGTC GTGGAGGCCTGGGCCGTGCTCCAGTGCCAGGGCAGCAGCCAGGGCGTGTG GAGACGCAGAAGAGACAGCGCTACACGAAATGGAACCAGCAGTGTGCGAT GTGCAACCAAGGGGAGTCTGGCTATGGGAAAAGATTGAAGCTGTGCGAGG ATAACCAGAAGTGCGGGAGATGGGTCCATAAGTCGAAGGAACGCAACTGC TTCGCCGTCCTCTTCCACACCCGCGCAACGGCGGTGCAGGCGAGGTGCTG CATGCACCACCAGAGCTTGAAGGGCGCATGCCGCTGCCACAGTTGTAACA CGACCAAGCGCAAGGCTGTTGAGGCTCGAGGGGGGGGTGGGGCTGGCGCG GGACGAGGGAGAGGGCACGGACGTGGAGGCGCAAGTCGGAGTGGGCAAGG GCGAGGGCGCGGCAGAGGTGGGCCGCCGCCGGGGCCGCGGGGGAAAGTGT ACGAGTTGCCGTTGCGCGCTGGCGACGAGAGCACCACGGTTGCTGTTCGA GCCGGGAATGCTGGAGTTTATGTTGTGACCTGTGTGAACCGGCAGCGCAA AACTTCCAGCTGCTCGAGGACAGACTGTCAAGGTTGTAACACGACCAAGC GCAAGGCTGTTGAGGCTCGAGGGGGGGGTGGGGCTGGCGCGGGACGAGGG AGAGGGCACGGACGTGGAGGCGCAAGTCGGAGTGGGCAAGGGCGAGGGCG CGGCAGAGGTGGGCCGCCGCCGGGGCCGCGGGGGAAAGTGTACGAGTTGC CGTTGCGCGCTGGCGACGAGAGCACCACGGTTGCTGTTCGAGCCGGGAAT GCTGGAGTTTATGTTGTGACCTGTGTGAACCGGCAGCGCAAAACTTCCAG CTGCTCGAGGACAGACTGTCAAGGGTTTAGGGCGGGTTTCGTATCACAGC AACAAACGGTGGAGAGTCACGGTGGGGTGTCCAGCGCCGTCGGAAGCCTG TGCGCGCACGCCAAGTTGGCGTTAGAGCACATGACGGCGAACACGATGAA GAAAGCAACCAGCGTGCGAAGTGGGGGGATCGCAAGGAGAGACTACGACG CAGCGAAGGAGCTTGTGAAAGCAGCGAAGTCGAGCAGTCACTTGACGACC GAAGAATACAACGATGTCATGTCCATAGTGGAAGGAGCGGAGCGGAGTGG CGTGTGGCCGGTGGTGGACACGGAAAGGCACCAGTATATGGTTCTCGACA TGCGGAGTCGAACGACGGAGCTCGACTGGGGGTCCGTCAAACTCGATCAA GTTGCGGGAGGGGGGGCGTCTCGAAGATTGACATCTTCGAGGAACTTCAT GTGCAAGGTTTAGGGCGGGTTTCGTATCACAGCAACAAACGGTGGAGAGT CACGGTGGGGTGTCCAGCGCCGTCGGAAGCCTGTGCGCGCACGCCAAGTT GGCGTTAGAGCACATGACGGCGAACACGATGAAGAAAGCAACCAGCGTGC GAAGTGGGGGGATCGCAAGGAGAGACTACGACGCAGCGAAGGAGCTTGTG AAAGCAGCGAAGTCGAGCAGTCACTTGACGACCGAAGAATACAACGATGT CATGTCCATAGTGGAAGGAGCGGAGCGGAGTGGCGTGTGGCCGGTGGTGG ACACGGAAAGGCACCAGTATATGGTTCTCGACATGCGGAGTCGAACGACG GAGCTCGACTGGGGGTCCGTCAAACTCGATCAAGTTGCGGGAGGGGGGGC GTCTCGAAGATTGACATCTTCGAGGAACTTCATGTGCAAGGCCGTGAAGG GAGAGGCCTGCACGGAAAACAAGAACAAAAACGGTCAAGGTGCGTCCACA CGTTGAGCCGTGAAGGGAGAGGCCTGCACGGAAAACAAGAACAAAAACGG TCAAGGTGCGTCCACACGTTGA back to top
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