mRNA_L-elsbetiae_contig144.3244.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig144.3244.1
Unique NamemRNA_L-elsbetiae_contig144.3244.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig144.3244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig144contigL-elsbetiae_contig144:19804..20693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size313
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig144.3244.1prot_L-elsbetiae_contig144.3244.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig144 19849..20623 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.7877073-UTR-L-elsbetiae_contig144:19803..198481622815575.7877073-UTR-L-elsbetiae_contig144:19803..19848Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig144 19804..19848 +
1691682968.9632368-UTR-L-elsbetiae_contig144:19803..198481691682968.9632368-UTR-L-elsbetiae_contig144:19803..19848Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig144 19804..19848 +
1622815575.8498664-UTR-L-elsbetiae_contig144:20623..206931622815575.8498664-UTR-L-elsbetiae_contig144:20623..20693Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig144 20624..20693 +
1691682969.0001967-UTR-L-elsbetiae_contig144:20623..206931691682969.0001967-UTR-L-elsbetiae_contig144:20623..20693Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig144 20624..20693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.802199-CDS-L-elsbetiae_contig144:19848..198871622815575.802199-CDS-L-elsbetiae_contig144:19848..19887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 19849..19887 +
1691682968.9732397-CDS-L-elsbetiae_contig144:19848..198871691682968.9732397-CDS-L-elsbetiae_contig144:19848..19887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 19849..19887 +
1622815575.81681-CDS-L-elsbetiae_contig144:20164..203121622815575.81681-CDS-L-elsbetiae_contig144:20164..20312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 20165..20312 +
1691682968.9821737-CDS-L-elsbetiae_contig144:20164..203121691682968.9821737-CDS-L-elsbetiae_contig144:20164..20312Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 20165..20312 +
1622815575.8305426-CDS-L-elsbetiae_contig144:20612..206231622815575.8305426-CDS-L-elsbetiae_contig144:20612..20623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 20613..20623 +
1691682968.9913986-CDS-L-elsbetiae_contig144:20612..206231691682968.9913986-CDS-L-elsbetiae_contig144:20612..20623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig144 20613..20623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig144.3244.1

>prot_L-elsbetiae_contig144.3244.1 ID=prot_L-elsbetiae_contig144.3244.1|Name=mRNA_L-elsbetiae_contig144.3244.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
MSRPVSPVHHVMLFSPQHRRSEFTSRRSLFLSRRRVLDPLLLEEVHVLLR
REDRYVCGDRTADLS*
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mRNA from alignment at L-elsbetiae_contig144:19804..20693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig144.3244.1 ID=mRNA_L-elsbetiae_contig144.3244.1|Name=mRNA_L-elsbetiae_contig144.3244.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=890bp|location=Sequence derived from alignment at L-elsbetiae_contig144:19804..20693+ (Laminarionema elsbetiae ELsaHSoW15)
TTCCAACTGACCATCGCACACCCCTCTGAAGAGCTTTCGGTATTCATGTC
CCGGCCCGTTTCGCCGGTGCATCATGTAATGTTGGTGAGTAGAGTACTAT
TGTTTGTTTTTGGTATTGGTGAAGTGTTTGAGGCGCGCAGAGTGACGAAG
AAATATACGGATTAGTTCGGATTTACAGCAGCACACCTCCAGCTCATGTG
CACAGGCAAAGGTGAGATACGGGTGCCTTTGGTTGATAATGTAGCCGCTG
TCGCCGACATCACTTCACCATCCCCTTTTATTCAGCTCTTCTTCTTCATG
AAGGCGCTCGTGTCCTTTCCCCCTTGCTCTCTCTCTCTCACACACACACA
CGACACAGTAGTTTTCTCCCCAGCACAGACGCTCTGAATTTACATCGCGG
CGCTCTCTCTTCCTGAGTCGGCGCCGCGTACTTGATCCGCTGCTTTTGGA
GGAGGTCCATGTGCTTCTTCGGCGGGAGGACAGATATGTGTGTGGTGACC
GCACAGCAGGTGAAGTTCTTGTACTGAGCGTGTGGTCTCATATTTCAACG
CGACACGTGCGCGTGCCACAAGATACACTCAACTTGTCAGGAAAAGTACC
TGTTGGAGAGATCGAAACACGCGAGAGGTATAATTGGGAAGAGCAGAGAA
AACAAGGTCAATCGCGCCAACAGAGACCCCAGCACCACGGTCCTTGATTA
CACCTATCGCTAGCTGTCGTTTTCATTTGACAGGCTTTGGGGGAGAGAGA
GATACAAAATGGGACAGGTTTCACGCCCCGTTCCCACTCCCTACCCTACT
TCACCACAGATTTAAGCTAGCCACGAGCGACCGTCCGCACGCTCGTCGCG
CGTCCCCCTTTTTCGTCGCGGCTGGGTGTACCTGGACCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig144:19804..20693+

>mRNA_L-elsbetiae_contig144.3244.1 ID=mRNA_L-elsbetiae_contig144.3244.1|Name=mRNA_L-elsbetiae_contig144.3244.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig144:19804..20693+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCCGGCCCGTTTCGCCGGTGCATCATGTAATGTTGATGTCCCGGCC
CGTTTCGCCGGTGCATCATGTAATGTTGTTTTCTCCCCAGCACAGACGCT
CTGAATTTACATCGCGGCGCTCTCTCTTCCTGAGTCGGCGCCGCGTACTT
GATCCGCTGCTTTTGGAGGAGGTCCATGTGCTTCTTCGGCGGGAGGACAG
ATATGTGTGTGGTGACCGCACAGCAGTTTTCTCCCCAGCACAGACGCTCT
GAATTTACATCGCGGCGCTCTCTCTTCCTGAGTCGGCGCCGCGTACTTGA
TCCGCTGCTTTTGGAGGAGGTCCATGTGCTTCTTCGGCGGGAGGACAGAT
ATGTGTGTGGTGACCGCACAGCAGATTTAAGCTAGATTTAAGCTAG
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