prot_L-elsbetiae_contig14396.3240.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig14396.3240.1
Unique Nameprot_L-elsbetiae_contig14396.3240.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length127
Homology
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BLAST of mRNA_L-elsbetiae_contig14396.3240.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.540e-5
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0 
Query:    1 MKEGTDPDTFLAEVQDLANKLEYLGDGVSDARLADIVLQGLPPSY 45
            M+ GTDPD F+  V  LA +L ++G  V+D +L DI+LQGLP  Y
Sbjct:  263 MRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEY 307
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14396.3240.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE1.540e-551.11Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 1..56
e-value: 1.5E-8
score: 34.4
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 111..124
score: 9.109
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 92..124

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14396contigL-elsbetiae_contig14396:78..458 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14396.3240.1mRNA_L-elsbetiae_contig14396.3240.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig14396 69..458 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig14396.3240.1 ID=prot_L-elsbetiae_contig14396.3240.1|Name=mRNA_L-elsbetiae_contig14396.3240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MKEGTDPDTFLAEVQDLANKLEYLGDGVSDARLADIVLQGLPPSYDQLRL
MADMDSGFTFAKIERTARNMYKSHSRGRQQQRHGHQRDTPVRDSGMVAFS
SKPHGSTQLTCHSCGEPGHVQRFCQVY
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf