mRNA_L-elsbetiae_contig14396.3240.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14396.3240.1
Unique NamemRNA_L-elsbetiae_contig14396.3240.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14396.3240.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 9.080e-6
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 SIGMKEGTDPDTFLAEVQDLANKLEYLGDGVSDARLADIVLQGLPPSY 144
            S  M+ GTDPD F+  V  LA +L ++G  V+D +L DI+LQGLP  Y
Sbjct:  260 SATMRTGTDPDIFITHVWHLAEQLRFIGGTVTDEKLGDIILQGLPAEY 307
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14396.3240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE9.080e-650.00Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14396contigL-elsbetiae_contig14396:69..458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.690814-UTR-L-elsbetiae_contig14396:68..771622815575.690814-UTR-L-elsbetiae_contig14396:68..77Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14396 69..77 +
1691682968.9127903-UTR-L-elsbetiae_contig14396:68..771691682968.9127903-UTR-L-elsbetiae_contig14396:68..77Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14396 69..77 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.702316-CDS-L-elsbetiae_contig14396:77..4581622815575.702316-CDS-L-elsbetiae_contig14396:77..458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14396 78..458 +
1691682968.924862-CDS-L-elsbetiae_contig14396:77..4581691682968.924862-CDS-L-elsbetiae_contig14396:77..458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14396 78..458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14396.3240.1prot_L-elsbetiae_contig14396.3240.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14396 78..458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14396.3240.1

>prot_L-elsbetiae_contig14396.3240.1 ID=prot_L-elsbetiae_contig14396.3240.1|Name=mRNA_L-elsbetiae_contig14396.3240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MKEGTDPDTFLAEVQDLANKLEYLGDGVSDARLADIVLQGLPPSYDQLRL
MADMDSGFTFAKIERTARNMYKSHSRGRQQQRHGHQRDTPVRDSGMVAFS
SKPHGSTQLTCHSCGEPGHVQRFCQVY
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mRNA from alignment at L-elsbetiae_contig14396:69..458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14396.3240.1 ID=mRNA_L-elsbetiae_contig14396.3240.1|Name=mRNA_L-elsbetiae_contig14396.3240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig14396:69..458+ (Laminarionema elsbetiae ELsaHSoW15)
AGCATCGGCATGAAAGAGGGAACCGATCCCGACACTTTTCTCGCGGAAGT
TCAGGATCTGGCGAACAAGTTAGAGTACCTCGGCGACGGCGTTTCGGATG
CGCGTCTCGCCGACATCGTACTGCAAGGACTACCGCCGTCGTACGATCAA
CTGCGGCTGATGGCGGATATGGACTCCGGCTTCACCTTCGCGAAAATTGA
AAGGACTGCTCGGAACATGTACAAGAGCCACTCACGCGGTCGTCAACAGC
AACGCCACGGACACCAGCGCGACACACCCGTGAGGGATTCAGGTATGGTG
GCCTTTTCCTCGAAGCCCCACGGGTCGACGCAGCTTACTTGTCACAGCTG
CGGCGAGCCAGGTCACGTGCAGCGCTTTTGCCAAGTTTAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14396:69..458+

>mRNA_L-elsbetiae_contig14396.3240.1 ID=mRNA_L-elsbetiae_contig14396.3240.1|Name=mRNA_L-elsbetiae_contig14396.3240.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig14396:69..458+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGAGGGAACCGATCCCGACACTTTTCTCGCGGAAGTTCAGGATCT
GGCGAACAAGTTAGAGTACCTCGGCGACGGCGTTTCGGATGCGCGTCTCG
CCGACATCGTACTGCAAGGACTACCGCCGTCGTACGATCAACTGCGGCTG
ATGGCGGATATGGACTCCGGCTTCACCTTCGCGAAAATTGAAAGGACTGC
TCGGAACATGTACAAGAGCCACTCACGCGGTCGTCAACAGCAACGCCACG
GACACCAGCGCGACACACCCGTGAGGGATTCAGGTATGGTGGCCTTTTCC
TCGAAGCCCCACGGGTCGACGCAGCTTACTTGTCACAGCTGCGGCGAGCC
AGGTCACGTGCAGCGCTTTTGCCAAGTTTATATGAAAGAGGGAACCGATC
CCGACACTTTTCTCGCGGAAGTTCAGGATCTGGCGAACAAGTTAGAGTAC
CTCGGCGACGGCGTTTCGGATGCGCGTCTCGCCGACATCGTACTGCAAGG
ACTACCGCCGTCGTACGATCAACTGCGGCTGATGGCGGATATGGACTCCG
GCTTCACCTTCGCGAAAATTGAAAGGACTGCTCGGAACATGTACAAGAGC
CACTCACGCGGTCGTCAACAGCAACGCCACGGACACCAGCGCGACACACC
CGTGAGGGATTCAGGTATGGTGGCCTTTTCCTCGAAGCCCCACGGGTCGA
CGCAGCTTACTTGTCACAGCTGCGGCGAGCCAGGTCACGTGCAGCGCTTT
TGCCAAGTTTAT
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