prot_L-elsbetiae_contig14389.3237.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig14389.3237.1
Unique Nameprot_L-elsbetiae_contig14389.3237.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length78
Homology
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: D7FYR5_ECTSI (RNase_PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR5_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 4.320e-41
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 0
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGG 76
            SNGS RVTIAHNGTDVLAAVKVEVGEP L APGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSM+GVGG
Sbjct:   50 SNGSARVTIAHNGTDVLAAVKVEVGEPGLEAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMQGVGG 125          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A6H5JQU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU5_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 7.610e-41
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 0
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGG 76
            SNGS RVTIAHNGTDVLAAVKVEVGEP L APGAGRVEVC+SCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGG
Sbjct:   50 SNGSARVTIAHNGTDVLAAVKVEVGEPGLEAPGAGRVEVCISCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGG 125          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A835YWB1_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWB1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 2.640e-24
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 0
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSM 71
            +NGS R+TIAH GT+VLAAVK+E G P   AP  GRVEVCV CSNSLFP FD+RS GDVNA LS  L R++
Sbjct:   29 ANGSARITIAHGGTEVLAAVKIETGVPSADAPHEGRVEVCVECSNSLFPTFDDRSGGDVNAALSLMLARTV 99          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A7S0GZ67_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GZ67_9EUKA)

HSP 1 Score: 61.2 bits (147), Expect = 2.390e-9
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALER 69
            +NGS R+ + H  TDVL AVKV +GEPD+A P  GRVE  V+C+ S   +++ R +  +N  L+  L R
Sbjct:   24 ANGSARLQLDH--TDVLVAVKVAIGEPDVATPDQGRVECSVTCAPSASLRYEGRGAETLNVYLTSGLSR 90          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A0K9R238_SPIOL (Uncharacterized protein n=7 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0K9R238_SPIOL)

HSP 1 Score: 58.2 bits (139), Expect = 3.660e-8
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 0
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGGKS 78
            +NGS RV I   GTDV+A+VK E+G P+ A PG G+V + + CS +  P F  +    ++  L+  L+R +  +GGKS
Sbjct:   43 ANGSARVRIG--GTDVIASVKAELGRPNSAQPGKGKVSIHIDCSATAAPIFQGKGGEALSTELAADLQRCL--LGGKS 116          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A7S0XD23_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XD23_9CHLO)

HSP 1 Score: 52.8 bits (125), Expect = 3.420e-6
Identity = 27/74 (36.49%), Postives = 40/74 (54.05%), Query Frame = 0
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMRGV 74
            ++GS R+ +    TDV+ AVK ++G P    PG GR++  V  S S  P ++ R    +   L  ALERS+ G 
Sbjct:   44 ASGSARLRLGGGCTDVMVAVKADIGAPSKENPGHGRLQCSVELSASADPMYEGRGGDGLGVELGKALERSLLGA 117          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A061SH06_9CHLO (Exosome complex component RRP42 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SH06_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 1.120e-5
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 0
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSM 71
            ++GS+R  +    TDVL AVK EVGEP    P  G V V V  S    P+F+ R S ++ + L+ AL RS+
Sbjct:   41 ASGSSRFQLG--ATDVLVAVKAEVGEPTKERPDCGXVNVQVDISACASPEFEGRGSEELGSELAAALTRSI 109          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A5J4Y952_9CHLO (Exosome complex component RRP42-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y952_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 4.000e-5
Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 0
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSM 71
            ++GS R+ +    TDVL AVKVE+G P    P  G +   V CS    P+F  R   ++ A  +  LERSM
Sbjct:   41 ASGSARLKLG--ATDVLVAVKVELGTPTPDRPDCGNIFFAVECSPCANPQFQGRGGDELGAEFAKGLERSM 109          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A0D2MDY6_9CHLO (Exosome complex exonuclease RRP42 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MDY6_9CHLO)

HSP 1 Score: 49.7 bits (117), Expect = 4.190e-5
Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 0
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFD----ERSSGDVNAVLSGALERSMRGV 74
            +NGS+R+ +    TDV+A VKV +G+P+  AP  G+V V V CS+   P+F     ER      AV    L  S RG+
Sbjct:   44 ANGSSRLHVG--ATDVIAGVKVSLGQPEAGAPDKGQVFVSVECSSCASPEFKASPVERPGKGPAAVEQAGLRGSGRGL 119          
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A7S0H000_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0H000_MICPS)

HSP 1 Score: 49.7 bits (117), Expect = 4.300e-5
Identity = 28/74 (37.84%), Postives = 40/74 (54.05%), Query Frame = 0
Query:    1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMRGV 74
            ++GS R+ +    TDV+ AVK ++G P  A P  GR+   V  S S  PK++ R      A L+ ALER + G 
Sbjct:   80 ASGSARLRLGD--TDVMVAVKADIGTPPKAYPTHGRLSCAVELSASADPKYEGRGGEKAGAELARALERGLLGA 151          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FYR5_ECTSI4.320e-4194.74RNase_PH domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JQU5_9PHAE7.610e-4194.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YWB1_9STRA2.640e-2467.61Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A7S0GZ67_9EUKA2.390e-944.93Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A0K9R238_SPIOL3.660e-841.03Uncharacterized protein n=7 Tax=Chenopodiaceae Tax... [more]
A0A7S0XD23_9CHLO3.420e-636.49Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A061SH06_9CHLO1.120e-542.25Exosome complex component RRP42 n=1 Tax=Tetraselmi... [more]
A0A5J4Y952_9CHLO4.000e-539.44Exosome complex component RRP42-like n=1 Tax=Trebo... [more]
A0A0D2MDY6_9CHLO4.190e-539.74Exosome complex exonuclease RRP42 n=1 Tax=Monoraph... [more]
A0A7S0H000_MICPS4.300e-537.84Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027408PNPase/RNase PH domain superfamilyGENE3D3.30.230.70coord: 1..75
e-value: 3.0E-12
score: 48.5
NoneNo IPR availablePANTHERPTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINcoord: 1..71
NoneNo IPR availablePANTHERPTHR11097:SF8EXOSOME COMPLEX COMPONENT RRP42coord: 1..71
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 2..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14389contigL-elsbetiae_contig14389:272..867 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14389.3237.1mRNA_L-elsbetiae_contig14389.3237.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig14389 272..867 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig14389.3237.1 ID=prot_L-elsbetiae_contig14389.3237.1|Name=mRNA_L-elsbetiae_contig14389.3237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPK
FDERSSGDVNAVLSGALERSMRGVGGKS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027408PNPase/RNase_PH_dom_sf
IPR020568Ribosomal_S5_D2-typ_fold