mRNA_L-elsbetiae_contig14389.3237.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: D7FYR5_ECTSI (RNase_PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR5_ECTSI) HSP 1 Score: 143 bits (360), Expect = 4.320e-41 Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1 Query: 1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGG 228 SNGS RVTIAHNGTDVLAAVKVEVGEP L APGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSM+GVGG Sbjct: 50 SNGSARVTIAHNGTDVLAAVKVEVGEPGLEAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMQGVGG 125
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A6H5JQU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQU5_9PHAE) HSP 1 Score: 144 bits (363), Expect = 7.610e-41 Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1 Query: 1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGG 228 SNGS RVTIAHNGTDVLAAVKVEVGEP L APGAGRVEVC+SCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGG Sbjct: 50 SNGSARVTIAHNGTDVLAAVKVEVGEPGLEAPGAGRVEVCISCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGG 125
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A835YWB1_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWB1_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 2.640e-24 Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 1 Query: 1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSM 213 +NGS R+TIAH GT+VLAAVK+E G P AP GRVEVCV CSNSLFP FD+RS GDVNA LS L R++ Sbjct: 29 ANGSARITIAHGGTEVLAAVKIETGVPSADAPHEGRVEVCVECSNSLFPTFDDRSGGDVNAALSLMLARTV 99
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A7S0GZ67_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GZ67_9EUKA) HSP 1 Score: 61.2 bits (147), Expect = 2.390e-9 Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1 Query: 1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALER 207 +NGS R+ + H TDVL AVKV +GEPD+A P GRVE V+C+ S +++ R + +N L+ L R Sbjct: 24 ANGSARLQLDH--TDVLVAVKVAIGEPDVATPDQGRVECSVTCAPSASLRYEGRGAETLNVYLTSGLSR 90
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A0K9R238_SPIOL (Uncharacterized protein n=7 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0K9R238_SPIOL) HSP 1 Score: 58.2 bits (139), Expect = 3.660e-8 Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMRGVGGKS 234 +NGS RV I GTDV+A+VK E+G P+ A PG G+V + + CS + P F + ++ L+ L+R + +GGKS Sbjct: 43 ANGSARVRIG--GTDVIASVKAELGRPNSAQPGKGKVSIHIDCSATAAPIFQGKGGEALSTELAADLQRCL--LGGKS 116
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A7S0XD23_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0XD23_9CHLO) HSP 1 Score: 52.8 bits (125), Expect = 3.420e-6 Identity = 27/74 (36.49%), Postives = 40/74 (54.05%), Query Frame = 1 Query: 1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMRGV 222 ++GS R+ + TDV+ AVK ++G P PG GR++ V S S P ++ R + L ALERS+ G Sbjct: 44 ASGSARLRLGGGCTDVMVAVKADIGAPSKENPGHGRLQCSVELSASADPMYEGRGGDGLGVELGKALERSLLGA 117
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A061SH06_9CHLO (Exosome complex component RRP42 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SH06_9CHLO) HSP 1 Score: 51.2 bits (121), Expect = 1.120e-5 Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1 Query: 1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSM 213 ++GS+R + TDVL AVK EVGEP P G V V V S P+F+ R S ++ + L+ AL RS+ Sbjct: 41 ASGSSRFQLG--ATDVLVAVKAEVGEPTKERPDCGXVNVQVDISACASPEFEGRGSEELGSELAAALTRSI 109
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A5J4Y952_9CHLO (Exosome complex component RRP42-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y952_9CHLO) HSP 1 Score: 49.7 bits (117), Expect = 4.000e-5 Identity = 28/71 (39.44%), Postives = 38/71 (53.52%), Query Frame = 1 Query: 1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSM 213 ++GS R+ + TDVL AVKVE+G P P G + V CS P+F R ++ A + LERSM Sbjct: 41 ASGSARLKLG--ATDVLVAVKVELGTPTPDRPDCGNIFFAVECSPCANPQFQGRGGDELGAEFAKGLERSM 109
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A0D2MDY6_9CHLO (Exosome complex exonuclease RRP42 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MDY6_9CHLO) HSP 1 Score: 49.7 bits (117), Expect = 4.190e-5 Identity = 31/78 (39.74%), Postives = 43/78 (55.13%), Query Frame = 1 Query: 1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFD----ERSSGDVNAVLSGALERSMRGV 222 +NGS+R+ + TDV+A VKV +G+P+ AP G+V V V CS+ P+F ER AV L S RG+ Sbjct: 44 ANGSSRLHVG--ATDVIAGVKVSLGQPEAGAPDKGQVFVSVECSSCASPEFKASPVERPGKGPAAVEQAGLRGSGRGL 119
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Match: A0A7S0H000_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0H000_MICPS) HSP 1 Score: 49.7 bits (117), Expect = 4.300e-5 Identity = 28/74 (37.84%), Postives = 40/74 (54.05%), Query Frame = 1 Query: 1 SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKFDERSSGDVNAVLSGALERSMRGV 222 ++GS R+ + TDV+ AVK ++G P A P GR+ V S S PK++ R A L+ ALER + G Sbjct: 80 ASGSARLRLGD--TDVMVAVKADIGTPPKAYPTHGRLSCAVELSASADPKYEGRGGEKAGAELARALERGLLGA 151 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14389.3237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig14389.3237.1 >prot_L-elsbetiae_contig14389.3237.1 ID=prot_L-elsbetiae_contig14389.3237.1|Name=mRNA_L-elsbetiae_contig14389.3237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp SNGSTRVTIAHNGTDVLAAVKVEVGEPDLAAPGAGRVEVCVSCSNSLFPKback to top mRNA from alignment at L-elsbetiae_contig14389:272..867- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig14389.3237.1 ID=mRNA_L-elsbetiae_contig14389.3237.1|Name=mRNA_L-elsbetiae_contig14389.3237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=596bp|location=Sequence derived from alignment at L-elsbetiae_contig14389:272..867- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig14389:272..867- >mRNA_L-elsbetiae_contig14389.3237.1 ID=mRNA_L-elsbetiae_contig14389.3237.1|Name=mRNA_L-elsbetiae_contig14389.3237.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig14389:272..867- (Laminarionema elsbetiae ELsaHSoW15)back to top |