mRNA_L-elsbetiae_contig14388.3236.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14388.3236.1
Unique NamemRNA_L-elsbetiae_contig14388.3236.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14388.3236.1 vs. uniprot
Match: D8LAX7_ECTSI (Cell wall surface anchor family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX7_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 4.700e-20
Identity = 37/40 (92.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    4 AWVRLLERAPWSGRDGHAALAHNGAIFLMGGTQDPRSNFS 123
            AWVRLLE APWSGRDGHAAL HNGAIFLMGGTQDPR+NFS
Sbjct:   66 AWVRLLEHAPWSGRDGHAALTHNGAIFLMGGTQDPRNNFS 105
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BLAST of mRNA_L-elsbetiae_contig14388.3236.1 vs. uniprot
Match: A0A6H5JNX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNX3_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.130e-16
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    4 AWVRLLERAPWSGRDGHAALAHNGAIFLMGGTQDPRSN 117
            AWVRLLE APWSGRDGHAAL HNGAIFLMGGTQDPR+N
Sbjct:   66 AWVRLLEHAPWSGRDGHAALTHNGAIFLMGGTQDPRNN 103
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BLAST of mRNA_L-elsbetiae_contig14388.3236.1 vs. uniprot
Match: A0A835YGT5_9STRA (Cell wall surface anchor family protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGT5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 6.230e-11
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    7 WVRLLERAPWSGRDGHAALAHNGAIFLMGGTQDPRSN 117
            W ++  RAPWSGRDGH AL H G+I++MGGTQD RSN
Sbjct:   57 WSQITPRAPWSGRDGHVALEHLGSIYIMGGTQDLRSN 93
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BLAST of mRNA_L-elsbetiae_contig14388.3236.1 vs. uniprot
Match: A0A5S9NUV9_9GAMM (N-acetylneuraminate epimerase n=1 Tax=BD1-7 clade bacterium TaxID=2029982 RepID=A0A5S9NUV9_9GAMM)

HSP 1 Score: 48.5 bits (114), Expect = 3.930e-5
Identity = 21/53 (39.62%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:    1 QAWVRLL-ERAPWSGRDGHAALAHNGAIFLMGGTQDPRSNFSDVWRSANGRDW 156
            + W ++  E   W  R   +A +H G I+LMGG  D R+ F D+WRS +G+ W
Sbjct:  278 KTWQQITTEGRQWLARKALSAASHLGYIYLMGGENDARNAFDDLWRSIDGKKW 330
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BLAST of mRNA_L-elsbetiae_contig14388.3236.1 vs. uniprot
Match: A0A5S9P204_9GAMM (N-acetylneuraminate epimerase n=1 Tax=BD1-7 clade bacterium TaxID=2029982 RepID=A0A5S9P204_9GAMM)

HSP 1 Score: 48.1 bits (113), Expect = 5.380e-5
Identity = 21/53 (39.62%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:    1 QAWVRLL-ERAPWSGRDGHAALAHNGAIFLMGGTQDPRSNFSDVWRSANGRDW 156
            + W ++  E   W  R   +A +H G I+LMGG  D R+ F D+WRS +G+ W
Sbjct:  278 KTWQQVTTEGRQWLARKALSAASHLGYIYLMGGENDARNAFDDLWRSIDGKKW 330
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14388.3236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LAX7_ECTSI4.700e-2092.50Cell wall surface anchor family protein n=1 Tax=Ec... [more]
A0A6H5JNX3_9PHAE1.130e-1692.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YGT5_9STRA6.230e-1167.57Cell wall surface anchor family protein (Fragment)... [more]
A0A5S9NUV9_9GAMM3.930e-539.62N-acetylneuraminate epimerase n=1 Tax=BD1-7 clade ... [more]
A0A5S9P204_9GAMM5.380e-539.62N-acetylneuraminate epimerase n=1 Tax=BD1-7 clade ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14388contigL-elsbetiae_contig14388:3626..3781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.4298127-CDS-L-elsbetiae_contig14388:3625..37811622815575.4298127-CDS-L-elsbetiae_contig14388:3625..3781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14388 3626..3781 +
1691682968.7535975-CDS-L-elsbetiae_contig14388:3625..37811691682968.7535975-CDS-L-elsbetiae_contig14388:3625..3781Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14388 3626..3781 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14388.3236.1prot_L-elsbetiae_contig14388.3236.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14388 3626..3781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14388.3236.1

>prot_L-elsbetiae_contig14388.3236.1 ID=prot_L-elsbetiae_contig14388.3236.1|Name=mRNA_L-elsbetiae_contig14388.3236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=52bp
QAWVRLLERAPWSGRDGHAALAHNGAIFLMGGTQDPRSNFSDVWRSANGR
DW
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mRNA from alignment at L-elsbetiae_contig14388:3626..3781+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14388.3236.1 ID=mRNA_L-elsbetiae_contig14388.3236.1|Name=mRNA_L-elsbetiae_contig14388.3236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=156bp|location=Sequence derived from alignment at L-elsbetiae_contig14388:3626..3781+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCATGGGTGCGACTGCTCGAGCGCGCGCCTTGGAGTGGCAGAGATGG
CCACGCAGCGCTGGCTCACAACGGGGCTATCTTCCTCATGGGAGGCACGC
AAGACCCCCGCAGCAACTTCAGCGATGTCTGGAGATCGGCCAACGGCCGC
GATTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14388:3626..3781+

>mRNA_L-elsbetiae_contig14388.3236.1 ID=mRNA_L-elsbetiae_contig14388.3236.1|Name=mRNA_L-elsbetiae_contig14388.3236.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=312bp|location=Sequence derived from alignment at L-elsbetiae_contig14388:3626..3781+ (Laminarionema elsbetiae ELsaHSoW15)
CAGGCATGGGTGCGACTGCTCGAGCGCGCGCCTTGGAGTGGCAGAGATGG
CCACGCAGCGCTGGCTCACAACGGGGCTATCTTCCTCATGGGAGGCACGC
AAGACCCCCGCAGCAACTTCAGCGATGTCTGGAGATCGGCCAACGGCCGC
GATTGGCAGGCATGGGTGCGACTGCTCGAGCGCGCGCCTTGGAGTGGCAG
AGATGGCCACGCAGCGCTGGCTCACAACGGGGCTATCTTCCTCATGGGAG
GCACGCAAGACCCCCGCAGCAACTTCAGCGATGTCTGGAGATCGGCCAAC
GGCCGCGATTGG
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