mRNA_L-elsbetiae_contig1437.3227.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 186 bits (473), Expect = 2.460e-49 Identity = 137/293 (46.76%), Postives = 177/293 (60.41%), Query Frame = 2 Query: 617 LNTGTW---MHAIKMLLRAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGISGRPHLHCAVDNACLSSSRIMRLLVDAGADTYSAVQITSPFGMP-MRITPLDLTNSYLF--TKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAAAVEGTGKAKACSTPLASVLPILRQRAGRSRVLLAALFRNAKKP 1477 L T W + A ++LL A A+PLL S ++F+PLDAAAE GH EV ELI+++GI+GCGG+SGGV AL A + M +LT+AGVVDTG AL VA G +K LL+Q RA AA+VN+ G L + + R++RLLV+AGADT S V + + G + ITPL LT + + KV+ A+ EQLH LEAIRRLLLRVEA HAVSWLW SDIS++T AAA GT + A ST + + + R+RA +V LAAL R + KP Sbjct: 152 LYTAAWKGNVDAARLLLLAKADPLLTTVPDPSG----RTFLPLDAAAENGHPEVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQ-ARARKTMDEAAYVNTRDRGGVTPLLWGIQHY---RPRVVRLLVEAGADTTSPVAVRNQLGGDDVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDISTITRAAA-RGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLRYSSKP 435
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 167 bits (422), Expect = 2.080e-41 Identity = 122/279 (43.73%), Postives = 157/279 (56.27%), Query Frame = 2 Query: 644 IKMLLRAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGISGRPHLHCAVDNACLSSSRIMRLLVDAGADTYSAVQITS-PFGMPMRITPLDLTNSYLFTKVIR-GNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAAAVEGTGKAKACSTPLASVLPILRQRAGRSRVLLAALFRNAKK 1474 ++ LLR ANPLL TS PG + VPLD AA+ GH +V RELIQELGIEGC S G AL+ A ++Q + M +LT AGVVDTG AL +A G SVK LL+ + G A++N+ ++G L + RI+R+LVDAGADT S VQ+ + G+ TPL T L K++ G AT+E L LEAI RLLLRV+A HAVSWLW S + A + A L +LPIL++R R L+A L R + K Sbjct: 256 MRELLRGNANPLL---IQTSPPGN-TTTVPLDLAAKHGHTDVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGAYLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVVFNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAPFIGRATETDPEPPLPA----LKLMLPILKRRTKRRCGLVATLLRYSVK 526
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 164 bits (416), Expect = 3.780e-41 Identity = 128/300 (42.67%), Postives = 170/300 (56.67%), Query Frame = 2 Query: 590 THRRRCTSRLNTGTW---MHAIKMLLRAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGISGRPHLHCAVDNACLSSSRIMRLLVDAGADTYSAVQITSPFGMP-MRITPLDLTNSYLFTKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAAAVEGTGKAKACSTPLASVLPILRQRAGRSRV-LLAALFRNAKK 1474 T R + L T W + A+ +LL A A+PLL +S + + F+PLD AA+ GH EV ELI+++GI+GCGG+SGG +AL A + + M +LT AGVVDTG AL VA G +K LL+Q R AA++N+L G L +D R+++LLV+AGADT S V I + G ITPL LT L + + T E+ + LE IRRLLLR EA HAVSWLW SD ++THA A +GTG+ A ST + ++ R R R LLAAL R + K Sbjct: 143 TRRSDGATPLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGK----ERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLLEQ-ARGRKSTDRAAYMNTLNGVGLTSL---LDGIQRCRPRVVQLLVEAGADTTSPVLICNQPGEDDFHITPLGLTMCLLGGRSAKP--LTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPTITHATA-KGTGRTTATSTAATPFIMLMIGRRTRGRKGLLAALLRYSSK 431
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI) HSP 1 Score: 162 bits (411), Expect = 1.180e-40 Identity = 116/272 (42.65%), Postives = 146/272 (53.68%), Query Frame = 2 Query: 674 PLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGISGRPHLHCAVDNACLSSSRIMRLLVDAGADTYSAVQITSPFGMPMRITPLDLTNSYLFTKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAAAVEGTGKAKACST-----PLASVLPILRQRAGRSRVLLAALFRNAKK 1474 PLLP ++ + +FVPLD AA GHL VAREL+Q GI GC GAS GVDAL A Q + M +L AGVVDTG AL + G ++K LL+Q K + ++ A G P L C S R++RLLVDAGAD AV++ FG + TPLD L KV+ + AT +QL +L A RRLLL+VE HA SWLW HA GK +A + PL S LPI+ +R+ R L +FR AKK Sbjct: 170 PLLPTRMSSGN-----TFVPLDGAALNGHLAVARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDTGNALVATVFLGRERALKFLLEQ-KGEGTARTTYASTPRDGRGHTPLLSAVTTGPC--SPRVVRLLVDAGADATLAVRVPDGFGRSTKYTPLDCATRCLAEKVVDEDFATAQQLRNLRASRRLLLQVEVVHATSWLWGG------HAGCPAAPGKKRAQTESTNGKPLKSRLPIMWRRSARRGAALPGVFRLAKK 427
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI) HSP 1 Score: 161 bits (408), Expect = 2.840e-40 Identity = 126/289 (43.60%), Postives = 165/289 (57.09%), Query Frame = 2 Query: 635 MHAIKMLLRAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGISGRPHLH-----CAVDNACLSSSRIMRLLVDAGADTYSAVQITSPFGMPM-RITPLDLTNSYLFTKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAA--AVEGTGKAKACSTPLASVLPILRQRAGRSRVLLAALFRNAKKP 1477 + A + LLRA ANPL+ T +P +P + +PLD+AA G+L V RELIQ +GIEGCGG S G AL A ++ M +LT AGVVDTG AL+++ G SVK+LLQ H + G A+VN +G L C VD S R+ RLLV+AGADT + ++ T+ G+ + TPL LT L K + G ++++L LE IRRLLL+VEA HA SWLW S A E T A + L VLPILR+RA R V+ AL R+ +KP Sbjct: 147 LEATRELLRANANPLI-----TRAP-LP-TLLPLDSAARNGNLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDTGQALTISAGLGREASVKYLLQNHAKHYGPG---AYVNVRDRNGTTPLLSSIYVCGVDEQS-SFPRVARLLVEAGADTTTELRRTNSMGVVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPDNAAEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCRHQRKP 424
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI) HSP 1 Score: 161 bits (408), Expect = 3.610e-40 Identity = 128/283 (45.23%), Postives = 166/283 (58.66%), Query Frame = 2 Query: 650 MLLRAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAG-VVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGIS-GRPHLHCAVDNAC--LSSSRIMRLLVDAGADTYSAVQIT--SPFGMPMRITPLDLTNSYLFTKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWAS-DISSVTHAAAVEGTGKAK-ACSTPLASVLPILRQRAGRSRVLLAALFRNAKK 1474 +LLRA ANPLL S + S+VPL+ AA G+ +VARE+I+++GI GCGG SGGV+AL A + EFM +L AG VVDTG AL +A G AV+VK LL++ + A A+VN GR + CAVD L S +I+RLLVDAGA+T AV +T +P TPL T L + G AT+EQL L+ R LL R EA HAVSWLWAS + + AA T A A +TPL ++ P+LR++ G VLL LFR ++K Sbjct: 163 VLLRAKANPLL-----CSHTPMGVSYVPLEMAALHGNPDVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQADAD-----AYVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVATPLRAMSPMLRRKPGTRGVLLKTLFRYSRK 435
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI) HSP 1 Score: 155 bits (391), Expect = 3.110e-38 Identity = 103/218 (47.25%), Postives = 129/218 (59.17%), Query Frame = 2 Query: 701 SSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGISGRPHLHCAVDNACLSSSRIMRLLVDAGADTYSAVQITSPFG-MPMRITPLDLTNSYLFTKVI-RGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAA 1348 SS G P VPLD AA GH V R L+QELGI+GC + G AL A + + + + +LT AG VDT + ALMC + S KH L+Q + GG A +N SG L ++ + RI+RLL++AGADT S ++ T+ G + TPL LT SYL+ K++ G ATEE L LEAIRRLLLR EA HAVSWLW SD S V HAA Sbjct: 164 SSSGFPG--VPLDVAASSGHSGVVRHLVQELGIKGCNPENAGKQALLLAASKRDLDTLAILTGAGAVDTSGS---ALMCAAEASFKHFLRQRLKEEKGGVEYASINDRISSGLTALVFSIQRCLSQTPRIVRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRRLLLRAEAVHAVSWLWPSDASFVGHAA 376
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D7FVU3_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU3_ECTSI) HSP 1 Score: 152 bits (385), Expect = 3.120e-37 Identity = 119/286 (41.61%), Postives = 153/286 (53.50%), Query Frame = 2 Query: 656 LRAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVD-TGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSL-----------GISGRPHLHCAVDNACLSSSRIMRLLVDAGADTYSAVQITSPFGMP-MRITPLDLTNSYLFTKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAAAVEGTGKAKACSTPLASVLPILRQRAGRSRVLLAALFRNAKK 1474 L A ANPLL +SS +S +SFVPL+ AA+ G V EL++E GI CGG SGG+DAL A Q + M ML AGVVD G AL A+ G +V LL+Q + ++VN G + C + RI R LVDAGADT SAVQ+ + + +TPL+ N + + + AT+EQL LEA RR+LLRV A HAVSW+W SD + A T AK T L +VLP+LR+RAGR +L LFR +KK Sbjct: 138 LHAKANPLLTWSSESSG----RSFVPLEVAAQTGRSAVVSELLREFGIRCCGGPSGGLDALRVAAVYGQVDIMSMLMDAGVVDPVGLALLAAVGSGKEAAVGFLLRQQEERWQ----TSYVNIARDDDGLTALLWSFRGNKNKPC--------NPRITRRLVDAGADTTSAVQLRAKRSRTCVNVTPLEYVNDWALRETNGDHPATDEQLLRLEATRRVLLRVVAVHAVSWIWPSDAPLLARPANSPRT--AKHSPTQLTTVLPVLRRRAGRRALLWDTLFRYSKK 405
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI) HSP 1 Score: 151 bits (382), Expect = 1.510e-36 Identity = 106/244 (43.44%), Postives = 134/244 (54.92%), Query Frame = 2 Query: 749 ERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNSLGISGRPHLHCAVDNACLSSSRIMRLLVDAGADTYSAVQIT-SPFGMPMRITPLDLTNSYLFTKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAA-AVEGTGKAKACSTPLASVLPILRQRAGRSRVLLAALFRNAKK 1474 + GH EV RELIQ+LG+ GCGG S GV++L A Q + MG+LT GVVDTG AL VA SVK LLQ +GG + N+L GR L C ++ SS RI R L+D GADT S V +T S R TPL L + G ATEEQL SL+AI RLL ++EA HAVSWLW S + + HA A K L + +LR G+ V+L A++R A++ Sbjct: 189 QHGHSEVVRELIQQLGVRGCGGVSAGVESLRLAATEQYVDIMGILTVGGVVDTGRALVVAAEYSREESVKFLLQHQ----AGGGTWYVNNTLDPFGRTPLVCTIEACGSSSPRIARFLIDDGADTKSTVLVTRSGEWTTSRDTPLGFATRSLRQNKVGGKNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSSDTPIGHAVGAASSRMKPTTAGPTLKRMSTVLRTTVGKRGVVLRAVYRAAEE 428
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 146 bits (369), Expect = 9.780e-35 Identity = 119/281 (42.35%), Postives = 149/281 (53.02%), Query Frame = 2 Query: 659 RAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIQELGIEGCGGASGGVDALSTAIASQQSEFMGMLTSAGVVDTGAALSVALMCGSAVSVKHLLQQHKRAASGGSSAAHVNS-LGISGRPHLHCAVD----NACLSSSRIMRLLVDAGADTYSAVQIT-SPFGMPMRITPLDLTNSYLFTKVIRGNIATEEQLHSLEAIRRLLLRVEAAHAVSWLWASDISSVTHAAAVEGTGKAKACSTP---LASVLPILRQRAGRSRVLLAALFRNAKK 1474 RA ANPLL + + +PLD AA+ G L V EL+Q GI GCGG +GGV AL A + M LT+AGVVDTG AL A G VK LLQQ S +A+V+ GR L C +D +C S +++RLLVDAGADT S V+ T P +P+ TPL L L K+ +E L LE IRRLLLRVEA HA SWLW + + V A + ++ ST L +VLPILR+RA + A+L R A K Sbjct: 168 RAKANPLL------TRVNLAWQHLPLDTAAQNGRLGVVLELLQRFGIRGCGGGTGGVTALQLAAMKPHMDVMLALTTAGVVDTGIALVKATSFGHMDVVKFLLQQQNGTPS--EKSAYVSRPRDPCGRTPLICNIDVGLNQSC--SPKVVRLLVDAGADTTSIVRFTIQPGTLPVVCTPLSLATEALRIKIAYRKAIPDELLRRLELIRRLLLRVEAVHATSWLWQNGVPRVGLPAGGTAATETESSSTTAPQLRTVLPILRRRARGRGFVSASLCRYAVK 438 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1437.3227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1437.3227.1 >prot_L-elsbetiae_contig1437.3227.1 ID=prot_L-elsbetiae_contig1437.3227.1|Name=mRNA_L-elsbetiae_contig1437.3227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=282bp MHAIKMLLRAGANPLLPFSSATSSPGIPKSFVPLDAAAERGHLEVARELIback to top mRNA from alignment at L-elsbetiae_contig1437:16409..18776+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1437.3227.1 ID=mRNA_L-elsbetiae_contig1437.3227.1|Name=mRNA_L-elsbetiae_contig1437.3227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2368bp|location=Sequence derived from alignment at L-elsbetiae_contig1437:16409..18776+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1437:16409..18776+ >mRNA_L-elsbetiae_contig1437.3227.1 ID=mRNA_L-elsbetiae_contig1437.3227.1|Name=mRNA_L-elsbetiae_contig1437.3227.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1692bp|location=Sequence derived from alignment at L-elsbetiae_contig1437:16409..18776+ (Laminarionema elsbetiae ELsaHSoW15)back to top |