mRNA_L-elsbetiae_contig1437.3225.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1437.3225.1
Unique NamemRNA_L-elsbetiae_contig1437.3225.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1437.3225.1 vs. uniprot
Match: A0A6H5JMH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH8_9PHAE)

HSP 1 Score: 528 bits (1361), Expect = 1.570e-183
Identity = 311/418 (74.40%), Postives = 337/418 (80.62%), Query Frame = 1
Query:  163 VSAFGFGGGLSQQ-SVSRSLRWAGASVRSKVSIPRPGAARIRSRAPSPPSDGETLSATSRRRSAFVVEGR-VGPAAASTTQDWRDLSIEEETALCEQIMENRRVQELQVELERKQSRPVTVHEWAVAAGHPSAHQLMDALQEGRKAQRTMVLCHQGLVRSVALRYNQVSRSLSSDDLTQEGNVGLLQAVEKFDPTRGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDTAMRILAASHALRLESAGGXXXXXXXXTDAQLALALSIPEASVTLYRKSALRQSVADLDNPALSGTPESXXXXXXXXXXXXXXXXERWPWEASRLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGG---EGAAGEAGAALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYADLI 1401
            V AFG+ G LSQQ S SRSLR AG     +  I RP       R PS P+  + L AT+RRR+AFVVEG    P  +S+T DWRDL+ EEETALCE I+ENRR+Q+LQVELERK+SRPVTV EWAVAAGHPSAHQLM ALQEGRKAQRT+ LCHQGLVRSVA RY QVSR+LS DDLTQEGNVGLLQAVEKFDPT+GTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQD AMRILAASHAL+LES G         TDAQLA+AL +PEASV LYRKS L Q++ADLDN ALSG+P+                 E+WPWEAS+LAQA+VVRRDMMRAMQACLSPTEERALRLRFGLGG   EGAAG  G ALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYADLI
Sbjct:   40 VCAFGYVGVLSQQQSSSRSLRPAGGG---RGGIRRP-------RVPSSPAQEKALFATARRRNAFVVEGGGANPVTSSSTADWRDLTKEEETALCELIVENRRIQDLQVELERKESRPVTVQEWAVAAGHPSAHQLMAALQEGRKAQRTLALCHQGLVRSVAYRYKQVSRNLSLDDLTQEGNVGLLQAVEKFDPTKGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDAAMRILAASHALQLESGGDVP------TDAQLAVALGMPEASVALYRKSLLPQNIADLDNSALSGSPQGRAAGGGSRGGRVGG--EQWPWEASQLAQAYVVRRDMMRAMQACLSPTEERALRLRFGLGGAEKEGAAGGGGGALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYADLI 439          
BLAST of mRNA_L-elsbetiae_contig1437.3225.1 vs. uniprot
Match: D7FPW8_ECTSI (RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW8_ECTSI)

HSP 1 Score: 491 bits (1265), Expect = 7.470e-170
Identity = 271/351 (77.21%), Postives = 293/351 (83.48%), Query Frame = 1
Query:  364 GRVGPAAASTTQDWRDLSIEEETALCEQIMENRRVQELQVELERKQSRPVTVHEWAVAAGHPSAHQLMDALQEGRKAQRTMVLCHQGLVRSVALRYNQVSRSLSSDDLTQEGNVGLLQAVEKFDPTRGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDTAMRILAASHALRLESAGGXXXXXXXXTDAQLALALSIPEASVTLYRKSALRQSVADLDNPALSGTPESXXXXXXXXXXXXXXXX--ERWPWEASRLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGG---EGAAGEAGAALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYADLI 1401
            G   P  +S+T DWRDL+ EEETALCE I+ENRR+Q+LQVELERK+SRPVTV EWAVAAGHPSAHQLM ALQEGRKAQRT+ LCHQGLVRSVA RY QVSR+LS DDLTQEGNVGLL+AVEKFD T+GTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQD AMRILAASHAL+LES G         TDAQLA+AL +PEASV LYRKS L Q++ADLDNPAL  +P+                   E+WPWEAS+LAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGG   EGA  + G ALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLL+YADLI
Sbjct:   37 GGANPVTSSSTTDWRDLTKEEETALCELIIENRRIQDLQVELERKESRPVTVQEWAVAAGHPSAHQLMAALQEGRKAQRTLALCHQGLVRSVAYRYKQVSRNLSLDDLTQEGNVGLLEAVEKFDSTKGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDAAMRILAASHALQLESGGDVP------TDAQLAVALGMPEASVALYRKSLLPQNIADLDNPALPSSPQGRGGSGAAGGGSLGGRVGGEQWPWEASQLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGGAEKEGAVADGGGALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLSYADLI 381          
BLAST of mRNA_L-elsbetiae_contig1437.3225.1 vs. uniprot
Match: A0A835ZDU2_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDU2_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.180e-50
Identity = 129/334 (38.62%), Postives = 194/334 (58.08%), Query Frame = 1
Query:  409 DLSIEEETALCEQIMENRRVQELQVELERKQSRPVTVHEWAVAAGHPSAHQLMDALQEGRKAQRTMVLCHQGLVRSVALRYNQVSRSLSSDDLTQEGNVGLLQAVEKFDPTRGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDTAMRILAASHALRLESAGGXXXXXXXXTDAQLALALSIPEASVTLYRKSALRQSV-----ADLDNPALSGTPESXXXXXXXXXXXXXXXXERWPWEASRLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGGEGAAGEAGAALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYAD 1395
            +L  + E AL   I E+ R+   Q +LE    R   V EWA AAG+  +  ++ AL+EG+KAQ  +V   + +VR++A +Y  +++SL+ DDL QEGN+GLL A +KFDP +G RF +YA FR+KASVLRAIA+KDR +R+PVH QD A ++ +A+  L++             TDA++A  L +  + VT +R+   +++V     +D D  A +                           A+  A++ +V  D+ R ++  L+P E  AL+LRFGL G+ AAG     LTFKE+G +M+ SAEGIR++V R++ KL+   EA  LL  YA+
Sbjct:   46 ELDPDVENALYAAIREHSRIHAKQEQLECILGRSALVAEWASAAGYMDSMSMLAALREGQKAQTKLVKSQRAMVRAIAKKYAFITKSLTLDDLIQEGNLGLLSAADKFDPDKGARFGTYAAFRVKASVLRAIANKDRQIRIPVHIQDVAGKVRSATQRLQVT-------LGRPPTDAEIAATLDMLPSEVTAHREMMDKEAVTVNAVSDRDVMAFAA-------------------------RATPQARSEMVE-DLKRVLELYLAPKEIEALQLRFGLDGQ-AAGP----LTFKEVGGSMQTSAEGIRRIVSRALDKLREG-EAWRLLSDYAE 340          
BLAST of mRNA_L-elsbetiae_contig1437.3225.1 vs. uniprot
Match: A0A835ZES3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZES3_9STRA)

HSP 1 Score: 124 bits (311), Expect = 8.870e-28
Identity = 105/311 (33.76%), Postives = 157/311 (50.48%), Query Frame = 1
Query:  469 QELQVELERKQSRPVTVHEWAVAAGHPSAHQLMDALQEGRKAQRTMVLCHQGLVRSVALRYNQVSRSLSSDDLTQEGNVGLLQAVEKFDPTRGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDTAMRILAASHALRLESAGGXXXXXXXXTDAQLALALSIPEASVTLYRKSALRQSVADLD---NPALSGTPESXXXXXXXXXXXXXXXXERWPWEASRLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGGEGAAGEAGAALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYA 1392
            +EL V LER+ SR     EWA   G       +  ++  R A+ TM+  +  L  S+A RY    R L+  DL QEG+ GL++A E+FDP +G +FS+YA + IK S++RAIAD+ R +R+PVH  D    I  A+  L LE            TD +L+L L +P   +  YR++A  +SV  ++   N A  G+  S                E  P    R  Q+ +  ++ M  +   LSP E+  +RLRFGL       + G A T +EIG+   ++ E +R++  R++ KL+     N  L AYA
Sbjct:   94 EELAVRLERQPSRA----EWAAHMGVDEDTLKLIMIRSSR-AKTTMISANLRLAVSIAKRYKH--RGLALSDLVQEGSFGLMKAAERFDPDKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDLLNSIKRATRELSLE-------LGRTPTDEELSLRLQVPTQKIEFYREAA--RSVLSMEQSLNNARKGSAASLGGKSDMTLEDSLRDPE--PLPEDRTQQSML--KENMSQLLGTLSPREQEVVRLRFGL-------DDGRARTLEEIGQVFCVTRERVRQIESRALQKLR-QPYRNHKLRAYA 376          
BLAST of mRNA_L-elsbetiae_contig1437.3225.1 vs. uniprot
Match: A0A835ZBY3_9STRA (RNA polymerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBY3_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.230e-26
Identity = 101/327 (30.89%), Postives = 157/327 (48.01%), Query Frame = 1
Query:  412 LSIEEETALCEQIMENRRVQELQVELERKQSRPVTVHEWAVAAGHPSAHQLMDALQEGRKAQRTMVLCHQGLVRSVALRYNQVSRSLSSDDLTQEGNVGLLQAVEKFDPTRGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDTAMRILAASHALRLESAGGXXXXXXXXTDAQLALALSIPEASVTLYRKSALRQSVADLDNPALSGTPESXXXXXXXXXXXXXXXXERWPWEASRLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGGEGAAGEAGAALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYA 1392
            L  EEE AL  QI      +  + EL  +  R  ++ EWA   G       +  ++  R A+ TM+  +  L  S+A RY +  R L+  DL QEG+ GL++A E+FDP +G +FS+YA + IK S++RAIAD+ R +R+PVH  D    +  A+  L LE            TD +LA+ L +    +  YR +A  QSV  ++      + +                  R P         H + ++ +  +   LSP E+  +RLRFGL       + G A T +EIG+   ++ E +R++  R++ KL+     N  L AYA
Sbjct:   30 LKPEEEIALARQIKLGIEWEAAREELAMRLERTPSLGEWAAHMGVDEDTLKLIMIRSAR-AKSTMISANLRLAVSIAKRYRR--RGLALPDLIQEGSFGLMKAAERFDPEKGFKFSTYATWWIKQSIMRAIADQSRTIRLPVHVHDFLNSVKRATRELSLE-------LGRHPTDEELAMRLQVTAQKIVFYRDAA--QSVLSMEQSRNFASRKGSGASQGGKSDMTLEDSLRDPEPLPEDRTQHAMLKENLLQLLGTLSPREQEVVRLRFGL-------DDGRARTLEEIGQVFCVTRERVRQIESRALQKLR-QPYRNHKLRAYA 336          
BLAST of mRNA_L-elsbetiae_contig1437.3225.1 vs. uniprot
Match: UPI0008F9CA57 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Geitlerinema sp. PCC 9228 TaxID=111611 RepID=UPI0008F9CA57)

HSP 1 Score: 118 bits (295), Expect = 3.710e-26
Identity = 106/330 (32.12%), Postives = 158/330 (47.88%), Query Frame = 1
Query:  412 LSIEEETALCEQIMENRRVQELQVELERKQSRPVTVHEWAVAAGHPSAHQLMDALQEGRKAQRTMVLCHQGLVRSVALRYNQVSRSLSSDDLTQEGNVGLLQAVEKFDPTRGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDTAMRILAASHALRLESAGGXXXXXXXXTDAQLALALSIPEASVTLYRKSA-----LRQSVADLDNPALSGTPESXXXXXXXXXXXXXXXXERWPWEASRLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGGEGAAGEAGAALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLA 1386
            L+ EEE    +Q+ +  ++QE++ EL   Q R  T+ EWA AA   S  QL   L  G  A+R MV  +  LV SVA +Y  + R++   DL QEG +G+ + VEKFDPT+G RFS+YA + I+ ++ RAIA+K R +R+P+H  +   +I  A   L  ++ G         T A+LA  L +    +  Y + A     L Q V D  +  L    E                           A    ++ D+   MQ  L+P ++  L LRFGL       E G ALT  +IG  + +S E +R++   ++ KL+      G  LA
Sbjct:   24 LTHEEEIYYGKQVQKFNQLQEVKKELTESQGREPTMSEWAAAADL-SVEQLQKQLARGEHAKRKMVEANLRLVVSVAKKY--IKRNVDLMDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRNLS-QNLG------RAATVAELAEELDLSPKQIREYLERARQPLSLEQRVGDNQDTELGDLLEDTGP------------------SPEDFATQSSLKADLTELMQD-LTPQQKEVLALRFGL-------EDGKALTLSKIGDRLNISRERVRQIEREALTKLRKRKAQMGEYLA 317          
BLAST of mRNA_L-elsbetiae_contig1437.3225.1 vs. uniprot
Match: A0A5J4Z7E3_PORPP (RNA polymerase sigma factor SigA n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7E3_PORPP)

HSP 1 Score: 119 bits (298), Expect = 2.090e-25
Identity = 105/354 (29.66%), Postives = 170/354 (48.02%), Query Frame = 1
Query:  331 TSRRRSAFVVEG-------RVGPAAASTTQDWRDLSIEE------ETALCEQIMENRRVQELQVELERKQSRPVTVHEWAVAAGHPSAHQLMDALQEGRKAQRTMVLCHQGLVRSVALRYNQVSRSLSSDDLTQEGNVGLLQAVEKFDPTRGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDTAMRILAASHALRLESAGGXXXXXXXXTDAQLALALSIPEASVTLYRKSALRQSVADLDNPALSGTPESXXXXXXXXXXXXXXXXERWPWEASRLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGGEGAAGEAGAALTFKEIGRTMELSAEGIRKMVFRSIAKLQ 1353
            T RRRS     G        VGPAA +  Q    +S ++      E AL  Q+     +Q+++ +  RK  RPV ++EWA   G  +A  L  A+Q G +A+  +V  + GLV +VA +Y     +L+  DL QEG +GL++A EKFD  +G RFS+YA + I+AS++R +  ++R +RVP    D    +      + L             T+ +LA  L +    +    +S +R+  +   N A SG+ +                 E             +++ D+ R ++  L+P E   +RLRFGL       E G   T +E+G+ ++LS E IR++VF ++ KL+
Sbjct:  176 TDRRRSGGGASGGHLRRNSSVGPAATAMRQYLAGISQDDLLERAQEIALANQVRALVDLQKVRSDAARKLGRPVPLNEWAEMVGM-TAQDLTLAMQLGTRAKNQLVTSNMGLVHNVAGKYAGKVETLTFQDLVQEGAMGLMRAAEKFDAKKGWRFSTYATWWIRASMMRCMDHQERSIRVPGPVLDQFRLVKKTFTVMSLRKG-------REPTNEELAKELKLSTDKLRFILQSGVRKPSSVDQNVARSGSNDDAHKTLLDILRSDENVEEN--------IVGEMLKGDLDRVLRRYLNPQERGVVRLRFGL-------EDGHTRTLEEVGKALKLSRERIRQVVFTAMRKLR 506          
BLAST of mRNA_L-elsbetiae_contig1437.3225.1 vs. uniprot
Match: A0A6H5K3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3H4_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.300e-24
Identity = 92/280 (32.86%), Postives = 140/280 (50.00%), Query Frame = 1
Query:  514 TVHEWAVAAGHPSAHQLMDALQEGRKAQRTMVLCHQGLVRSVALRYNQVSRSLSSDDLTQEGNVGLLQAVEKFDPTRGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDTAMRILAASHALRLESAGGXXXXXXXXTDAQLALALSIPEASVTLYRKSALRQSVADLDNPALSGTPESXXXXXXXXXXXXXXXXERWPWEASRLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGGEGAAGEAGAALTFKEIGRTMELSAEGIRKMVFRSIAKLQ 1353
            T  EWAVA G     +L+  L    KA+  M+  +  LV SVA RY    + LS  DL QEG  GL++A EKFDP RG +FS+YA + IK S++R IAD+ R++R+PVH  D   R+  A+  L +    G        TD +LA  L +    +  YR +A  Q+   ++ P    +  S                E+ P    + AQ+ V+++ +   +   LS  E+  ++ RFGLGG           T +E+GR   L+ E +R++  R++ KL+
Sbjct:  228 TEEEWAVALGM-DREELVKELSRASKAKMAMLAANLRLVVSVAKRYR--FQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKAT--LEMTDKNGKLP-----TDEELAEHLEVSAVRIQYYRDAA--QATLSMEAPRTIASKTSTSPGKKVEMGQGVSGPEKTP---DKQAQSDVMKQKVTELLMT-LSIREQEVVKARFGLGGA-------LPRTLEEVGRDFRLTRERVRQIEARALHKLR 484          
BLAST of mRNA_L-elsbetiae_contig1437.3225.1 vs. uniprot
Match: D8LNI6_ECTSI (Chloroplast RNA-polymerase sigma factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI6_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 6.520e-24
Identity = 91/277 (32.85%), Postives = 139/277 (50.18%), Query Frame = 1
Query:  523 EWAVAAGHPSAHQLMDALQEGRKAQRTMVLCHQGLVRSVALRYNQVSRSLSSDDLTQEGNVGLLQAVEKFDPTRGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDTAMRILAASHALRLESAGGXXXXXXXXTDAQLALALSIPEASVTLYRKSALRQSVADLDNPALSGTPESXXXXXXXXXXXXXXXXERWPWEASRLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGGEGAAGEAGAALTFKEIGRTMELSAEGIRKMVFRSIAKLQ 1353
            EWAVA G     +L+  L    KA+  M+  +  LV SVA RY    + LS  DL QEG  GL++A EKFDP RG +FS+YA + IK S++R IAD+ R++R+PVH  D   R+  A+  L +    G        TD +LA  L +    +  YR +A  Q+   ++ P    +  S                E+ P    + AQ+ V+++ +   +   LS  E+  ++ RFGLGG           T +E+GR   L+ E +R++  R++ KL+
Sbjct:  101 EWAVALGM-DREELVKELSRASKAKMAMLAANLRLVVSVAKRYR--FQKLSFQDLIQEGTFGLVKAAEKFDPERGFKFSTYATWWIKQSIMRGIADQSRIIRLPVHVHDFLNRVRKAT--LEMTDKNGKLP-----TDDELAEHLEVSAVRIQYYRDAA--QATLSMEAPRNIASKTSTSPGKKVEMGQGVSGPEKTP---DKQAQSDVMKQKVTELLMT-LSIREQEVVKARFGLGGA-------LPRTLEEVGRDFRLTRERVRQIEARALHKLR 354          
BLAST of mRNA_L-elsbetiae_contig1437.3225.1 vs. uniprot
Match: UPI0019C368EE (Uncharacterized protein n=1 Tax=Okeania sp. KiyG1 TaxID=2720165 RepID=UPI0019C368EE)

HSP 1 Score: 110 bits (276), Expect = 9.890e-24
Identity = 96/323 (29.72%), Postives = 158/323 (48.92%), Query Frame = 1
Query:  421 EEETALCEQIMENRRVQELQVELERKQSRPVTVHEWAVAAGHPSAHQLMDALQEGRKAQRTMVLCHQGLVRSVALRYNQVSRSLSSDDLTQEGNVGLLQAVEKFDPTRGTRFSSYAVFRIKASVLRAIADKDRLVRVPVHAQDTAMRILAASHALRLESAGGXXXXXXXXTDAQLALALSIPEASVTLYRKSALRQSVADLDNPALSGTPESXXXXXXXXXXXXXXXXERWPWEASRLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGGEGAAGEAGAALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAY 1389
            EEE +L  QI E   +++++  LE+K  R     EWA A    S  +L D LQ+GR+A+  MV  +  LV S+A RY   +R L   DL QEG++GL++A EKFD T+G +FS+Y ++ I+ ++ RAI D  R++R+PV+  +T  +I      + +E +          T  ++A  + +    +    + A  Q    LDNP   G  E+                       ++    + ++ D+   +   L+  E   LR+RFGL       + G   T K+IG T  L+ E IR++  +++ KL+   + N +L  Y
Sbjct:    4 EEEISLAHQIDELLALEQIRENLEKKLQRSPNETEWATAV-KMSIPELRDRLQQGRQAKNQMVTANLRLVTSIAKRYQ--NRGLDFQDLIQEGSLGLIRATEKFDHTKGYKFSTYGIWWIRQAITRAICDYSRIIRLPVYLYETISQIKKTVRQMSMERS--------LLTAEEVATRMEMTTEKLRFIVECA--QETLSLDNPIDKG--ENTIYQEAIEFDGETP---------AKYVFENCLQEDVETVLNT-LTERERNVLRMRFGL-------DDGQEKTLKDIGDTFNLTRERIRQIEAKALKKLE-DPKRNRILREY 293          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1437.3225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMH8_9PHAE1.570e-18374.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPW8_ECTSI7.470e-17077.21RpoD n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
A0A835ZDU2_9STRA1.180e-5038.62RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A835ZES3_9STRA8.870e-2833.76RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A835ZBY3_9STRA1.230e-2630.89RNA polymerase n=1 Tax=Tribonema minus TaxID=30337... [more]
UPI0008F9CA573.710e-2632.12RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]
A0A5J4Z7E3_PORPP2.090e-2529.66RNA polymerase sigma factor SigA n=1 Tax=Porphyrid... [more]
A0A6H5K3H4_9PHAE1.300e-2432.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNI6_ECTSI6.520e-2432.85Chloroplast RNA-polymerase sigma factor n=1 Tax=Ec... [more]
UPI0019C368EE9.890e-2429.72Uncharacterized protein n=1 Tax=Okeania sp. KiyG1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1437contigL-elsbetiae_contig1437:6064..8321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score500.4
Seed ortholog evalue9.1e-139
Seed eggNOG ortholog2880.D7FPW8
KEGG koko:K03086
Hectar predicted targeting categoryother localisation
EggNOG free text desc.sigma factor activity
EggNOG OGs2QVXR@2759,COG0568@1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Ec32 ortholog descriptionRNA polymerase sigma-70 region 2
Ec32 orthologEc-01_008400.1
Exons3
Model size1404
Cds size1359
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1437.3225.1prot_L-elsbetiae_contig1437.3225.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1437 6109..8321 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.4630919-UTR-L-elsbetiae_contig1437:6063..61081622815574.4630919-UTR-L-elsbetiae_contig1437:6063..6108Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1437 6064..6108 +
1691682968.158274-UTR-L-elsbetiae_contig1437:6063..61081691682968.158274-UTR-L-elsbetiae_contig1437:6063..6108Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1437 6064..6108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.479836-CDS-L-elsbetiae_contig1437:6108..64861622815574.479836-CDS-L-elsbetiae_contig1437:6108..6486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1437 6109..6486 +
1691682968.1722167-CDS-L-elsbetiae_contig1437:6108..64861691682968.1722167-CDS-L-elsbetiae_contig1437:6108..6486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1437 6109..6486 +
1622815574.4922593-CDS-L-elsbetiae_contig1437:6771..69951622815574.4922593-CDS-L-elsbetiae_contig1437:6771..6995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1437 6772..6995 +
1691682968.1832707-CDS-L-elsbetiae_contig1437:6771..69951691682968.1832707-CDS-L-elsbetiae_contig1437:6771..6995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1437 6772..6995 +
1622815574.5081344-CDS-L-elsbetiae_contig1437:7564..83211622815574.5081344-CDS-L-elsbetiae_contig1437:7564..8321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1437 7565..8321 +
1691682968.1923313-CDS-L-elsbetiae_contig1437:7564..83211691682968.1923313-CDS-L-elsbetiae_contig1437:7564..8321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1437 7565..8321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1437.3225.1

>prot_L-elsbetiae_contig1437.3225.1 ID=prot_L-elsbetiae_contig1437.3225.1|Name=mRNA_L-elsbetiae_contig1437.3225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=453bp
MEQRHRGSCKMATARRRRRCCIVGAAIFSAWGHGRSGSSVSAFGFGGGLS
QQSVSRSLRWAGASVRSKVSIPRPGAARIRSRAPSPPSDGETLSATSRRR
SAFVVEGRVGPAAASTTQDWRDLSIEEETALCEQIMENRRVQELQVELER
KQSRPVTVHEWAVAAGHPSAHQLMDALQEGRKAQRTMVLCHQGLVRSVAL
RYNQVSRSLSSDDLTQEGNVGLLQAVEKFDPTRGTRFSSYAVFRIKASVL
RAIADKDRLVRVPVHAQDTAMRILAASHALRLESAGGGGASAPPPTDAQL
ALALSIPEASVTLYRKSALRQSVADLDNPALSGTPESGAGAAGGRAAGGR
MGGERWPWEASRLAQAHVVRRDMMRAMQACLSPTEERALRLRFGLGGEGA
AGEAGAALTFKEIGRTMELSAEGIRKMVFRSIAKLQASDEANGLLLAYAD
LI*
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mRNA from alignment at L-elsbetiae_contig1437:6064..8321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1437.3225.1 ID=mRNA_L-elsbetiae_contig1437.3225.1|Name=mRNA_L-elsbetiae_contig1437.3225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2258bp|location=Sequence derived from alignment at L-elsbetiae_contig1437:6064..8321+ (Laminarionema elsbetiae ELsaHSoW15)
TCACATCATACCATCATACAATAGCAACCCGTGCGCAGCAACCCGATGGA ACAAAGACATAGAGGAAGCTGTAAAATGGCCACGGCAAGAAGACGGCGGC GGTGCTGCATCGTTGGTGCCGCAATATTTTCTGCGTGGGGGCATGGGCGT AGCGGCAGCTCTGTCTCTGCGTTTGGTTTCGGCGGCGGCCTGTCACAGCA GTCGGTGAGCCGATCGCTGCGTTGGGCTGGGGCTAGCGTTAGAAGCAAGG TGTCGATACCACGTCCAGGAGCAGCGAGAATACGATCGCGAGCACCTTCC CCGCCATCAGATGGAGAAACGCTGTCTGCGACAAGCCGGAGAAGAAGTGC GTTTGTTGTCGAAGGCCGGGTGGGTCCTGCCGCTGCGTCAACGACGCAGG ACTGGAGAGATCTGAGCATCGAGGTGCGGACGGTGTGCGTCCTTTATTGT GTGTTATAGGCGCACTAAGTGTTTCTCCTCTCCCTATCGATCATCGAGGG GGAGGTCTTTTGGTCGTTTCGTCGGTAGTTTAGGGTTGTGGGTATGTATG TACTACATACGTTGCGTTGCACGCCGCTTAGTCACCCCGCAGCTCTCAGA ATATTAGTACCGTCGTAGCATCGATTAAGGCAGACTATGCCGTAGCATCC GACAACTCTGCTTTCAAGTCTCTCTAACTTTGGCACGCACCGGCACCCAC TCCCGCAGGAGGAGACGGCGCTGTGCGAGCAGATAATGGAAAACCGACGA GTGCAGGAGCTGCAGGTCGAGCTCGAGCGCAAGCAATCCCGGCCGGTCAC CGTTCACGAGTGGGCCGTAGCCGCCGGGCACCCGAGCGCTCACCAGCTCA TGGACGCGCTGCAGGAGGGCAGGAAGGCTCAGCGGACGATGGTCCTCTGT CACCAGGGGCTCGTGCGGAGCGTGGCATTGAGGTGAGCATCCATACCGAG CACAACCATCTAGAGACTTATGTACGTCGCTTCTTATTTCGACGACGGGA CCGACATTCAGCGGGCGGTTTTGATCAGTTACTTGAGTTCGCGGTGACAA CACAGGCAGCAAGTGCGGCGCCTATCCCTTGTGGCCAGCACTCGCCCCCT TGTGTAGCTAGCTAGCTCTCACGCTAAAGCAGCTGAGACAGGTGAAGGGA GCGCTTGTCAAGCTGCTGTTTGTACCGCTTTTTGCCGTGTGCTGGTGACG TCATATCCGAATGACGTATATATAGATGTTCCTCGTCGCGATGGTGGAAA CCGAGGGCTGACGATGTCCATTTTTTTGCAGTCAGAAAATCATTCACACC CAACACGCCCTCGCTTTTCAGCACTTTCGCGTTAAAGCATCCGCGTGTGT TTCACCGAAACTAGTACACATGTACATGTAGGCTTCTGGAGCCCCCCCCC CCCCTCCCCTTGTCTCCTTCCTCACCTTCCCTCTCCCGCCTCCCCTGTCT CCGAACTACACCGCTTGCCCACTGGGGTGATCTGGGGGCTCGACGAATCA GGTATAACCAGGTGTCCCGCAGCCTCTCCTCGGACGACCTGACGCAAGAG GGCAACGTCGGCCTCCTCCAGGCGGTCGAAAAGTTCGACCCGACCAGGGG AACCCGCTTCAGCTCGTACGCCGTCTTCCGCATCAAGGCCTCCGTTCTGC GCGCCATCGCCGACAAGGACCGCCTCGTCCGCGTCCCCGTGCACGCGCAG GACACCGCGATGCGCATACTGGCGGCGTCCCACGCGCTCCGGCTCGAGTC CGCGGGCGGCGGCGGAGCGAGCGCCCCGCCGCCCACCGACGCGCAGCTGG CCCTCGCCCTGAGCATACCGGAGGCCAGCGTCACCCTCTACCGGAAGTCG GCGCTGCGGCAGAGCGTCGCGGACCTGGACAACCCCGCGCTGTCCGGCAC CCCGGAGAGCGGCGCGGGCGCCGCCGGCGGCCGGGCCGCGGGCGGGAGGA TGGGCGGGGAGCGGTGGCCGTGGGAGGCGTCTCGGCTCGCCCAGGCGCAC GTGGTCCGTCGAGACATGATGAGGGCGATGCAGGCGTGCCTGTCCCCCAC GGAGGAACGGGCGCTGCGGCTGAGGTTCGGGCTGGGGGGGGAGGGGGCGG CCGGGGAGGCCGGGGCGGCGCTGACCTTCAAGGAGATCGGGAGGACGATG GAGCTCAGCGCGGAGGGGATCCGAAAGATGGTGTTCCGGTCAATCGCGAA GCTGCAGGCGTCCGACGAGGCCAACGGGCTGCTCCTTGCCTACGCGGACC TGATATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1437:6064..8321+

>mRNA_L-elsbetiae_contig1437.3225.1 ID=mRNA_L-elsbetiae_contig1437.3225.1|Name=mRNA_L-elsbetiae_contig1437.3225.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2718bp|location=Sequence derived from alignment at L-elsbetiae_contig1437:6064..8321+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAACAAAGACATAGAGGAAGCTGTAAAATGGCCACGGCAAGAAGACG
GCGGCGGTGCTGCATCGTTGGTGCCGCAATATTTTCTGCGTGGGGGCATG
GGCGTAGCGGCAGCTCTGTCTCTGCGTTTGGTTTCGGCGGCGGCCTGTCA
CAGCAGTCGGTGAGCCGATCGCTGCGTTGGGCTGGGGCTAGCGTTAGAAG
CAAGGTGTCGATACCACGTCCAGGAGCAGCGAGAATACGATCGCGAGCAC
CTTCCCCGCCATCAGATGGAGAAACGCTGTCTGCGACAAGCCGGAGAAGA
AGTGCGTTTGTTGTCGAAGGCCGGGTGGGTCCTGCCGCTGCGTCAACGAC
GCAGGACTGGAGAGATCTGAGCATCGAGATGGAACAAAGACATAGAGGAA
GCTGTAAAATGGCCACGGCAAGAAGACGGCGGCGGTGCTGCATCGTTGGT
GCCGCAATATTTTCTGCGTGGGGGCATGGGCGTAGCGGCAGCTCTGTCTC
TGCGTTTGGTTTCGGCGGCGGCCTGTCACAGCAGTCGGTGAGCCGATCGC
TGCGTTGGGCTGGGGCTAGCGTTAGAAGCAAGGTGTCGATACCACGTCCA
GGAGCAGCGAGAATACGATCGCGAGCACCTTCCCCGCCATCAGATGGAGA
AACGCTGTCTGCGACAAGCCGGAGAAGAAGTGCGTTTGTTGTCGAAGGCC
GGGTGGGTCCTGCCGCTGCGTCAACGACGCAGGACTGGAGAGATCTGAGC
ATCGAGGAGGAGACGGCGCTGTGCGAGCAGATAATGGAAAACCGACGAGT
GCAGGAGCTGCAGGTCGAGCTCGAGCGCAAGCAATCCCGGCCGGTCACCG
TTCACGAGTGGGCCGTAGCCGCCGGGCACCCGAGCGCTCACCAGCTCATG
GACGCGCTGCAGGAGGGCAGGAAGGCTCAGCGGACGATGGTCCTCTGTCA
CCAGGGGCTCGTGCGGAGCGTGGCATTGAGGAGGAGACGGCGCTGTGCGA
GCAGATAATGGAAAACCGACGAGTGCAGGAGCTGCAGGTCGAGCTCGAGC
GCAAGCAATCCCGGCCGGTCACCGTTCACGAGTGGGCCGTAGCCGCCGGG
CACCCGAGCGCTCACCAGCTCATGGACGCGCTGCAGGAGGGCAGGAAGGC
TCAGCGGACGATGGTCCTCTGTCACCAGGGGCTCGTGCGGAGCGTGGCAT
TGAGGTATAACCAGGTGTCCCGCAGCCTCTCCTCGGACGACCTGACGCAA
GAGGGCAACGTCGGCCTCCTCCAGGCGGTCGAAAAGTTCGACCCGACCAG
GGGAACCCGCTTCAGCTCGTACGCCGTCTTCCGCATCAAGGCCTCCGTTC
TGCGCGCCATCGCCGACAAGGACCGCCTCGTCCGCGTCCCCGTGCACGCG
CAGGACACCGCGATGCGCATACTGGCGGCGTCCCACGCGCTCCGGCTCGA
GTCCGCGGGCGGCGGCGGAGCGAGCGCCCCGCCGCCCACCGACGCGCAGC
TGGCCCTCGCCCTGAGCATACCGGAGGCCAGCGTCACCCTCTACCGGAAG
TCGGCGCTGCGGCAGAGCGTCGCGGACCTGGACAACCCCGCGCTGTCCGG
CACCCCGGAGAGCGGCGCGGGCGCCGCCGGCGGCCGGGCCGCGGGCGGGA
GGATGGGCGGGGAGCGGTGGCCGTGGGAGGCGTCTCGGCTCGCCCAGGCG
CACGTGGTCCGTCGAGACATGATGAGGGCGATGCAGGCGTGCCTGTCCCC
CACGGAGGAACGGGCGCTGCGGCTGAGGTTCGGGCTGGGGGGGGAGGGGG
CGGCCGGGGAGGCCGGGGCGGCGCTGACCTTCAAGGAGATCGGGAGGACG
ATGGAGCTCAGCGCGGAGGGGATCCGAAAGATGGTGTTCCGGTCAATCGC
GAAGCTGCAGGCGTCCGACGAGGCCAACGGGCTGCTCCTTGCCTACGCGG
ACCTGATATAAGTATAACCAGGTGTCCCGCAGCCTCTCCTCGGACGACCT
GACGCAAGAGGGCAACGTCGGCCTCCTCCAGGCGGTCGAAAAGTTCGACC
CGACCAGGGGAACCCGCTTCAGCTCGTACGCCGTCTTCCGCATCAAGGCC
TCCGTTCTGCGCGCCATCGCCGACAAGGACCGCCTCGTCCGCGTCCCCGT
GCACGCGCAGGACACCGCGATGCGCATACTGGCGGCGTCCCACGCGCTCC
GGCTCGAGTCCGCGGGCGGCGGCGGAGCGAGCGCCCCGCCGCCCACCGAC
GCGCAGCTGGCCCTCGCCCTGAGCATACCGGAGGCCAGCGTCACCCTCTA
CCGGAAGTCGGCGCTGCGGCAGAGCGTCGCGGACCTGGACAACCCCGCGC
TGTCCGGCACCCCGGAGAGCGGCGCGGGCGCCGCCGGCGGCCGGGCCGCG
GGCGGGAGGATGGGCGGGGAGCGGTGGCCGTGGGAGGCGTCTCGGCTCGC
CCAGGCGCACGTGGTCCGTCGAGACATGATGAGGGCGATGCAGGCGTGCC
TGTCCCCCACGGAGGAACGGGCGCTGCGGCTGAGGTTCGGGCTGGGGGGG
GAGGGGGCGGCCGGGGAGGCCGGGGCGGCGCTGACCTTCAAGGAGATCGG
GAGGACGATGGAGCTCAGCGCGGAGGGGATCCGAAAGATGGTGTTCCGGT
CAATCGCGAAGCTGCAGGCGTCCGACGAGGCCAACGGGCTGCTCCTTGCC
TACGCGGACCTGATATAA
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