mRNA_L-elsbetiae_contig1437.3224.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1437.3224.1
Unique NamemRNA_L-elsbetiae_contig1437.3224.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1437.3224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1437contigL-elsbetiae_contig1437:3008..3558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size551
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1437.3224.1prot_L-elsbetiae_contig1437.3224.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1437 3056..3436 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.3372643-UTR-L-elsbetiae_contig1437:3007..30551622815574.3372643-UTR-L-elsbetiae_contig1437:3007..3055Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1437 3008..3055 +
1691682968.1128402-UTR-L-elsbetiae_contig1437:3007..30551691682968.1128402-UTR-L-elsbetiae_contig1437:3007..3055Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1437 3008..3055 +
1622815574.3644845-UTR-L-elsbetiae_contig1437:3436..35581622815574.3644845-UTR-L-elsbetiae_contig1437:3436..3558Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1437 3437..3558 +
1691682968.1323707-UTR-L-elsbetiae_contig1437:3436..35581691682968.1323707-UTR-L-elsbetiae_contig1437:3436..3558Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1437 3437..3558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.3495295-CDS-L-elsbetiae_contig1437:3055..34361622815574.3495295-CDS-L-elsbetiae_contig1437:3055..3436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1437 3056..3436 +
1691682968.124098-CDS-L-elsbetiae_contig1437:3055..34361691682968.124098-CDS-L-elsbetiae_contig1437:3055..3436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1437 3056..3436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1437.3224.1

>prot_L-elsbetiae_contig1437.3224.1 ID=prot_L-elsbetiae_contig1437.3224.1|Name=mRNA_L-elsbetiae_contig1437.3224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
MLYMQCTLFPCEALQVLQRLAQAAFKISYHESVARSVGESFVVDAQELCL
LFSCTSSALSFKSFSTLPVRGSITEETQETFKPMIQSQRRGQQTQFKSNY
GLPRGDLHLRAIPTRNTSVSGSKTVS*
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mRNA from alignment at L-elsbetiae_contig1437:3008..3558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1437.3224.1 ID=mRNA_L-elsbetiae_contig1437.3224.1|Name=mRNA_L-elsbetiae_contig1437.3224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=551bp|location=Sequence derived from alignment at L-elsbetiae_contig1437:3008..3558+ (Laminarionema elsbetiae ELsaHSoW15)
GACAAGGGTGTGATGGCGAGATACGTGAACTGCTTGCAGATATAGCGCAT
GCTCTACATGCAATGTACCCTGTTCCCGTGCGAAGCACTTCAAGTGCTTC
AACGACTAGCGCAGGCAGCGTTCAAAATAAGTTACCACGAATCTGTAGCG
CGGAGTGTGGGGGAGAGTTTTGTTGTGGACGCTCAGGAGCTCTGTCTTTT
GTTCTCGTGCACGTCCTCGGCCCTCTCATTCAAATCGTTTTCTACCCTAC
CCGTTAGGGGGTCCATCACCGAAGAAACTCAAGAGACGTTCAAACCTATG
ATTCAATCCCAGAGACGAGGGCAGCAGACTCAGTTCAAGTCGAACTATGG
CCTACCGAGAGGCGATTTACATCTGAGAGCAATACCAACACGAAACACGA
GCGTTTCCGGATCAAAAACCGTATCTTGAGTTGTTGGACAGAGTTTTTTC
TGCAACTTATTTCGCCACCCCGCGCCCTGCCCCGCCCTGCCGCACCGCCC
GCGCCGCGCGCGCCCCCTTTCCACAAAAAAAACAAAAAAAAAAACGACGC
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1437:3008..3558+

>mRNA_L-elsbetiae_contig1437.3224.1 ID=mRNA_L-elsbetiae_contig1437.3224.1|Name=mRNA_L-elsbetiae_contig1437.3224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig1437:3008..3558+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCTACATGCAATGTACCCTGTTCCCGTGCGAAGCACTTCAAGTGCT
TCAACGACTAGCGCAGGCAGCGTTCAAAATAAGTTACCACGAATCTGTAG
CGCGGAGTGTGGGGGAGAGTTTTGTTGTGGACGCTCAGGAGCTCTGTCTT
TTGTTCTCGTGCACGTCCTCGGCCCTCTCATTCAAATCGTTTTCTACCCT
ACCCGTTAGGGGGTCCATCACCGAAGAAACTCAAGAGACGTTCAAACCTA
TGATTCAATCCCAGAGACGAGGGCAGCAGACTCAGTTCAAGTCGAACTAT
GGCCTACCGAGAGGCGATTTACATCTGAGAGCAATACCAACACGAAACAC
GAGCGTTTCCGGATCAAAAACCGTATCTTGAATGCTCTACATGCAATGTA
CCCTGTTCCCGTGCGAAGCACTTCAAGTGCTTCAACGACTAGCGCAGGCA
GCGTTCAAAATAAGTTACCACGAATCTGTAGCGCGGAGTGTGGGGGAGAG
TTTTGTTGTGGACGCTCAGGAGCTCTGTCTTTTGTTCTCGTGCACGTCCT
CGGCCCTCTCATTCAAATCGTTTTCTACCCTACCCGTTAGGGGGTCCATC
ACCGAAGAAACTCAAGAGACGTTCAAACCTATGATTCAATCCCAGAGACG
AGGGCAGCAGACTCAGTTCAAGTCGAACTATGGCCTACCGAGAGGCGATT
TACATCTGAGAGCAATACCAACACGAAACACGAGCGTTTCCGGATCAAAA
ACCGTATCTTGA
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