mRNA_L-elsbetiae_contig14360.3222.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14360.3222.1
Unique NamemRNA_L-elsbetiae_contig14360.3222.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14360.3222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14360contigL-elsbetiae_contig14360:3156..3565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size410
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.2341788-CDS-L-elsbetiae_contig14360:3155..34911622815574.2341788-CDS-L-elsbetiae_contig14360:3155..3491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14360 3156..3491 +
1691682968.0752854-CDS-L-elsbetiae_contig14360:3155..34911691682968.0752854-CDS-L-elsbetiae_contig14360:3155..3491Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14360 3156..3491 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.251576-UTR-L-elsbetiae_contig14360:3491..35651622815574.251576-UTR-L-elsbetiae_contig14360:3491..3565Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14360 3492..3565 +
1691682968.0842066-UTR-L-elsbetiae_contig14360:3491..35651691682968.0842066-UTR-L-elsbetiae_contig14360:3491..3565Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14360 3492..3565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14360.3222.1prot_L-elsbetiae_contig14360.3222.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14360 3156..3491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14360.3222.1

>prot_L-elsbetiae_contig14360.3222.1 ID=prot_L-elsbetiae_contig14360.3222.1|Name=mRNA_L-elsbetiae_contig14360.3222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
WSLGLRLCQLPCVFHKSLCFVCENYPPGPSRCSKTRPNEYSPVGRWSRCK
VIDPQQFAFLSKLPPAASLVAFESERPSFCSPKVQNCPPGGYGQAFTIRL
TERLMFTDPSN*
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mRNA from alignment at L-elsbetiae_contig14360:3156..3565+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14360.3222.1 ID=mRNA_L-elsbetiae_contig14360.3222.1|Name=mRNA_L-elsbetiae_contig14360.3222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=410bp|location=Sequence derived from alignment at L-elsbetiae_contig14360:3156..3565+ (Laminarionema elsbetiae ELsaHSoW15)
TGGTCCTTGGGGCTCCGTTTGTGTCAGCTACCTTGCGTTTTTCACAAGTC
ACTTTGTTTTGTATGTGAAAATTACCCCCCGGGCCCTTCAAGGTGCTCTA
AAACGCGGCCAAACGAGTATTCTCCAGTCGGTCGCTGGTCCCGATGCAAA
GTGATTGATCCGCAACAGTTTGCATTTCTCTCCAAATTGCCACCTGCCGC
TTCTCTTGTAGCTTTTGAATCGGAAAGACCGAGCTTTTGTTCTCCGAAGG
TGCAAAATTGCCCCCCTGGAGGATACGGCCAGGCATTCACCATACGCCTG
ACCGAGCGTTTGATGTTCACGGATCCATCAAACTAACCACACACAAGCAA
GAACAGCGTAAGCCGCGTGGAGGGTCTACTGATATGGTGTGTGGGAATCG
CTGGGTGTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14360:3156..3565+

>mRNA_L-elsbetiae_contig14360.3222.1 ID=mRNA_L-elsbetiae_contig14360.3222.1|Name=mRNA_L-elsbetiae_contig14360.3222.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig14360:3156..3565+ (Laminarionema elsbetiae ELsaHSoW15)
TGGTCCTTGGGGCTCCGTTTGTGTCAGCTACCTTGCGTTTTTCACAAGTC
ACTTTGTTTTGTATGTGAAAATTACCCCCCGGGCCCTTCAAGGTGCTCTA
AAACGCGGCCAAACGAGTATTCTCCAGTCGGTCGCTGGTCCCGATGCAAA
GTGATTGATCCGCAACAGTTTGCATTTCTCTCCAAATTGCCACCTGCCGC
TTCTCTTGTAGCTTTTGAATCGGAAAGACCGAGCTTTTGTTCTCCGAAGG
TGCAAAATTGCCCCCCTGGAGGATACGGCCAGGCATTCACCATACGCCTG
ACCGAGCGTTTGATGTTCACGGATCCATCAAACTAATGGTCCTTGGGGCT
CCGTTTGTGTCAGCTACCTTGCGTTTTTCACAAGTCACTTTGTTTTGTAT
GTGAAAATTACCCCCCGGGCCCTTCAAGGTGCTCTAAAACGCGGCCAAAC
GAGTATTCTCCAGTCGGTCGCTGGTCCCGATGCAAAGTGATTGATCCGCA
ACAGTTTGCATTTCTCTCCAAATTGCCACCTGCCGCTTCTCTTGTAGCTT
TTGAATCGGAAAGACCGAGCTTTTGTTCTCCGAAGGTGCAAAATTGCCCC
CCTGGAGGATACGGCCAGGCATTCACCATACGCCTGACCGAGCGTTTGAT
GTTCACGGATCCATCAAACTAA
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