mRNA_L-elsbetiae_contig14337.3204.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14337.3204.1
Unique NamemRNA_L-elsbetiae_contig14337.3204.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14337.3204.1 vs. uniprot
Match: D8LRK5_ECTSI (Yae1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK5_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 7.160e-24
Identity = 130/228 (57.02%), Postives = 143/228 (62.72%), Query Frame = 1 
Query:    1 MEEKKQDCFGSDGVDEFFGADVEQEEAQPNTMAESRELAAIRERLTTLGYQDGVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA----RAALVASHERPAEAGVAGAAHLGPAENNSTLEDGTSASCVEPRAGGGESESXXXXXXXXXXXXXXXXXXXXRLRESGAKDTAVMGAADGLQELVEELRNGILLGADGPGAPDRAEVLRRVRLAGPAGEAVADGL 672
            MEEK+ + FG DGVDEFFG DVE+E  Q   MA+ RELAA++ RLTTLGYQDGVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      + A         +AG  G   L  A  +ST     SA+   P    G SE   XXXXXXXXXX               K +   G A+ LQ LV ELR   LLG DGPG PDRAEVLRR+R    AG AVADGL
Sbjct:    1 MEEKRPEIFGVDGVDEFFGDDVEEEREQSRDMAD-RELAALQARLTTLGYQDGVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKQAARGGQSTEKDAGTVGGLRLETAAGSSTSGAALSAA---PLGSTGASEIAGXXXXXXXXXXAVSQPVEGY---RNTKTSPAAGTAEDLQRLVGELRRASLLGPDGPGVPDRAEVLRRLRXXXXAGVAVADGL 221
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BLAST of mRNA_L-elsbetiae_contig14337.3204.1 vs. uniprot
Match: A0A6H5JF48_9PHAE (Yae1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF48_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 6.970e-10
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:  505 KDTAVMGAADGLQELVEELRNGILLGADGPGAPDRAEVLRRVRLAGPAGEAVADGL 672
            K    +G A+ LQ LV ELR   LLG DGPG PDRAEVLRR+RL   AG AVADGL
Sbjct:  108 KTFPAVGTAEDLQRLVGELRRASLLGPDGPGVPDRAEVLRRLRLXXXAGVAVADGL 163
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14337.3204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRK5_ECTSI7.160e-2457.02Yae1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JF48_9PHAE6.970e-1064.29Yae1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14337contigL-elsbetiae_contig14337:1491..2707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEssential protein Yae1, N-terminal
Ec32 orthologEc-12_000140.1
Exons2
Model size681
Cds size681
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.8488047-CDS-L-elsbetiae_contig14337:1490..20671622815572.8488047-CDS-L-elsbetiae_contig14337:1490..2067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14337 1491..2067 -
1691682967.32451-CDS-L-elsbetiae_contig14337:1490..20671691682967.32451-CDS-L-elsbetiae_contig14337:1490..2067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14337 1491..2067 -
1622815572.8627021-CDS-L-elsbetiae_contig14337:2603..27071622815572.8627021-CDS-L-elsbetiae_contig14337:2603..2707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14337 2604..2707 -
1691682967.3344445-CDS-L-elsbetiae_contig14337:2603..27071691682967.3344445-CDS-L-elsbetiae_contig14337:2603..2707Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14337 2604..2707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14337.3204.1prot_L-elsbetiae_contig14337.3204.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14337 1491..2707 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14337.3204.1

>prot_L-elsbetiae_contig14337.3204.1 ID=prot_L-elsbetiae_contig14337.3204.1|Name=mRNA_L-elsbetiae_contig14337.3204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=227bp
MEEKKQDCFGSDGVDEFFGADVEQEEAQPNTMAESRELAAIRERLTTLGY
QDGVDDGVQEAVQGGFDQGYAVGAAAGWEAGSLYGAAAAARAALVASHER
PAEAGVAGAAHLGPAENNSTLEDGTSASCVEPRAGGGESESIAAAALSAA
ESTTAVSSQRRRLRESGAKDTAVMGAADGLQELVEELRNGILLGADGPGA
PDRAEVLRRVRLAGPAGEAVADGLAD*
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mRNA from alignment at L-elsbetiae_contig14337:1491..2707-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14337.3204.1 ID=mRNA_L-elsbetiae_contig14337.3204.1|Name=mRNA_L-elsbetiae_contig14337.3204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1217bp|location=Sequence derived from alignment at L-elsbetiae_contig14337:1491..2707- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGAGAAGAAACAGGATTGCTTTGGGAGCGATGGGGTGGACGAGTT
CTTCGGCGCTGATGTGGAACAGGAAGAAGCGCAACCCAACACCATGGCCG
AGAGGTGTGTCCTACAATATGCGAATTTGCAACTTTTAAAGTTGCACATT
GCACCGCTGCCTCATCCCTCTCGATACACATATAGAGTAGTGTAGATATT
GGCCACGCCCTCTCCCGATACCATGCCTTGGGCGCACGCACATATATGTG
AGCGATTGTGAAGCTGTGATCACTGCATCAGAGTCGGCAAATCGTAGGAA
CTTTTCCACTGCTGGTTCGAGCACGGAACTCTGCTGTGCTTGTGTACATA
GCATCTGACATGTGACACGTGGGTGTCTCGGTGACCTGTAAAGCTCCAGG
CAACTTCGTGGGTGTGTAGACTATACAACAGTGTGTGGAGCAGACAATGC
TAGAATGGGCGGAGAGGAATCCCCCGAGCGGTCCTCGTTGCCAACGACCT
ACGCATGTCCTTGTCCTTTTCACTCTCGCCCACGGTCCAGCGGTCGTACT
TGAACTCCAAAAACCCAATCGCCCAGAAGACCTACACCTGCTGTATGTGT
TTCATGTACCTTTTTTTTACAAACATACGCACGGAACAAGCAGAGAGCTA
GCAGCCATCCGAGAACGTCTCACTACCCTGGGCTATCAGGACGGCGTGGA
TGATGGTGTGCAAGAGGCTGTTCAGGGAGGCTTCGACCAGGGCTATGCGG
TTGGGGCGGCGGCCGGATGGGAGGCCGGCTCGCTTTACGGCGCCGCAGCC
GCCGCGAGAGCGGCTCTTGTGGCCAGTCACGAGCGACCGGCGGAGGCGGG
GGTGGCAGGAGCTGCACACCTCGGTCCGGCGGAAAACAATAGTACGTTAG
AAGATGGAACTAGTGCGTCGTGTGTAGAGCCGCGGGCGGGTGGTGGTGAA
AGCGAGAGCATTGCGGCGGCAGCCTTATCGGCGGCGGAATCAACTACTGC
CGTTTCATCTCAAAGAAGACGGTTAAGAGAAAGTGGCGCAAAGGATACAG
CTGTGATGGGAGCGGCGGACGGTTTGCAAGAGTTGGTTGAAGAGCTCAGG
AACGGCATTCTGCTGGGGGCAGATGGTCCGGGCGCGCCCGACAGGGCCGA
GGTACTGCGTAGGGTTAGACTAGCGGGCCCGGCCGGAGAAGCGGTTGCCG
ATGGCCTTGCCGATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14337:1491..2707-

>mRNA_L-elsbetiae_contig14337.3204.1 ID=mRNA_L-elsbetiae_contig14337.3204.1|Name=mRNA_L-elsbetiae_contig14337.3204.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1362bp|location=Sequence derived from alignment at L-elsbetiae_contig14337:1491..2707- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGAGAAGAAACAGGATTGCTTTGGGAGCGATGGGGTGGACGAGTT
CTTCGGCGCTGATGTGGAACAGGAAGAAGCGCAACCCAACACCATGGCCG
AGAGATGGAGGAGAAGAAACAGGATTGCTTTGGGAGCGATGGGGTGGACG
AGTTCTTCGGCGCTGATGTGGAACAGGAAGAAGCGCAACCCAACACCATG
GCCGAGAGCAGAGAGCTAGCAGCCATCCGAGAACGTCTCACTACCCTGGG
CTATCAGGACGGCGTGGATGATGGTGTGCAAGAGGCTGTTCAGGGAGGCT
TCGACCAGGGCTATGCGGTTGGGGCGGCGGCCGGATGGGAGGCCGGCTCG
CTTTACGGCGCCGCAGCCGCCGCGAGAGCGGCTCTTGTGGCCAGTCACGA
GCGACCGGCGGAGGCGGGGGTGGCAGGAGCTGCACACCTCGGTCCGGCGG
AAAACAATAGTACGTTAGAAGATGGAACTAGTGCGTCGTGTGTAGAGCCG
CGGGCGGGTGGTGGTGAAAGCGAGAGCATTGCGGCGGCAGCCTTATCGGC
GGCGGAATCAACTACTGCCGTTTCATCTCAAAGAAGACGGTTAAGAGAAA
GTGGCGCAAAGGATACAGCTGTGATGGGAGCGGCGGACGGTTTGCAAGAG
TTGGTTGAAGAGCTCAGGAACGGCATTCTGCTGGGGGCAGATGGTCCGGG
CGCGCCCGACAGGGCCGAGGTACTGCGTAGGGTTAGACTAGCGGGCCCGG
CCGGAGAAGCGGTTGCCGATGGCCTTGCCGATTGACAGAGAGCTAGCAGC
CATCCGAGAACGTCTCACTACCCTGGGCTATCAGGACGGCGTGGATGATG
GTGTGCAAGAGGCTGTTCAGGGAGGCTTCGACCAGGGCTATGCGGTTGGG
GCGGCGGCCGGATGGGAGGCCGGCTCGCTTTACGGCGCCGCAGCCGCCGC
GAGAGCGGCTCTTGTGGCCAGTCACGAGCGACCGGCGGAGGCGGGGGTGG
CAGGAGCTGCACACCTCGGTCCGGCGGAAAACAATAGTACGTTAGAAGAT
GGAACTAGTGCGTCGTGTGTAGAGCCGCGGGCGGGTGGTGGTGAAAGCGA
GAGCATTGCGGCGGCAGCCTTATCGGCGGCGGAATCAACTACTGCCGTTT
CATCTCAAAGAAGACGGTTAAGAGAAAGTGGCGCAAAGGATACAGCTGTG
ATGGGAGCGGCGGACGGTTTGCAAGAGTTGGTTGAAGAGCTCAGGAACGG
CATTCTGCTGGGGGCAGATGGTCCGGGCGCGCCCGACAGGGCCGAGGTAC
TGCGTAGGGTTAGACTAGCGGGCCCGGCCGGAGAAGCGGTTGCCGATGGC
CTTGCCGATTGA
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