mRNA_L-elsbetiae_contig14332.3202.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig14332.3202.1 vs. uniprot
Match: A0A6H5L7H3_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7H3_9PHAE) HSP 1 Score: 278 bits (711), Expect = 3.520e-86 Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 1 Query: 1 VSELDVLVSFAEVAALAPTELVRPTMRDVGTGVLKVKGCRHPCLEWQDEMEFIPNDYDMSSADASFVVVTGPNMGGKSTYIRALGAVTVMAQVGSFVPCESAEISVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRG 465 VSELD+LVSFA+VAALAPTELVRPTM+D GTGVLKV GCRHPCLEWQDEM FIPNDYDMSS ASFVVVTGPNMGGKSTYIR LGAVTVMAQVGSFVPCE+AE+SVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAAS+DSLIIIDELGRG Sbjct: 503 VSELDILVSFADVAALAPTELVRPTMKDKGTGVLKVIGCRHPCLEWQDEMNFIPNDYDMSSDGASFVVVTGPNMGGKSTYIRTLGAVTVMAQVGSFVPCETAEMSVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASKDSLIIIDELGRG 657
BLAST of mRNA_L-elsbetiae_contig14332.3202.1 vs. uniprot
Match: A0A7S2V0D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0D9_9STRA) HSP 1 Score: 209 bits (531), Expect = 5.930e-65 Identity = 110/156 (70.51%), Postives = 124/156 (79.49%), Query Frame = 1 Query: 1 VSELDVLVSFAEVAALAPTELVRPTMRDVGTGVLKVKGCRHPCLEWQDEME-FIPNDYDMSSADASFVVVTGPNMGGKSTYIRALGAVTVMAQVGSFVPCESAEISVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRG 465 V+ELDVLVSFA AALAP E RP MR G+G L V RHPC+E QD +E FIPNDY + + F V+TGPNMGGKSTYIRALGA+ +MAQVGSFVPC SAE+SV D V ARVGAGD QQRG+STFMAEMLEASAI+ A+ DSL+IIDELGRG Sbjct: 6 VAELDVLVSFAHTAALAPGEYCRPVMRKRGSGCLIVHQARHPCVEMQDSVERFIPNDYILKKDSSWFNVITGPNMGGKSTYIRALGAIVIMAQVGSFVPCSSAELSVMDCVLARVGAGDRQQRGLSTFMAEMLEASAILQTATSDSLVIIDELGRG 161
BLAST of mRNA_L-elsbetiae_contig14332.3202.1 vs. uniprot
Match: A0A835YUY7_9STRA (Muts protein-like protein 2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUY7_9STRA) HSP 1 Score: 218 bits (554), Expect = 8.730e-64 Identity = 110/155 (70.97%), Postives = 128/155 (82.58%), Query Frame = 1 Query: 1 VSELDVLVSFAEVAALAPTELVRPTMRDVGTGVLKVKGCRHPCLEWQDEMEFIPNDYDMSSADASFVVVTGPNMGGKSTYIRALGAVTVMAQVGSFVPCESAEISVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRG 465 V+ELDVLV+ A AA+AP + VRP + D G+GVL V+G RHPCLEWQ++M F+PN Y M F+VVTGPNMGGKSTYIR LG++ VMAQ+GSFVP SAEIS+ DA+FARVGAGDAQQRGVSTFMAEMLEASAI+ AA+ SLIIIDELGRG Sbjct: 444 VAELDVLVALAHTAAMAPEQYVRPKLLDAGSGVLDVQGARHPCLEWQEDMSFMPNSYAMKRDKGRFLVVTGPNMGGKSTYIRTLGSIVVMAQMGSFVPAASAEISIVDALFARVGAGDAQQRGVSTFMAEMLEASAILDAATDKSLIIIDELGRG 598
BLAST of mRNA_L-elsbetiae_contig14332.3202.1 vs. uniprot
Match: A0A7S3GQQ0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GQQ0_9STRA) HSP 1 Score: 198 bits (503), Expect = 5.960e-60 Identity = 100/156 (64.10%), Postives = 123/156 (78.85%), Query Frame = 1 Query: 1 VSELDVLVSFAEVAALAPTELVRPTMRDVGTGVLKVKGCRHPCLEWQDEM-EFIPNDYDMSSADASFVVVTGPNMGGKSTYIRALGAVTVMAQVGSFVPCESAEISVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRG 465 +SELDVL+SFA AALAP VRPT+ G G+ +KG RHPC+E D +FI NDYD+ +SF ++TGPNMGGKSTYIRA+G +TV+AQVG FVPC+SA +SV D + ARVGAGDA Q+GVSTFMAEMLE++ ++ A+RDSLIIIDELGRG Sbjct: 31 ISELDVLLSFATAAALAPGVYVRPTVLKQGEGICDLKGARHPCVELMDSTSQFIANDYDLIRDKSSFQIITGPNMGGKSTYIRAVGCITVLAQVGCFVPCDSATLSVTDCILARVGAGDAVQKGVSTFMAEMLESAVMLQTATRDSLIIIDELGRG 186
BLAST of mRNA_L-elsbetiae_contig14332.3202.1 vs. uniprot
Match: E1ZJU0_CHLVA (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJU0_CHLVA) HSP 1 Score: 194 bits (494), Expect = 2.120e-58 Identity = 96/154 (62.34%), Postives = 120/154 (77.92%), Query Frame = 1 Query: 4 SELDVLVSFAEVAALAPTELVRPTMRDVGTGVLKVKGCRHPCLEWQDEMEFIPNDYDMSSADASFVVVTGPNMGGKSTYIRALGAVTVMAQVGSFVPCESAEISVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRG 465 +ELD+L +F EVAA AP VRPTM G + ++GCRHPCLE Q+ ++FIPND M + + F ++TGPNMGGKST+IR +G +MAQ+GSFVP +SA ISVRDA+FARVGAGD QQRG+STFMAEMLE +AI+ A+ SL+IIDELGRG Sbjct: 52 AELDLLAAFGEVAAAAPASYVRPTMLPSEEGEISLRGCRHPCLEVQEGVDFIPNDCLMRTGQSWFHIITGPNMGGKSTFIRQVGLAVLMAQIGSFVPADSARISVRDAIFARVGAGDCQQRGLSTFMAEMLETAAILKGATSSSLVIIDELGRG 205
BLAST of mRNA_L-elsbetiae_contig14332.3202.1 vs. uniprot
Match: A0A7J6APU9_AMEME (DNA mismatch repair protein Msh2 n=1 Tax=Ameiurus melas TaxID=219545 RepID=A0A7J6APU9_AMEME) HSP 1 Score: 187 bits (474), Expect = 1.640e-56 Identity = 92/155 (59.35%), Postives = 120/155 (77.42%), Query Frame = 1 Query: 1 VSELDVLVSFAEVAALAPTELVRPTMRDVGTGVLKVKGCRHPCLEWQDEMEFIPNDYDMSSADASFVVVTGPNMGGKSTYIRALGAVTVMAQVGSFVPCESAEISVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRG 465 +++LD +VSF+ V+ AP VRP + + GTG L +KG RHPC+E QD++ FIPND + F ++TGPNMGGKSTYIR +G + +MAQVG FVPC+ AE+SV D+V ARVGAGD+Q +GVSTFMAEMLE +AI+ +A+ +SLIIIDELGRG Sbjct: 56 IAQLDAVVSFSVVSHAAPVPYVRPRILEKGTGRLVLKGARHPCVEAQDDVAFIPNDVTFTKGKEMFHIITGPNMGGKSTYIRQVGVIVLMAQVGCFVPCDEAEVSVVDSVLARVGAGDSQIKGVSTFMAEMLETAAILRSATENSLIIIDELGRG 210
BLAST of mRNA_L-elsbetiae_contig14332.3202.1 vs. uniprot
Match: C0IMY3_VERVE (Mismatch repair MutS-like protein (Fragment) n=1 Tax=Vermamoeba vermiformis TaxID=5778 RepID=C0IMY3_VERVE) HSP 1 Score: 194 bits (494), Expect = 1.190e-55 Identity = 96/155 (61.94%), Postives = 123/155 (79.35%), Query Frame = 1 Query: 1 VSELDVLVSFAEVAALAPTELVRPTMRDVGTGVLKVKGCRHPCLEWQDEMEFIPNDYDMSSADASFVVVTGPNMGGKSTYIRALGAVTVMAQVGSFVPCESAEISVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRG 465 ++ELDV SFA+VA AP +RP M+++GTG + +K RHP LE Q +M FIPND D+ ++SF ++TGPNMGGKST+IR +G + +MAQ+GSFVPC+SAEIS+ DA+ ARVGAGD+Q RGVSTFMAEMLE S I+ A+ +SLIIIDELGRG Sbjct: 497 IAELDVYTSFADVAYTAPYSYIRPDMKELGTGNVVLKKARHPVLEIQPDMTFIPNDTDLVRGESSFQIITGPNMGGKSTFIRQVGVIVLMAQIGSFVPCDSAEISICDAILARVGAGDSQLRGVSTFMAEMLETSTILHTATPNSLIIIDELGRG 651
BLAST of mRNA_L-elsbetiae_contig14332.3202.1 vs. uniprot
Match: T1IP55_STRMM (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IP55_STRMM) HSP 1 Score: 196 bits (498), Expect = 2.790e-55 Identity = 97/155 (62.58%), Postives = 122/155 (78.71%), Query Frame = 1 Query: 1 VSELDVLVSFAEVAALAPTELVRPTMRDVGTGVLKVKGCRHPCLEWQDEMEFIPNDYDMSSADASFVVVTGPNMGGKSTYIRALGAVTVMAQVGSFVPCESAEISVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRG 465 +S LDVL+SFA VA APT VRP + G+G+LK+ RHPCLE QD+++FIPND +F ++TGPNMGGKSTYIR++G V+AQ+GSF+PCESAEIS+ D++ ARVGAGD+Q +GVSTFM EMLE +AI+ AA+ DSLIIIDELGRG Sbjct: 593 ISRLDVLLSFAFVAEKAPTSYVRPKLFSKGSGILKLTQARHPCLEVQDDVKFIPNDVYFEKDKTTFHIITGPNMGGKSTYIRSIGVNVVLAQIGSFIPCESAEISIVDSILARVGAGDSQMKGVSTFMVEMLETAAILRAATSDSLIIIDELGRG 747
BLAST of mRNA_L-elsbetiae_contig14332.3202.1 vs. uniprot
Match: UPI000511AF90 (DNA mismatch repair protein Msh2-like n=1 Tax=Pelecanus crispus TaxID=36300 RepID=UPI000511AF90) HSP 1 Score: 184 bits (468), Expect = 5.430e-55 Identity = 90/155 (58.06%), Postives = 116/155 (74.84%), Query Frame = 1 Query: 1 VSELDVLVSFAEVAALAPTELVRPTMRDVGTGVLKVKGCRHPCLEWQDEMEFIPNDYDMSSADASFVVVTGPNMGGKSTYIRALGAVTVMAQVGSFVPCESAEISVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRG 465 +++LD +VSFA V+ AP VRP + + G G + +KG RHPC+E QDE+ FIPND F ++TGPNMGGKSTYIR G + +MAQ+G FVPC+SAEI++ D + ARVGAGD+Q +GVSTFMAEMLE ++I+ AS +SLIIIDELGRG Sbjct: 95 IAQLDAIVSFAHVSNGAPVPYVRPVILEKGQGRIVLKGARHPCIEVQDEVAFIPNDITFEKGKQMFHIITGPNMGGKSTYIRQTGLIVLMAQIGCFVPCDSAEITIVDCILARVGAGDSQLKGVSTFMAEMLETASILRTASENSLIIIDELGRG 249
BLAST of mRNA_L-elsbetiae_contig14332.3202.1 vs. uniprot
Match: F7FIJ9_ORNAN (DNA mismatch repair protein n=2 Tax=Monotremata TaxID=9255 RepID=F7FIJ9_ORNAN) HSP 1 Score: 194 bits (494), Expect = 1.110e-54 Identity = 97/154 (62.99%), Postives = 119/154 (77.27%), Query Frame = 1 Query: 4 SELDVLVSFAEVAALAPTELVRPTMRDVGTGVLKVKGCRHPCLEWQDEMEFIPNDYDMSSADASFVVVTGPNMGGKSTYIRALGAVTVMAQVGSFVPCESAEISVRDAVFARVGAGDAQQRGVSTFMAEMLEASAIISAASRDSLIIIDELGRG 465 ++LD +VSFA VA AP VRPT+ D G G L ++GCRH C+E QDE+ FIPND +F +VTGPNMGGKSTYIR G V +MAQ+G FVPCE+AE+S+ D + ARVGAGD+Q +GVSTFMAEMLE ++I+ +ASRDSLIIIDELGRG Sbjct: 600 AQLDAMVSFAHVATSAPVPYVRPTILDKGHGRLALRGCRHACVEVQDEVAFIPNDVVFERGRQTFHIVTGPNMGGKSTYIRQTGVVVLMAQIGCFVPCEAAEVSIVDRILARVGAGDSQLKGVSTFMAEMLETASILRSASRDSLIIIDELGRG 753 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14332.3202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig14332.3202.1 >prot_L-elsbetiae_contig14332.3202.1 ID=prot_L-elsbetiae_contig14332.3202.1|Name=mRNA_L-elsbetiae_contig14332.3202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=164bp VSELDVLVSFAEVAALAPTELVRPTMRDVGTGVLKVKGCRHPCLEWQDEMback to top mRNA from alignment at L-elsbetiae_contig14332:471..2405- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig14332.3202.1 ID=mRNA_L-elsbetiae_contig14332.3202.1|Name=mRNA_L-elsbetiae_contig14332.3202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1935bp|location=Sequence derived from alignment at L-elsbetiae_contig14332:471..2405- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig14332:471..2405- >mRNA_L-elsbetiae_contig14332.3202.1 ID=mRNA_L-elsbetiae_contig14332.3202.1|Name=mRNA_L-elsbetiae_contig14332.3202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=984bp|location=Sequence derived from alignment at L-elsbetiae_contig14332:471..2405- (Laminarionema elsbetiae ELsaHSoW15)back to top |