mRNA_L-elsbetiae_contig14323.3197.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14323.3197.1
Unique NamemRNA_L-elsbetiae_contig14323.3197.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14323.3197.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.310e-8
Identity = 29/33 (87.88%), Postives = 32/33 (96.97%), Query Frame = 1 
Query:  229 VGSHIDAMGLTAAFRGVDPSGVARFDASSMVAW 327
            VG HIDAMGLTAAF+G+DPSGVA+FDASSMVAW
Sbjct:   13 VGCHIDAMGLTAAFKGMDPSGVAQFDASSMVAW 45
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14323.3197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPS0_ECTSI2.310e-887.88Hypothetical leucine rich repeat calmodulin bindin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14323contigL-elsbetiae_contig14323:2843..3480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog2880.D8LPS0
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG1947@1,KOG1947@2759,KOG4341@1,KOG4341@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Ec32 ortholog descriptionHypothetical leucine rich repeat calmodulin binding protein
Ec32 orthologEc-18_002240.1
Exons2
Model size327
Cds size327
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815572.2311716-CDS-L-elsbetiae_contig14323:2842..29411622815572.2311716-CDS-L-elsbetiae_contig14323:2842..2941Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14323 2843..2941 -
1691682966.9362788-CDS-L-elsbetiae_contig14323:2842..29411691682966.9362788-CDS-L-elsbetiae_contig14323:2842..2941Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14323 2843..2941 -
1622815572.2446933-CDS-L-elsbetiae_contig14323:3252..34801622815572.2446933-CDS-L-elsbetiae_contig14323:3252..3480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14323 3253..3480 -
1691682966.9476914-CDS-L-elsbetiae_contig14323:3252..34801691682966.9476914-CDS-L-elsbetiae_contig14323:3252..3480Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14323 3253..3480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14323.3197.1prot_L-elsbetiae_contig14323.3197.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14323 2843..3480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14323.3197.1

>prot_L-elsbetiae_contig14323.3197.1 ID=prot_L-elsbetiae_contig14323.3197.1|Name=mRNA_L-elsbetiae_contig14323.3197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MTRVAESVKSAIKAYEQTTSLPYDSVPTEVCRARDGTRSIDLTEWSLLVD
DVALRCIAAGDRERIDKLAAQSSVDKVGSHIDAMGLTAAFRGVDPSGVAR
FDASSMVAW
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mRNA from alignment at L-elsbetiae_contig14323:2843..3480-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14323.3197.1 ID=mRNA_L-elsbetiae_contig14323.3197.1|Name=mRNA_L-elsbetiae_contig14323.3197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=638bp|location=Sequence derived from alignment at L-elsbetiae_contig14323:2843..3480- (Laminarionema elsbetiae ELsaHSoW15)
ATGACCAGGGTTGCAGAAAGCGTCAAGAGCGCCATCAAGGCCTACGAGCA
AACCACCAGTCTGCCCTACGACAGCGTCCCGACAGAAGTATGTCGGGCGA
GGGACGGGACCAGGTCTATCGATCTCACGGAGTGGTCTCTGCTCGTAGAC
GACGTCGCTCTGAGATGCATAGCGGCAGGGGACAGAGAACGAATCGACAA
GCTCGCGGCCCAGAGCAGCGTGGACAAGGTGCGGCTGAAGAATATAGTGC
TCGGCCCTTCGTTTCCTGTCATGCTGCGCTGTATATTTCGAGAGGTGGCG
ACATGCTTGCCGACCTTGTACTATTGGACCGGACTCCTCTCCCAACACGG
GCGGCGCTACTAAATTATAGAGCCCTGGATCGGACGAGTATACAATTCGG
AGTATTTAGATATTAAACACTGCAACATTTGACCCGTATCAGTGTGCAAA
CTCCGGGGATCCAGAAGTGCACCATCCACATTGTCACGCGTTGACGTCGT
GTTCCAACAATTACATGGATTGGGCGTGAGACGTTGTAGGTCGGTAGCCA
TATCGATGCGATGGGGCTCACAGCGGCGTTCAGGGGCGTCGATCCTTCCG
GAGTGGCTCGATTCGACGCTTCTTCTATGGTGGCCTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14323:2843..3480-

>mRNA_L-elsbetiae_contig14323.3197.1 ID=mRNA_L-elsbetiae_contig14323.3197.1|Name=mRNA_L-elsbetiae_contig14323.3197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig14323:2843..3480- (Laminarionema elsbetiae ELsaHSoW15)
ATGACCAGGGTTGCAGAAAGCGTCAAGAGCGCCATCAAGGCCTACGAGCA
AACCACCAGTCTGCCCTACGACAGCGTCCCGACAGAAGTATGTCGGGCGA
GGGACGGGACCAGGTCTATCGATCTCACGGAGTGGTCTCTGCTCGTAGAC
GACGTCGCTCTGAGATGCATAGCGGCAGGGGACAGAGAACGAATCGACAA
GCTCGCGGCCCAGAGCAGCGTGGACAAGATGACCAGGGTTGCAGAAAGCG
TCAAGAGCGCCATCAAGGCCTACGAGCAAACCACCAGTCTGCCCTACGAC
AGCGTCCCGACAGAAGTATGTCGGGCGAGGGACGGGACCAGGTCTATCGA
TCTCACGGAGTGGTCTCTGCTCGTAGACGACGTCGCTCTGAGATGCATAG
CGGCAGGGGACAGAGAACGAATCGACAAGCTCGCGGCCCAGAGCAGCGTG
GACAAGGTCGGTAGCCATATCGATGCGATGGGGCTCACAGCGGCGTTCAG
GGGCGTCGATCCTTCCGGAGTGGCTCGATTCGACGCTTCTTCTATGGTGG
CCTGGGTCGGTAGCCATATCGATGCGATGGGGCTCACAGCGGCGTTCAGG
GGCGTCGATCCTTCCGGAGTGGCTCGATTCGACGCTTCTTCTATGGTGGC
CTGG
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