mRNA_L-elsbetiae_contig14304.3190.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14304.3190.1
Unique NamemRNA_L-elsbetiae_contig14304.3190.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14304.3190.1 vs. uniprot
Match: D7FWW4_ECTSI (Protein required for templated centriole assembly n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW4_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.190e-16
Identity = 55/86 (63.95%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:    1 TQLDDLREAHERLRLESATEIRKLRREAREGAKAVEDALTAAGEAENQAADLREELDNSERDLKQAREKQLVLRKEAARLNKDLAK 258
            +QLDDLR+AHERLRLES +EIRKLRREAREGAK VE A + AG+AE+Q A L+EEL+  ER L QAR+K    R+E   L+K+L K
Sbjct:  272 SQLDDLRDAHERLRLESTSEIRKLRREAREGAKTVEMAASTAGQAEDQVASLQEELEVCERALAQARDKH---RREVDGLDKELEK 354
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BLAST of mRNA_L-elsbetiae_contig14304.3190.1 vs. uniprot
Match: A0A6H5JQA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQA1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.520e-16
Identity = 54/84 (64.29%), Postives = 64/84 (76.19%), Query Frame = 1 
Query:    1 TQLDDLREAHERLRLESATEIRKLRREAREGAKAVEDALTAAGEAENQAADLREELDNSERDLKQAREKQLVLRKEAARLNKDL 252
            +QLDDLR+AHERLRLESA+EIRKLRREAREGAK VE A   A +AE Q A L++EL+  ER L QAR+K    R+E  RL K+L
Sbjct:  211 SQLDDLRDAHERLRLESASEIRKLRREAREGAKTVEMAARTASQAEEQVASLQDELEACERALAQARDKH---RREVERLEKEL 291
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14304.3190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWW4_ECTSI1.190e-1663.95Protein required for templated centriole assembly ... [more]
A0A6H5JQA1_9PHAE2.520e-1664.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14304contigL-elsbetiae_contig14304:3754..4403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue8.5e-15
Seed eggNOG ortholog2880.D7FWW4
Preferred nameCCDC61
KEGG koko:K16755
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0015630,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
EggNOG OGs28IZ0@1,2QRAS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.5962346-CDS-L-elsbetiae_contig14304:3753..38971622815571.5962346-CDS-L-elsbetiae_contig14304:3753..3897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14304 3754..3897 +
1691682966.540719-CDS-L-elsbetiae_contig14304:3753..38971691682966.540719-CDS-L-elsbetiae_contig14304:3753..3897Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14304 3754..3897 +
1622815571.6086044-CDS-L-elsbetiae_contig14304:4265..44031622815571.6086044-CDS-L-elsbetiae_contig14304:4265..4403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14304 4266..4403 +
1691682966.5529678-CDS-L-elsbetiae_contig14304:4265..44031691682966.5529678-CDS-L-elsbetiae_contig14304:4265..4403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14304 4266..4403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14304.3190.1prot_L-elsbetiae_contig14304.3190.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14304 3754..4403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14304.3190.1

>prot_L-elsbetiae_contig14304.3190.1 ID=prot_L-elsbetiae_contig14304.3190.1|Name=mRNA_L-elsbetiae_contig14304.3190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
TQLDDLREAHERLRLESATEIRKLRREAREGAKAVEDALTAAGEAENQAA
DLREELDNSERDLKQAREKQLVLRKEAARLNKDLAKVTFEPGT*
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mRNA from alignment at L-elsbetiae_contig14304:3754..4403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14304.3190.1 ID=mRNA_L-elsbetiae_contig14304.3190.1|Name=mRNA_L-elsbetiae_contig14304.3190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=650bp|location=Sequence derived from alignment at L-elsbetiae_contig14304:3754..4403+ (Laminarionema elsbetiae ELsaHSoW15)
ACACAGCTGGACGATCTCCGAGAGGCCCACGAGCGGCTGAGGCTGGAGTC
CGCGACGGAGATCCGGAAACTCCGTCGGGAGGCGAGGGAGGGGGCCAAGG
CCGTCGAGGACGCGCTCACGGCCGCCGGGGAGGCCGAGAACCAGGTATGT
GTGTATGTATGTATGTATGTGCGGTATCCCCTTTTTGAGAGGTTATCTCG
CAGTTGAAGAGGGAAGGTGATGATTTCACGGCCGAACTTCTTTATGGAGC
CGCAAACCACAGAGGGGGTATTTACGTAAGAGCGTTGAGCGATGCGCTTT
GGGGAGGGAGGGAAAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAG
AGAGAAAGAGAGAGAGACTTGGGGGCGATTTCTACGTAGACAAAAGCTTT
AACTTTTTTCTGGGCAGAGTTATGTGTTGTCTCGTGTGAGCGGCGGTTCC
TGTCCTCCTTTGACACCTGCAGACGTGGGTTTTGTGTCATAATGACCATT
TTGCTCTGCCAGGCGGCGGACCTTCGGGAAGAGCTGGACAACAGCGAGCG
GGATCTCAAGCAGGCCCGAGAAAAACAGCTGGTCCTGAGGAAAGAGGCCG
CCAGGCTCAACAAAGACCTCGCGAAGGTGACTTTTGAGCCCGGGACATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14304:3754..4403+

>mRNA_L-elsbetiae_contig14304.3190.1 ID=mRNA_L-elsbetiae_contig14304.3190.1|Name=mRNA_L-elsbetiae_contig14304.3190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig14304:3754..4403+ (Laminarionema elsbetiae ELsaHSoW15)
ACACAGCTGGACGATCTCCGAGAGGCCCACGAGCGGCTGAGGCTGGAGTC
CGCGACGGAGATCCGGAAACTCCGTCGGGAGGCGAGGGAGGGGGCCAAGG
CCGTCGAGGACGCGCTCACGGCCGCCGGGGAGGCCGAGAACCAGACACAG
CTGGACGATCTCCGAGAGGCCCACGAGCGGCTGAGGCTGGAGTCCGCGAC
GGAGATCCGGAAACTCCGTCGGGAGGCGAGGGAGGGGGCCAAGGCCGTCG
AGGACGCGCTCACGGCCGCCGGGGAGGCCGAGAACCAGGCGGCGGACCTT
CGGGAAGAGCTGGACAACAGCGAGCGGGATCTCAAGCAGGCCCGAGAAAA
ACAGCTGGTCCTGAGGAAAGAGGCCGCCAGGCTCAACAAAGACCTCGCGA
AGGTGACTTTTGAGCCCGGGACATGAGCGGCGGACCTTCGGGAAGAGCTG
GACAACAGCGAGCGGGATCTCAAGCAGGCCCGAGAAAAACAGCTGGTCCT
GAGGAAAGAGGCCGCCAGGCTCAACAAAGACCTCGCGAAGGTGACTTTTG
AGCCCGGGACATGA
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