mRNA_L-elsbetiae_contig14304.3189.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14304.3189.1
Unique NamemRNA_L-elsbetiae_contig14304.3189.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14304.3189.1 vs. uniprot
Match: A0A6H5JQA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQA1_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.370e-23
Identity = 64/113 (56.64%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:    4 YACRAHGADRYLILTYAAEYDRVHYPLPLAYVGSPEREQLERTIERLREDLSRRPLEAATVSARNNGXXXXXXXXXXXXXXXXXXAPRASAAQLLTENAELRRRIGALAARLE 342
            YA   +  +RYLILTYAAEYDRVHYPLPLA+V SP+R+QLERTI+RLRE+LSRR LE AT  ARN                      RA+ AQL+ EN ELRR++ ALA +LE
Sbjct:   60 YADLGNCHNRYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLREELSRRSLETATP-ARNGSKND-----------------RAAEAQLMAENTELRRQVEALAGQLE 154
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BLAST of mRNA_L-elsbetiae_contig14304.3189.1 vs. uniprot
Match: D7FWW4_ECTSI (Protein required for templated centriole assembly n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW4_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.740e-16
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:   31 RYLILTYAAEYDRVHYPLPLAYVGSPEREQLERTIERLREDLSRRPLEAATVSARN 198
            RYLILTYAAEYDRVHYPLPLA+V SP+R+QLERTI+RLRE+LSRR LE AT  ARN
Sbjct:  153 RYLILTYAAEYDRVHYPLPLAFVDSPQRQQLERTIDRLREELSRRSLETATP-ARN 207
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BLAST of mRNA_L-elsbetiae_contig14304.3189.1 vs. uniprot
Match: A0A813D5E3_9DINO (Ccdc61 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813D5E3_9DINO)

HSP 1 Score: 62.8 bits (151), Expect = 1.190e-8
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   19 HGADRYLILTYAAEYDRVHYPLPLAYVGSPEREQLERTIERLREDLSRRPLEAA 180
            H   RYLILTY  E+DRVHYPLPLA+   P  E ++RTI RLR DL+ +   AA
Sbjct:  138 HSRKRYLILTYTVEFDRVHYPLPLAFEDEPSAESMQRTIRRLRRDLAEQRSAAA 191
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BLAST of mRNA_L-elsbetiae_contig14304.3189.1 vs. uniprot
Match: E1Z707_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z707_CHLVA)

HSP 1 Score: 63.5 bits (153), Expect = 1.200e-8
Identity = 44/106 (41.51%), Postives = 54/106 (50.94%), Query Frame = 1 
Query:   16 AHGADRYLILTYAAEYDRVHYPLPLAYVGSPEREQLERTIERLREDLSRRPLEAATVSARNNGXXXXXXXXXXXXXXXXXXAPRASAAQLLTENAELRRRIGALAA 333
            A G+ RYLILTYAAE+DRVHYPLPL Y   P+ ++L+ TI +LR  L+     AA    R  G                  A  A   QL  ENA LR ++  L A
Sbjct:  149 AAGSKRYLILTYAAEFDRVHYPLPLQYEEHPDPQRLKATIRQLRAQLAAATARAAGGLGRRGGSAA---------------AAPADVKQLSEENAALRAQVQELEA 239
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BLAST of mRNA_L-elsbetiae_contig14304.3189.1 vs. uniprot
Match: A0A7S0K2G7_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K2G7_CAFRO)

HSP 1 Score: 62.8 bits (151), Expect = 1.490e-8
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   19 HGADRYLILTYAAEYDRVHYPLPLAYVGSPEREQLERTIERLREDLSRRPLEAA 180
            H   RYLILTY  E+DRVHYPLPLA+   P  E ++RTI RLR DL+ +   AA
Sbjct:   23 HSRKRYLILTYTVEFDRVHYPLPLAFEDEPSAESMQRTIRRLRRDLAEQRSAAA 76
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BLAST of mRNA_L-elsbetiae_contig14304.3189.1 vs. uniprot
Match: A0A5A8CZT1_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CZT1_CAFRO)

HSP 1 Score: 62.8 bits (151), Expect = 1.690e-8
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   19 HGADRYLILTYAAEYDRVHYPLPLAYVGSPEREQLERTIERLREDLSRRPLEAA 180
            H   RYLILTY  E+DRVHYPLPLA+   P  E ++RTI RLR DL+ +   AA
Sbjct:  121 HSRKRYLILTYTVEFDRVHYPLPLAFEDEPSAESMQRTIRRLRRDLAEQRSAAA 174
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BLAST of mRNA_L-elsbetiae_contig14304.3189.1 vs. uniprot
Match: A0A5A8DEV3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DEV3_CAFRO)

HSP 1 Score: 62.8 bits (151), Expect = 2.110e-8
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   19 HGADRYLILTYAAEYDRVHYPLPLAYVGSPEREQLERTIERLREDLSRRPLEAA 180
            H   RYLILTY  E+DRVHYPLPLA+   P  E ++RTI RLR DL+ +   AA
Sbjct:  121 HSRKRYLILTYTVEFDRVHYPLPLAFEDEPSAESMQRTIRRLRRDLAEQRSAAA 174
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BLAST of mRNA_L-elsbetiae_contig14304.3189.1 vs. uniprot
Match: A0A2P6TPY4_CHLSO (Coiled-coil domain-containing 61-like isoform X1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TPY4_CHLSO)

HSP 1 Score: 60.8 bits (146), Expect = 1.030e-7
Identity = 52/104 (50.00%), Postives = 61/104 (58.65%), Query Frame = 1 
Query:   31 RYLILTYAAEYDRVHYPLPLAYVGSPEREQLERTIERLREDLSRRPLEAATVSARNNGXXXXXXXXXXXXXXXXXXAPRASAAQLLTENAELRRRIGALAARLE 342
            RYLILTYAAE+DRVHYPLPLA+   P+  +L+ TI +LR  L      AA  +    G        XXXXXXXXXX       QL  ENA LR R+ AL A L+
Sbjct:  136 RYLILTYAAEFDRVHYPLPLAFEEHPDPRRLQATIRQLRTQL------AAAQARSTGGLGRRAGASXXXXXXXXXXXXXXXXXQLREENAALRARVQALEAALD 233
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BLAST of mRNA_L-elsbetiae_contig14304.3189.1 vs. uniprot
Match: K3W5W9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W5W9_GLOUD)

HSP 1 Score: 60.1 bits (144), Expect = 1.280e-7
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   31 RYLILTYAAEYDRVHYPLPLAYVGSPEREQLERTIERLREDL 156
            RYLILTYA E+DRVHYPLPLA V +P  E L+RTI RLR++L
Sbjct:  157 RYLILTYAVEFDRVHYPLPLALVQTPSPEILQRTIRRLRQEL 198
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BLAST of mRNA_L-elsbetiae_contig14304.3189.1 vs. uniprot
Match: C3YL75_BRAFL (Uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YL75_BRAFL)

HSP 1 Score: 59.7 bits (143), Expect = 1.660e-7
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   31 RYLILTYAAEYDRVHYPLPLAYVGSPEREQLERTIERLREDLSR 162
            RYLILTY  E+DR+HYPLPL YVG P+   L+ TI RL E +SR
Sbjct:  120 RYLILTYTVEFDRIHYPLPLPYVGKPDPAVLQETIRRLNEQISR 163
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14304.3189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQA1_9PHAE3.370e-2356.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWW4_ECTSI1.740e-1682.14Protein required for templated centriole assembly ... [more]
A0A813D5E3_9DINO1.190e-857.41Ccdc61 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
E1Z707_CHLVA1.200e-841.51Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7S0K2G7_CAFRO1.490e-857.41Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8CZT1_CAFRO1.690e-857.41Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A5A8DEV3_CAFRO2.110e-857.41Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A2P6TPY4_CHLSO1.030e-750.00Coiled-coil domain-containing 61-like isoform X1 n... [more]
K3W5W9_GLOUD1.280e-771.43Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
C3YL75_BRAFL1.660e-763.64Uncharacterized protein (Fragment) n=1 Tax=Branchi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14304contigL-elsbetiae_contig14304:423..3026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue3.1e-15
Seed eggNOG ortholog2880.D7FWW4
Preferred nameCCDC61
KEGG koko:K16755
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0015630,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
EggNOG OGs28IZ0@1,2QRAS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons3
Model size510
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14304.3189.1prot_L-elsbetiae_contig14304.3189.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14304 423..3026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815571.530626-CDS-L-elsbetiae_contig14304:422..5721622815571.530626-CDS-L-elsbetiae_contig14304:422..572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14304 423..572 +
1691682966.5120077-CDS-L-elsbetiae_contig14304:422..5721691682966.5120077-CDS-L-elsbetiae_contig14304:422..572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14304 423..572 +
1622815571.5445962-CDS-L-elsbetiae_contig14304:1588..17291622815571.5445962-CDS-L-elsbetiae_contig14304:1588..1729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14304 1589..1729 +
1691682966.5234644-CDS-L-elsbetiae_contig14304:1588..17291691682966.5234644-CDS-L-elsbetiae_contig14304:1588..1729Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14304 1589..1729 +
1622815571.5620923-CDS-L-elsbetiae_contig14304:2807..30261622815571.5620923-CDS-L-elsbetiae_contig14304:2807..3026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14304 2808..3026 +
1691682966.531379-CDS-L-elsbetiae_contig14304:2807..30261691682966.531379-CDS-L-elsbetiae_contig14304:2807..3026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14304 2808..3026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14304.3189.1

>prot_L-elsbetiae_contig14304.3189.1 ID=prot_L-elsbetiae_contig14304.3189.1|Name=mRNA_L-elsbetiae_contig14304.3189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
MYACRAHGADRYLILTYAAEYDRVHYPLPLAYVGSPEREQLERTIERLRE
DLSRRPLEAATVSARNNGGRIGGGGGGGGDAGGAENAPRASAAQLLTENA
ELRRRIGALAARLEESEAPPSSSLVRRNGGEEEDGQGRGLRGVGALDGGG
AGGARLKRLRRAHEELQAR*
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mRNA from alignment at L-elsbetiae_contig14304:423..3026+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14304.3189.1 ID=mRNA_L-elsbetiae_contig14304.3189.1|Name=mRNA_L-elsbetiae_contig14304.3189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2604bp|location=Sequence derived from alignment at L-elsbetiae_contig14304:423..3026+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGCATGCCGCGCGCACGGGGCCGACAGGTACCTTATCCTGACATA
TGCCGCTGAGTACGATCGGGTGCACTACCCCCTCCCCCTCGCGTACGTGG
GGTCGCCCGAGCGGGAGCAGCTCGAGCGGACCATCGAGAGGCTGAGGGAG
GTGAGGAAGGAAAAAGGGGGCGATGAGATGCAAAGATGAGTTTTGCCCAA
GTTCACTCACTTGCCGCCGCCCGAGAGAGCGCTATCGTCAACTGGCAACA
GGGGAAGGGTTTTGGGAGAAGTTTGGTATTCCTCTGCTTGAATTCAGAAA
TAGCCCGTGTTTACGTAACGATAAAAAGCCCGTGGCGGGGGGGCAGGGAG
TTTACCGACGCGTCCATAGAGGACACCATCAACCGGCTAATGTAGCTGAA
AGGAGTAAACCGTAACGCGCTGTAGCTTTGGCCTTGGCTCAACGTTTTGG
GCGACGAATAACATTGTGTGTGGGGCGTACTTTTATTATTTTTTAAGTAT
TGATTTATTTTCTTGGGATTGGGGAGGGAATATCTATAAGTCTTTTTATA
GTGGAGTGTTCTTCATTTTATTTCTGTCTTATTTTATTTTATTTTATTTT
TTTCCGGTTTGGGGGGAGGTAATAACTATACAAACGTTAACGTTTCGCAG
CGTTCGTGCCTCTTGCGCGCATCTTGCCTTCTGAGAGGGGGGTTCGCTGA
TCCGCGTAGGTATCAACGCTGACGGCGAAACTCACTGGAAGCTTGCGTCG
TGGGTGCCTACCCATATAAATAGTGCCGCCAGCGTTGCTGCTGCTGACAC
GTGGATAGGATTTGACTCGTAAGGGACTCAGGGGCGCGGCCGGAGGGGAC
CCGCAGATAGGATTTGACTCGGTAGGCTCCTTTTTTTTCGTTTTACCTCC
ACCTTCTTTTTCTCTACACTTACGCCCAGTATAACAAGGGTTTTTGTTCC
GCCGCAATTTCGCAAAAAAAGCCTGCATATTGACCGAGGCAAAAGCCTAT
TTAGGGGCCCCCAGGTATTTACTGCTGTATCTAGCTGCCTGAAATTGAAC
TGAGTAGCCGCCTGGTGTCGCACTCTGCCCTAATAACCCCAACCCTAGAG
CCCTAACCCTATGTATCTGTCTTTTGTCTGCTTGGCTGCCGGATCTTTCG
TTTTGCGGTGAAAAAGGACCTGTCTCGGCGTCCGCTCGAGGCGGCGACGG
TGTCGGCGAGAAACAACGGCGGCCGGATTGGCGGCGGCGGCGGCGGCGGC
GGCGACGCTGGTGGTGCGGAGAACGCGCCGCGAGCATCGGCCGCGCAGCT
CCTGACGGTGAGTGGGCTCACGCCCCGGACCACCTTCCTTCGCGCGAAGA
AATTAAGTGTGTACCGTAGGTGACACAAGATACCACACCCCCTGGACCGA
ATTTTAGAGTTCCATAACTCCGTAACGAAGACGGCGCCAGCACCAAACGA
TAGATTTTCGAACAGCCCTCGACTAGATTTTTCCAAAGCCACCCTTTTCG
GCACTGGCACCCTCTTCGTTACGGAGTAATGCAGCTCTAAAATTCGGTCC
GGGGGGTGTGGTATCTTGTGTCACCTACGGTATGTACTGTATGTGTCTAG
GAAGTAGAGGCGAGAGTTCCGCAACCCTGACCCTATCCCTAACCCTAGAC
CCTAGACCCTAGACCCTATGTAACTCCAAGCCCCGAACCCTCTCTCCCGA
TTCCTATACTTTAGTAGCTCACATGTTATGCAGCTCCAGACAAACCCTTG
CGTATGTTATGTGTGTAGGCTACTGCGCGCCCTCCCCGACCCCTGCGCGA
GGGTTGATATGGTAGGTATCTAATACTCTAAATACGGAGAATACCACTGC
TGTGTAGCCAGAGGCCGAGACTCGCGAGAAAGCTGCCATATTTAGGAGAC
AATAAATAGAACCTCTCCTGCAGTACCGGGCGCGCACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACGCA
CACACACCTGTTACTCCGCTTTTTTTCACCCCGAGAATCCCGCGGCTACA
TTCATCTGTTAAAACATAAAAACATTTTCTTTTTCTGAGACACGTGTTTC
GCAGAAGGAGAGCGCCCCGAGTCTGTCGATGTTGACGCTACTGTACCGCT
CTCCGTGTCCTGGGTCTCTTTTGGCGTTGGGGGGGGGGGGAGGCAACAAG
GTCGAGGCCGACGTACGTAGCGTAAAAACAAGTGAAAAGAGATGTGTGCT
GTCTGTCAGAGACGAACACGCACACTCGGGTAGGCAGCAAGTAGTAGCCA
GGCAGGCCCAACACACGAGCACGCCTCCAGCGTCGCCCCACCCCTCCCCC
CCCTCCCGCCTGTTCCCTCACGGAACACGCGCCAGGAAAATGCGGAGCTC
CGGAGGCGAATAGGAGCGCTCGCCGCCAGGCTTGAGGAGTCGGAGGCGCC
GCCATCGTCGTCGCTGGTCAGGCGAAACGGCGGCGAGGAGGAGGACGGTC
AGGGGAGGGGGCTCCGGGGGGTGGGGGCGTTAGACGGGGGCGGGGCGGGA
GGGGCCAGGCTCAAAAGGCTGCGGCGGGCTCACGAGGAGTTGCAGGCGAG
ATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14304:423..3026+

>mRNA_L-elsbetiae_contig14304.3189.1 ID=mRNA_L-elsbetiae_contig14304.3189.1|Name=mRNA_L-elsbetiae_contig14304.3189.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig14304:423..3026+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGCATGCCGCGCGCACGGGGCCGACAGGTACCTTATCCTGACATA
TGCCGCTGAGTACGATCGGGTGCACTACCCCCTCCCCCTCGCGTACGTGG
GGTCGCCCGAGCGGGAGCAGCTCGAGCGGACCATCGAGAGGCTGAGGGAG
ATGTATGCATGCCGCGCGCACGGGGCCGACAGGTACCTTATCCTGACATA
TGCCGCTGAGTACGATCGGGTGCACTACCCCCTCCCCCTCGCGTACGTGG
GGTCGCCCGAGCGGGAGCAGCTCGAGCGGACCATCGAGAGGCTGAGGGAG
GACCTGTCTCGGCGTCCGCTCGAGGCGGCGACGGTGTCGGCGAGAAACAA
CGGCGGCCGGATTGGCGGCGGCGGCGGCGGCGGCGGCGACGCTGGTGGTG
CGGAGAACGCGCCGCGAGCATCGGCCGCGCAGCTCCTGACGGACCTGTCT
CGGCGTCCGCTCGAGGCGGCGACGGTGTCGGCGAGAAACAACGGCGGCCG
GATTGGCGGCGGCGGCGGCGGCGGCGGCGACGCTGGTGGTGCGGAGAACG
CGCCGCGAGCATCGGCCGCGCAGCTCCTGACGGAAAATGCGGAGCTCCGG
AGGCGAATAGGAGCGCTCGCCGCCAGGCTTGAGGAGTCGGAGGCGCCGCC
ATCGTCGTCGCTGGTCAGGCGAAACGGCGGCGAGGAGGAGGACGGTCAGG
GGAGGGGGCTCCGGGGGGTGGGGGCGTTAGACGGGGGCGGGGCGGGAGGG
GCCAGGCTCAAAAGGCTGCGGCGGGCTCACGAGGAGTTGCAGGCGAGATG
AGAAAATGCGGAGCTCCGGAGGCGAATAGGAGCGCTCGCCGCCAGGCTTG
AGGAGTCGGAGGCGCCGCCATCGTCGTCGCTGGTCAGGCGAAACGGCGGC
GAGGAGGAGGACGGTCAGGGGAGGGGGCTCCGGGGGGTGGGGGCGTTAGA
CGGGGGCGGGGCGGGAGGGGCCAGGCTCAAAAGGCTGCGGCGGGCTCACG
AGGAGTTGCAGGCGAGATGA
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