mRNA_L-elsbetiae_contig143.3187.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig143.3187.1
Unique NamemRNA_L-elsbetiae_contig143.3187.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig143.3187.1 vs. uniprot
Match: A0A6H5K372_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K372_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.360e-14
Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:  250 GFGNGGAVVVFQLLMQRWSLRPWVVVPRTLVATKEQLALMDEDHSRIRNTN 402
            G G+ G VVVFQLL+QRW LRPWVVVPRTLVATKE+LALMDEDHSR+ +++
Sbjct: 1717 GGGHEGTVVVFQLLVQRWELRPWVVVPRTLVATKEKLALMDEDHSRVSSSS 1767
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BLAST of mRNA_L-elsbetiae_contig143.3187.1 vs. uniprot
Match: D8LMA8_ECTSI (Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA8_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.570e-7
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:  250 GFGNGGAVVVFQLLMQRWSLRPWVVVPRTLVATKEQLAL 366
            G G+ G VVVFQLL+QRW LRPWVVVPRTLVATKE++ +
Sbjct: 1776 GGGHEGTVVVFQLLVQRWELRPWVVVPRTLVATKEKVVV 1814
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BLAST of mRNA_L-elsbetiae_contig143.3187.1 vs. uniprot
Match: A0A835YZK0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZK0_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 9.370e-5
Identity = 22/42 (52.38%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:  256 GNGGAVVVFQLLMQRWSLRPWVVVPRTLVATKEQLALMDEDH 381
            G   A+ ++QL++QRW LRPWV  PR+L+AT  +L L DE H
Sbjct:  604 GRESALALYQLVLQRWPLRPWVAAPRSLLATASELVLCDESH 645
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig143.3187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K372_9PHAE1.360e-1476.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMA8_ECTSI1.570e-774.36Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ecto... [more]
A0A835YZK0_9STRA9.370e-552.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig143contigL-elsbetiae_contig143:41980..43546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog2880.D8LMA8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.norepinephrine secretion
EggNOG OGsKOG1259@2759,KOG1859@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size712
Cds size711
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.9370837-CDS-L-elsbetiae_contig143:41979..423361622815570.9370837-CDS-L-elsbetiae_contig143:41979..42336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig143 41980..42336 +
1691682966.0956547-CDS-L-elsbetiae_contig143:41979..423361691682966.0956547-CDS-L-elsbetiae_contig143:41979..42336Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig143 41980..42336 +
1622815570.948065-CDS-L-elsbetiae_contig143:43192..435461622815570.948065-CDS-L-elsbetiae_contig143:43192..43546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig143 43193..43546 +
1691682966.1070697-CDS-L-elsbetiae_contig143:43192..435461691682966.1070697-CDS-L-elsbetiae_contig143:43192..43546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig143 43193..43546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig143.3187.1prot_L-elsbetiae_contig143.3187.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig143 41980..43546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig143.3187.1

>prot_L-elsbetiae_contig143.3187.1 ID=prot_L-elsbetiae_contig143.3187.1|Name=mRNA_L-elsbetiae_contig143.3187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=237bp
GFGTREADSPEGLTARELSAKGAYEREGFAVVFPPAASPSLAAGATSGGD
GEASQFSSVCDDARGDAGGATAPGDDGGGGGVDGFGNGGAVVVFQLLMQR
WSLRPWVVVPRTLVATKEQLALMDEDHSRIRNTNDGSSLLGVPWESATAT
AASTPARSPPPPPPPPFQGGDVSPPRESAGEVFSPERGWSTGVDPGYFAD
VRQASPLNDDDSNSSYSGAFPPSSPGGGRGDRGGAAG
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mRNA from alignment at L-elsbetiae_contig143:41980..43546+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig143.3187.1 ID=mRNA_L-elsbetiae_contig143.3187.1|Name=mRNA_L-elsbetiae_contig143.3187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1567bp|location=Sequence derived from alignment at L-elsbetiae_contig143:41980..43546+ (Laminarionema elsbetiae ELsaHSoW15)
GGATTTGGCACGCGCGAGGCAGACAGCCCGGAGGGGCTGACCGCGAGAGA
GCTCTCTGCGAAAGGGGCCTACGAGCGGGAAGGTTTCGCTGTCGTGTTCC
CGCCCGCTGCTTCGCCGTCGCTCGCCGCCGGCGCCACCTCAGGCGGTGAC
GGCGAAGCGTCCCAGTTTTCGTCCGTGTGTGACGACGCCCGCGGTGACGC
CGGCGGGGCGACCGCCCCCGGCGATGACGGCGGCGGCGGCGGGGTTGACG
GCTTCGGCAACGGAGGGGCGGTCGTGGTGTTCCAGCTGCTGATGCAGCGC
TGGAGTCTTCGGCCCTGGGTGGTAGTCCCGCGGACGCTGGTCGCCACGAA
GGAGCAGGTAAGGGCCGCCTCAGTACGTTCTCGAGTGGGCGGGGATGGGT
GCGTTGCGCCGCCCTCTCTCTTGCTGGATGGCGGCCTAAAATGCTGCTCG
AGGAATCCGGAGGGTCGAGAGATCTTGAGGGTCGCTGAGCCAGCCACACA
CGCAGCATCGGCGGCTATTGGTTTTCCTAAGACACCTGTCTGCATGTTAA
GGGGTTGTCATCTAGATGCAATTCCTTGTCGTCCCATCACCCAGAGACTG
ACCCGCGGTCAGATGGGACCGCCTACGCAGAAATTAATTTTATACGACTA
ACCCTAACCCTAACCCTAACCCCAACCACCGACCCCCCCAAACGGTTTCC
ATACTTTTATCCCATATGTTAGCTTAAGACAAAAACCCCGCGTAGACTAC
TGGTCAGATGGCGGAAGGCGCCCGCGAGCCGCCGCGAAATAGCGCGGCCA
GTCTTCCTTCCAACGGCCCGCGGGAGCTACTGCTGTCGCTCGCAAGTGCT
GTTGAGGGCTAGGGTTGGAGGGTTAGGGCTGTGAAATCTACTTACTGACT
GCTGTCGCTCATAACTTATTTTTGGCGTGAATTCTCGAGGAGATACGGAC
ATGCACACCTCCATCAAGACTGGCTGGGTTCTTACGGGTGAGGTTTTGTT
TTGGGGGGAGCATCGCGCTCCCGAACGGCACAATCTGCGGCGAAAACGGC
CGTGGCTGGCCGTCTTTTTCCTGCGGCAAACACACGAGTTCCGCTTTGAG
AGGTCCGCTCCTGGTGTATCTTCAGCTCACCCGCCGCTCGCCCACCCCAC
CCACGCCGACGCTGGCTCCCTCCGGCGCGCTTCTGCGCTGCGAAATTACC
TCACGAATTCCAGCTGGCGCTCATGGACGAGGACCACAGTCGCATCCGCA
ACACCAACGACGGCAGCAGCCTGCTCGGTGTGCCGTGGGAGAGCGCCACC
GCCACCGCCGCCAGCACCCCCGCGAGATCGCCGCCACCGCCGCCGCCGCC
GCCGTTCCAAGGGGGCGACGTATCTCCCCCCCGAGAGAGCGCAGGGGAAG
TCTTTTCTCCGGAGCGGGGGTGGTCGACAGGTGTCGACCCGGGATACTTC
GCCGACGTCCGGCAGGCGTCGCCGCTCAACGACGACGACAGCAATAGCAG
CTATTCGGGCGCCTTTCCCCCGTCTTCGCCCGGCGGGGGCAGGGGCGACC
GTGGGGGTGCAGCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig143:41980..43546+

>mRNA_L-elsbetiae_contig143.3187.1 ID=mRNA_L-elsbetiae_contig143.3187.1|Name=mRNA_L-elsbetiae_contig143.3187.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1422bp|location=Sequence derived from alignment at L-elsbetiae_contig143:41980..43546+ (Laminarionema elsbetiae ELsaHSoW15)
GGATTTGGCACGCGCGAGGCAGACAGCCCGGAGGGGCTGACCGCGAGAGA
GCTCTCTGCGAAAGGGGCCTACGAGCGGGAAGGTTTCGCTGTCGTGTTCC
CGCCCGCTGCTTCGCCGTCGCTCGCCGCCGGCGCCACCTCAGGCGGTGAC
GGCGAAGCGTCCCAGTTTTCGTCCGTGTGTGACGACGCCCGCGGTGACGC
CGGCGGGGCGACCGCCCCCGGCGATGACGGCGGCGGCGGCGGGGTTGACG
GCTTCGGCAACGGAGGGGCGGTCGTGGTGTTCCAGCTGCTGATGCAGCGC
TGGAGTCTTCGGCCCTGGGTGGTAGTCCCGCGGACGCTGGTCGCCACGAA
GGAGCAGGGATTTGGCACGCGCGAGGCAGACAGCCCGGAGGGGCTGACCG
CGAGAGAGCTCTCTGCGAAAGGGGCCTACGAGCGGGAAGGTTTCGCTGTC
GTGTTCCCGCCCGCTGCTTCGCCGTCGCTCGCCGCCGGCGCCACCTCAGG
CGGTGACGGCGAAGCGTCCCAGTTTTCGTCCGTGTGTGACGACGCCCGCG
GTGACGCCGGCGGGGCGACCGCCCCCGGCGATGACGGCGGCGGCGGCGGG
GTTGACGGCTTCGGCAACGGAGGGGCGGTCGTGGTGTTCCAGCTGCTGAT
GCAGCGCTGGAGTCTTCGGCCCTGGGTGGTAGTCCCGCGGACGCTGGTCG
CCACGAAGGAGCAGCTGGCGCTCATGGACGAGGACCACAGTCGCATCCGC
AACACCAACGACGGCAGCAGCCTGCTCGGTGTGCCGTGGGAGAGCGCCAC
CGCCACCGCCGCCAGCACCCCCGCGAGATCGCCGCCACCGCCGCCGCCGC
CGCCGTTCCAAGGGGGCGACGTATCTCCCCCCCGAGAGAGCGCAGGGGAA
GTCTTTTCTCCGGAGCGGGGGTGGTCGACAGGTGTCGACCCGGGATACTT
CGCCGACGTCCGGCAGGCGTCGCCGCTCAACGACGACGACAGCAATAGCA
GCTATTCGGGCGCCTTTCCCCCGTCTTCGCCCGGCGGGGGCAGGGGCGAC
CGTGGGGGTGCAGCGGGGCTGGCGCTCATGGACGAGGACCACAGTCGCAT
CCGCAACACCAACGACGGCAGCAGCCTGCTCGGTGTGCCGTGGGAGAGCG
CCACCGCCACCGCCGCCAGCACCCCCGCGAGATCGCCGCCACCGCCGCCG
CCGCCGCCGTTCCAAGGGGGCGACGTATCTCCCCCCCGAGAGAGCGCAGG
GGAAGTCTTTTCTCCGGAGCGGGGGTGGTCGACAGGTGTCGACCCGGGAT
ACTTCGCCGACGTCCGGCAGGCGTCGCCGCTCAACGACGACGACAGCAAT
AGCAGCTATTCGGGCGCCTTTCCCCCGTCTTCGCCCGGCGGGGGCAGGGG
CGACCGTGGGGGTGCAGCGGGG
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