mRNA_L-elsbetiae_contig14297.3184.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14297.3184.1
Unique NamemRNA_L-elsbetiae_contig14297.3184.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14297.3184.1 vs. uniprot
Match: A0A836CIF6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.860e-17
Identity = 49/154 (31.82%), Postives = 83/154 (53.90%), Query Frame = 1 
Query:    7 EGQIRRKKQENRISKKLKEWGFSYDCETTINSRRQDCLTDTERYYSRLDFTIINCTNAVLIFEVDEEQHTWYNLSCEFSRMVDVTASLATSGYDLPIYWIRYSPNGTYHVDSGKQKMDRVAREAKLKAHLEFLCSPDFDPQNKMTVHYMFYDLQ 468
            E Q+R+KK E  + K LKE  F+ D E  I  R  + + + ++ Y+R+D  + N T  V+I E+DE+ H +Y + CE +RM+ +  +L   G   P+ +IR++P+G    D  K  + +  R   LK +L  +   D    + + + Y+FY  Q
Sbjct:  103 ENQMRQKKMEFAVMKYLKENSFNLDDEVHI--RYNESVVNADKAYARIDLFVCNITAYVVILEIDEKAHRFYEVRCEQTRMLQIDDALRKGGIAAPVVFIRFNPDGLVTRDGQKFTISQEERLEYLKQYLTSIVDGDVIFSDPINLVYLFYPTQ 254
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14297.3184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CIF6_9STRA2.860e-1731.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14297contigL-elsbetiae_contig14297:4019..4528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.9015906-CDS-L-elsbetiae_contig14297:4018..45281622815570.9015906-CDS-L-elsbetiae_contig14297:4018..4528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14297 4019..4528 -
1691682966.0857651-CDS-L-elsbetiae_contig14297:4018..45281691682966.0857651-CDS-L-elsbetiae_contig14297:4018..4528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14297 4019..4528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14297.3184.1prot_L-elsbetiae_contig14297.3184.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14297 4019..4528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14297.3184.1

>prot_L-elsbetiae_contig14297.3184.1 ID=prot_L-elsbetiae_contig14297.3184.1|Name=mRNA_L-elsbetiae_contig14297.3184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=170bp
TIEGQIRRKKQENRISKKLKEWGFSYDCETTINSRRQDCLTDTERYYSRL
DFTIINCTNAVLIFEVDEEQHTWYNLSCEFSRMVDVTASLATSGYDLPIY
WIRYSPNGTYHVDSGKQKMDRVAREAKLKAHLEFLCSPDFDPQNKMTVHY
MFYDLQSREDGPIILDDADF
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mRNA from alignment at L-elsbetiae_contig14297:4019..4528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14297.3184.1 ID=mRNA_L-elsbetiae_contig14297.3184.1|Name=mRNA_L-elsbetiae_contig14297.3184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig14297:4019..4528- (Laminarionema elsbetiae ELsaHSoW15)
ACCATCGAAGGGCAGATTAGGCGCAAGAAGCAGGAGAATCGGATTTCGAA
GAAGCTCAAAGAATGGGGCTTTAGTTATGATTGCGAAACTACTATAAACT
CGAGAAGACAGGACTGTCTGACGGACACTGAGCGGTACTACTCACGGCTT
GATTTCACGATCATCAACTGCACCAATGCGGTTCTCATTTTTGAAGTGGA
TGAAGAGCAGCACACTTGGTACAATCTGAGCTGCGAGTTCAGTCGAATGG
TAGACGTCACGGCATCATTGGCCACCTCGGGGTACGACCTACCAATCTAC
TGGATCCGTTACAGCCCGAATGGGACGTATCACGTGGACTCGGGGAAGCA
GAAGATGGATAGGGTCGCGCGCGAGGCGAAGCTGAAGGCGCACTTGGAGT
TTCTTTGTTCTCCGGACTTCGATCCCCAGAACAAAATGACTGTCCATTAC
ATGTTTTATGACCTTCAGTCAAGGGAAGATGGGCCTATTATCCTCGATGA
CGCGGACTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14297:4019..4528-

>mRNA_L-elsbetiae_contig14297.3184.1 ID=mRNA_L-elsbetiae_contig14297.3184.1|Name=mRNA_L-elsbetiae_contig14297.3184.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1020bp|location=Sequence derived from alignment at L-elsbetiae_contig14297:4019..4528- (Laminarionema elsbetiae ELsaHSoW15)
ACCATCGAAGGGCAGATTAGGCGCAAGAAGCAGGAGAATCGGATTTCGAA
GAAGCTCAAAGAATGGGGCTTTAGTTATGATTGCGAAACTACTATAAACT
CGAGAAGACAGGACTGTCTGACGGACACTGAGCGGTACTACTCACGGCTT
GATTTCACGATCATCAACTGCACCAATGCGGTTCTCATTTTTGAAGTGGA
TGAAGAGCAGCACACTTGGTACAATCTGAGCTGCGAGTTCAGTCGAATGG
TAGACGTCACGGCATCATTGGCCACCTCGGGGTACGACCTACCAATCTAC
TGGATCCGTTACAGCCCGAATGGGACGTATCACGTGGACTCGGGGAAGCA
GAAGATGGATAGGGTCGCGCGCGAGGCGAAGCTGAAGGCGCACTTGGAGT
TTCTTTGTTCTCCGGACTTCGATCCCCAGAACAAAATGACTGTCCATTAC
ATGTTTTATGACCTTCAGTCAAGGGAAGATGGGCCTATTATCCTCGATGA
CGCGGACTTTACCATCGAAGGGCAGATTAGGCGCAAGAAGCAGGAGAATC
GGATTTCGAAGAAGCTCAAAGAATGGGGCTTTAGTTATGATTGCGAAACT
ACTATAAACTCGAGAAGACAGGACTGTCTGACGGACACTGAGCGGTACTA
CTCACGGCTTGATTTCACGATCATCAACTGCACCAATGCGGTTCTCATTT
TTGAAGTGGATGAAGAGCAGCACACTTGGTACAATCTGAGCTGCGAGTTC
AGTCGAATGGTAGACGTCACGGCATCATTGGCCACCTCGGGGTACGACCT
ACCAATCTACTGGATCCGTTACAGCCCGAATGGGACGTATCACGTGGACT
CGGGGAAGCAGAAGATGGATAGGGTCGCGCGCGAGGCGAAGCTGAAGGCG
CACTTGGAGTTTCTTTGTTCTCCGGACTTCGATCCCCAGAACAAAATGAC
TGTCCATTACATGTTTTATGACCTTCAGTCAAGGGAAGATGGGCCTATTA
TCCTCGATGACGCGGACTTT
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