mRNA_L-elsbetiae_contig1429.3181.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1429.3181.1
Unique NamemRNA_L-elsbetiae_contig1429.3181.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1429.3181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1429contigL-elsbetiae_contig1429:11724..13003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815570.746442-CDS-L-elsbetiae_contig1429:11724..120211622815570.746442-CDS-L-elsbetiae_contig1429:11724..12021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1429 11725..12021 -
1691682965.994217-CDS-L-elsbetiae_contig1429:11724..120211691682965.994217-CDS-L-elsbetiae_contig1429:11724..12021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1429 11725..12021 -
1622815570.758375-CDS-L-elsbetiae_contig1429:12946..130031622815570.758375-CDS-L-elsbetiae_contig1429:12946..13003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1429 12947..13003 -
1691682966.0030189-CDS-L-elsbetiae_contig1429:12946..130031691682966.0030189-CDS-L-elsbetiae_contig1429:12946..13003Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1429 12947..13003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1429.3181.1prot_L-elsbetiae_contig1429.3181.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1429 11725..13003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1429.3181.1

>prot_L-elsbetiae_contig1429.3181.1 ID=prot_L-elsbetiae_contig1429.3181.1|Name=mRNA_L-elsbetiae_contig1429.3181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
PPSGTRLNEASDARSGSRVGRPASGDLASKRTSAAMVARKTSSAFNTSAT
VGGSQQRKPSAAVAALGHRPSVAARSGRKPSVAVSVGASKRSSVAAYRET
KKDLLSSHRKVSQQGAGA
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mRNA from alignment at L-elsbetiae_contig1429:11724..13003-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1429.3181.1 ID=mRNA_L-elsbetiae_contig1429.3181.1|Name=mRNA_L-elsbetiae_contig1429.3181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1280bp|location=Sequence derived from alignment at L-elsbetiae_contig1429:11724..13003- (Laminarionema elsbetiae ELsaHSoW15)
CCGCCATCGGGGACACGCTTGAACGAGGCGTCGGATGCTCGCTCCGGTTC
TAGAGTGGTGAGTTGGAAGCTGCCGGTGGTTCCTTTCCCCGGTGCTGCTG
TCCTCGTCGCCGTCGTTGTCCTCATCGTCGACGCAGCCGCCCCGAAGTTG
TCGTCAGGCTTACCGTCGTGGTTGTCCTGTCTCCATCAGATGCCGTGATT
GGCCCGACAGCGTTCATGGTATCAGTCAGCTAAAGTCCCATTTTCTGCCT
CTCGGGAAATATAAACCAACAAGCAGCCTTGGGCTTTTTGACGGCCACCG
CTATTGTTCCGGCGACACCCCCCTTCAGCTCAACTACTAAATCCATGTCT
TAGTGGTTTCCGCTATTTAGACGTCGCGGAGCCAAAGAGCCGAGAGACCG
CGTGGCAGGTAAAGAGCATCGGCTGCCTCGTAACACAAAACGGGATGTAG
TCTTGTTCTGGGTACGGTTCGATCTGTGATTGGCCAGTAATCTCGACGAA
ACACTCCGACCATGGAATCCGCCAAGGTCCAATCCCCACGGCGCCGCTGA
TTTCCTGCACACGGCTCTAAGAGTTTCCCTATATGTAGGGCTTGAATGCC
GAAGGCCAAACCGATACATACACAGCCTGGCACGCAAACCCCGACCCGCG
CCCCAACCGACCATTGTCGCTCACCTAAAAGGCGTGCAATTATACTTGTA
TAAATTCGACCTCACCGTCGACGAGGGAAAGGGACGGCTGAACCCTTCTC
GCAACAAAAATCTTAGGCAAAGCACCGCAGACGGGGGGAGTGGGGGCCTT
GGGGAAAGAAACCCTTCTGTGCGACCACGGTTCAGTACTCTGGCAAGATG
CCCTCGTGACAGGGAGCCCATCGAGCACTGAAAATACATGTGAAGAAGAA
AAACAAATAAACAAAATACGATGATTCCGCAACAAACCAAAAGCCCGGCA
CACCGATTCCGCACAACCGCCGTCCTTTTCAGGGGCGACCGGCGTCCGGC
GACCTGGCATCGAAACGGACCTCTGCGGCCATGGTCGCCAGGAAGACGTC
CTCGGCGTTCAACACGAGCGCCACCGTGGGGGGCTCGCAGCAGAGAAAGC
CTTCCGCCGCCGTGGCCGCGCTGGGCCACCGACCGTCGGTCGCCGCGAGA
TCGGGCAGAAAGCCCTCCGTGGCCGTGAGCGTGGGGGCGTCGAAGCGGTC
GTCCGTGGCGGCGTACCGAGAAACCAAGAAGGATCTCCTCTCGAGCCACC
GGAAAGTGTCGCAGCAGGGGGCCGGCGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1429:11724..13003-

>mRNA_L-elsbetiae_contig1429.3181.1 ID=mRNA_L-elsbetiae_contig1429.3181.1|Name=mRNA_L-elsbetiae_contig1429.3181.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig1429:11724..13003- (Laminarionema elsbetiae ELsaHSoW15)
CCGCCATCGGGGACACGCTTGAACGAGGCGTCGGATGCTCGCTCCGGTTC
TAGAGTGCCGCCATCGGGGACACGCTTGAACGAGGCGTCGGATGCTCGCT
CCGGTTCTAGAGTGGGGCGACCGGCGTCCGGCGACCTGGCATCGAAACGG
ACCTCTGCGGCCATGGTCGCCAGGAAGACGTCCTCGGCGTTCAACACGAG
CGCCACCGTGGGGGGCTCGCAGCAGAGAAAGCCTTCCGCCGCCGTGGCCG
CGCTGGGCCACCGACCGTCGGTCGCCGCGAGATCGGGCAGAAAGCCCTCC
GTGGCCGTGAGCGTGGGGGCGTCGAAGCGGTCGTCCGTGGCGGCGTACCG
AGAAACCAAGAAGGATCTCCTCTCGAGCCACCGGAAAGTGTCGCAGCAGG
GGGCCGGCGCCGGGCGACCGGCGTCCGGCGACCTGGCATCGAAACGGACC
TCTGCGGCCATGGTCGCCAGGAAGACGTCCTCGGCGTTCAACACGAGCGC
CACCGTGGGGGGCTCGCAGCAGAGAAAGCCTTCCGCCGCCGTGGCCGCGC
TGGGCCACCGACCGTCGGTCGCCGCGAGATCGGGCAGAAAGCCCTCCGTG
GCCGTGAGCGTGGGGGCGTCGAAGCGGTCGTCCGTGGCGGCGTACCGAGA
AACCAAGAAGGATCTCCTCTCGAGCCACCGGAAAGTGTCGCAGCAGGGGG
CCGGCGCC
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